Wall clock time and date at job start Tue Mar 31 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47188 * 264.99530 * 3 2 1 5 5 H 1.48508 * 109.46863 * 24.99173 * 3 2 1 6 6 H 1.48496 * 109.47544 * 144.99156 * 3 2 1 7 7 C 1.37881 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00302 * 189.46381 * 7 2 1 9 9 C 1.50702 * 119.99313 * 9.46377 * 7 2 1 10 10 H 1.08999 * 109.47225 * 305.44430 * 9 7 2 11 11 C 1.52995 * 109.47436 * 65.45475 * 9 7 2 12 12 Cl 1.80290 * 109.47267 * 184.94205 * 11 9 7 13 13 O 1.42909 * 109.46608 * 185.45505 * 9 7 2 14 14 C 1.35270 * 116.99786 * 150.00383 * 13 9 7 15 15 N 1.32310 * 120.84353 * 0.24513 * 14 13 9 16 16 C 1.32885 * 121.47314 * 180.25667 * 15 14 13 17 17 O 1.35434 * 118.60614 * 179.75261 * 16 15 14 18 18 N 1.31732 * 122.78809 * 359.47857 * 16 15 14 19 19 C 1.34071 * 120.37017 * 0.25791 * 18 16 15 20 20 C 1.40178 * 121.94942 * 179.97438 * 19 18 16 21 21 C 1.36304 * 119.58818 * 180.02562 * 20 19 18 22 22 C 1.39221 * 121.03664 * 359.97438 * 21 20 19 23 23 N 1.48027 * 119.55044 * 179.97438 * 22 21 20 24 24 O 1.21794 * 120.00395 * 180.02562 * 23 22 21 25 25 O 1.21808 * 119.99489 * 0.02562 * 23 22 21 26 26 C 1.36366 * 120.90758 * 0.02562 * 22 21 20 27 27 C 1.39996 * 119.50828 * 359.97438 * 26 22 21 28 28 H 0.96998 * 120.00140 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46998 * 304.94433 * 11 9 7 30 30 H 1.09004 * 109.46883 * 64.94113 * 11 9 7 31 31 H 0.96693 * 114.00066 * 269.73244 * 17 16 15 32 32 H 1.07994 * 120.20462 * 359.97438 * 20 19 18 33 33 H 1.08005 * 119.48123 * 179.97438 * 21 20 19 34 34 H 1.07994 * 120.24307 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6025 1.9854 -1.3948 5 1 1.3976 2.6809 0.5916 6 1 3.4898 1.4731 0.8032 7 6 2.0046 -1.1940 0.0005 8 1 3.0735 -1.2003 0.1543 9 6 1.2664 -2.4903 -0.2135 10 1 0.4566 -2.5713 0.5116 11 6 0.6880 -2.5201 -1.6296 12 17 -0.3159 -4.0031 -1.8377 13 8 2.1686 -3.5857 -0.0442 14 6 1.6463 -4.7461 0.4145 15 7 0.3553 -4.8487 0.6853 16 6 -0.1701 -5.9810 1.1413 17 8 -1.4981 -6.0199 1.4042 18 7 0.5451 -7.0686 1.3435 19 6 1.8625 -7.0697 1.0946 20 6 2.6550 -8.2078 1.2984 21 6 3.9903 -8.1550 1.0300 22 6 4.5814 -6.9873 0.5554 23 7 6.0348 -6.9664 0.2753 24 8 6.5605 -5.9492 -0.1397 25 8 6.7049 -7.9667 0.4599 26 6 3.8401 -5.8620 0.3460 27 6 2.4657 -5.8823 0.6116 28 1 -0.4850 0.8400 0.0004 29 1 0.0689 -1.6371 -1.7878 30 1 1.5021 -2.5277 -2.3544 31 1 -1.7269 -5.7739 2.3108 32 1 2.2104 -9.1206 1.6665 33 1 4.5993 -9.0328 1.1881 34 1 4.3096 -4.9622 -0.0229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227095405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:47 Heat of formation + Delta-G solvation = -15.313101 kcal Electronic energy + Delta-G solvation = -26783.736713 eV Core-core repulsion = 22519.372782 eV Total energy + Delta-G solvation = -4264.363930 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.050 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.27130 -41.53556 -38.83371 -38.65391 -36.55010 -36.34369 -35.09083 -34.00905 -33.23021 -31.80471 -30.85183 -29.69455 -26.53857 -25.52683 -25.03933 -23.59246 -22.79609 -21.60054 -20.09682 -19.46244 -18.81908 -18.31147 -17.58925 -17.50864 -17.13867 -16.27940 -16.00249 -15.76862 -15.17125 -14.88265 -14.52130 -14.05876 -13.88011 -13.84039 -13.33274 -12.43008 -12.40780 -12.33545 -12.14458 -11.94120 -11.59185 -11.48194 -11.35033 -11.29994 -11.13288 -11.12109 -11.02021 -10.72263 -10.47122 -9.91532 -9.71338 -9.62525 -9.34232 -9.16490 -8.84169 -8.42126 -6.60022 -4.69390 -0.43774 0.17680 0.88544 1.36678 1.62522 2.50007 2.85563 3.02616 3.08601 3.13239 3.16281 3.24521 3.71463 3.93690 4.03554 4.10326 4.28188 4.39445 4.75112 4.81773 4.87889 5.06497 5.33047 5.38302 5.52107 5.74892 5.93901 5.96320 6.00229 6.35571 6.45429 6.70099 6.85802 7.24629 7.39631 7.48180 7.65081 7.66843 7.98457 8.41644 8.98022 10.47356 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.004551 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.234293 B = 6150.908892 C = 8022.530841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.207 3.793 10 H 0.082 0.918 11 C -0.031 4.031 12 Cl -0.224 7.224 13 O -0.276 6.276 14 C 0.466 3.534 15 N -0.565 5.565 16 C 0.573 3.427 17 O -0.455 6.455 18 N -0.563 5.563 19 C 0.246 3.754 20 C -0.107 4.107 21 C -0.032 4.032 22 C -0.080 4.080 23 N 0.035 4.965 24 O -0.161 6.161 25 O -0.167 6.167 26 C 0.051 3.949 27 C -0.204 4.204 28 H 0.274 0.726 29 H 0.119 0.881 30 H 0.077 0.923 31 H 0.415 0.585 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.175 -11.318 2.982 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.134 4.134 3 Si 0.740 3.260 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.097 0.903 9 C 0.153 3.847 10 H 0.099 0.901 11 C -0.094 4.094 12 Cl -0.198 7.198 13 O -0.175 6.175 14 C 0.268 3.732 15 N -0.308 5.308 16 C 0.269 3.731 17 O -0.259 6.259 18 N -0.296 5.296 19 C 0.116 3.884 20 C -0.127 4.127 21 C -0.054 4.054 22 C -0.164 4.164 23 N 0.553 4.447 24 O -0.377 6.377 25 O -0.381 6.381 26 C 0.030 3.970 27 C -0.211 4.211 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.096 0.904 31 H 0.276 0.724 32 H 0.179 0.821 33 H 0.177 0.823 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.369 -11.384 2.652 11.695 hybrid contribution 1.085 1.214 0.048 1.629 sum 1.454 -10.170 2.700 10.622 Atomic orbital electron populations 1.69957 1.06046 1.28487 1.46433 1.24973 0.95102 0.99782 0.93586 0.86222 0.79687 0.81128 0.78942 1.19828 1.20705 1.19280 1.20882 0.95592 0.87861 1.53219 0.90314 1.20893 0.90043 0.80445 0.93290 0.90059 1.25514 0.95314 0.87734 1.00812 1.98666 1.75803 1.47330 1.98010 1.86308 1.40429 1.17771 1.72960 1.20076 0.86027 0.86483 0.80592 1.67885 1.12287 1.28678 1.21988 1.20003 0.85034 0.82888 0.85199 1.84661 1.14956 1.89828 1.36409 1.68462 1.05115 1.29628 1.26425 1.18687 0.89278 0.91489 0.88982 1.20538 0.91319 0.98024 1.02824 1.20633 0.95124 0.96455 0.93174 1.20654 0.80919 0.98571 1.16291 1.43527 1.03210 1.00185 0.97798 1.94578 1.74022 1.22240 1.46831 1.94507 1.62522 1.24748 1.56345 1.20901 0.91698 0.97530 0.86848 1.18509 0.94417 0.95363 1.12854 0.91596 0.86250 0.90440 0.72394 0.82135 0.82340 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.79 12.16 55.43 0.67 -21.11 16 2 C 0.07 1.71 5.16 -17.82 -0.09 1.62 16 3 Si 0.91 18.78 29.55 -169.99 -5.02 13.76 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.54 -12.92 8.81 -34.44 -0.30 -13.22 16 8 H 0.08 1.88 7.83 -52.49 -0.41 1.47 16 9 C 0.21 4.62 2.12 -27.88 -0.06 4.56 16 10 H 0.08 2.00 6.98 -51.93 -0.36 1.64 16 11 C -0.03 -0.65 6.22 37.16 0.23 -0.42 16 12 Cl -0.22 -4.50 25.92 -51.86 -1.34 -5.84 16 13 O -0.28 -5.55 9.10 -17.50 -0.16 -5.70 16 14 C 0.47 8.45 6.71 -16.12 -0.11 8.35 16 15 N -0.56 -10.38 6.56 -14.41 -0.09 -10.48 16 16 C 0.57 9.28 8.65 -91.26 -0.79 8.49 16 17 O -0.45 -6.34 13.63 -17.99 -0.25 -6.58 16 18 N -0.56 -8.51 10.47 -12.79 -0.13 -8.64 16 19 C 0.25 3.46 6.61 -84.85 -0.56 2.90 16 20 C -0.11 -1.14 10.01 -39.55 -0.40 -1.53 16 21 C -0.03 -0.33 9.46 -39.91 -0.38 -0.71 16 22 C -0.08 -1.04 6.81 -80.25 -0.55 -1.59 16 23 N 0.03 0.50 4.45 33.81 0.15 0.65 16 24 O -0.16 -2.54 18.38 -29.46 -0.54 -3.08 16 25 O -0.17 -2.38 18.40 -29.46 -0.54 -2.92 16 26 C 0.05 0.72 9.09 -39.60 -0.36 0.36 16 27 C -0.20 -3.15 5.75 -106.70 -0.61 -3.77 16 28 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 29 H 0.12 2.71 6.80 -51.93 -0.35 2.35 16 30 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.42 3.47 9.06 45.56 0.41 3.88 16 32 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.16 1.24 7.56 -52.48 -0.40 0.85 16 34 H 0.17 2.40 7.21 -52.49 -0.38 2.02 16 LS Contribution 325.33 15.07 4.90 4.90 Total: -1.00 -27.50 325.33 -7.80 -35.30 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -1.47 Total: 4.71 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -3.98 Total: 5.04 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.60 Total: -39.58 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -1.49 Total: -18.29 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.02 Total: 13.76 kcal Atomic # 17 Polarization: -4.50 SS G_CDS: -1.34 Total: -5.84 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.50 -7.80 -35.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227095405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.988 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds