Wall clock time and date at job start Tue Mar 31 2020 22:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47188 * 264.99530 * 3 2 1 5 5 H 1.48508 * 109.46863 * 24.99173 * 3 2 1 6 6 H 1.48496 * 109.47544 * 144.99156 * 3 2 1 7 7 C 1.37881 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00302 * 189.46381 * 7 2 1 9 9 C 1.50702 * 119.99313 * 9.46377 * 7 2 1 10 10 H 1.08999 * 109.47225 * 305.44430 * 9 7 2 11 11 C 1.52995 * 109.47436 * 65.45475 * 9 7 2 12 12 Cl 1.80290 * 109.47267 * 184.94205 * 11 9 7 13 13 O 1.42909 * 109.46608 * 185.45505 * 9 7 2 14 14 C 1.35270 * 116.99786 * 150.00383 * 13 9 7 15 15 N 1.32310 * 120.84353 * 0.24513 * 14 13 9 16 16 C 1.32885 * 121.47314 * 180.25667 * 15 14 13 17 17 O 1.35434 * 118.60614 * 179.75261 * 16 15 14 18 18 N 1.31732 * 122.78809 * 359.47857 * 16 15 14 19 19 C 1.34071 * 120.37017 * 0.25791 * 18 16 15 20 20 C 1.40178 * 121.94942 * 179.97438 * 19 18 16 21 21 C 1.36304 * 119.58818 * 180.02562 * 20 19 18 22 22 C 1.39221 * 121.03664 * 359.97438 * 21 20 19 23 23 N 1.48027 * 119.55044 * 179.97438 * 22 21 20 24 24 O 1.21794 * 120.00395 * 180.02562 * 23 22 21 25 25 O 1.21808 * 119.99489 * 0.02562 * 23 22 21 26 26 C 1.36366 * 120.90758 * 0.02562 * 22 21 20 27 27 C 1.39996 * 119.50828 * 359.97438 * 26 22 21 28 28 H 0.96998 * 120.00140 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46998 * 304.94433 * 11 9 7 30 30 H 1.09004 * 109.46883 * 64.94113 * 11 9 7 31 31 H 0.96693 * 114.00066 * 269.73244 * 17 16 15 32 32 H 1.07994 * 120.20462 * 359.97438 * 20 19 18 33 33 H 1.08005 * 119.48123 * 179.97438 * 21 20 19 34 34 H 1.07994 * 120.24307 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6025 1.9854 -1.3948 5 1 1.3976 2.6809 0.5916 6 1 3.4898 1.4731 0.8032 7 6 2.0046 -1.1940 0.0005 8 1 3.0735 -1.2003 0.1543 9 6 1.2664 -2.4903 -0.2135 10 1 0.4566 -2.5713 0.5116 11 6 0.6880 -2.5201 -1.6296 12 17 -0.3159 -4.0031 -1.8377 13 8 2.1686 -3.5857 -0.0442 14 6 1.6463 -4.7461 0.4145 15 7 0.3553 -4.8487 0.6853 16 6 -0.1701 -5.9810 1.1413 17 8 -1.4981 -6.0199 1.4042 18 7 0.5451 -7.0686 1.3435 19 6 1.8625 -7.0697 1.0946 20 6 2.6550 -8.2078 1.2984 21 6 3.9903 -8.1550 1.0300 22 6 4.5814 -6.9873 0.5554 23 7 6.0348 -6.9664 0.2753 24 8 6.5605 -5.9492 -0.1397 25 8 6.7049 -7.9667 0.4599 26 6 3.8401 -5.8620 0.3460 27 6 2.4657 -5.8823 0.6116 28 1 -0.4850 0.8400 0.0004 29 1 0.0689 -1.6371 -1.7878 30 1 1.5021 -2.5277 -2.3544 31 1 -1.7269 -5.7739 2.3108 32 1 2.2104 -9.1206 1.6665 33 1 4.5993 -9.0328 1.1881 34 1 4.3096 -4.9622 -0.0229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227095405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:47 Heat of formation + Delta-G solvation = -34.730627 kcal Electronic energy + Delta-G solvation = -26784.578720 eV Core-core repulsion = 22519.372782 eV Total energy + Delta-G solvation = -4265.205938 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.050 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.40787 -42.73933 -40.25662 -39.76117 -37.70096 -37.50296 -36.72803 -35.60582 -34.66031 -32.95524 -32.00834 -31.32949 -27.71297 -27.31537 -26.25918 -24.77851 -24.03756 -23.05244 -21.28792 -20.63750 -20.00690 -19.49148 -18.90807 -18.77773 -18.64829 -17.58233 -17.31760 -16.98183 -16.72812 -16.26632 -15.67553 -15.38687 -15.16508 -14.95856 -14.85634 -14.10531 -13.90359 -13.41078 -13.32660 -13.09208 -13.08176 -12.98904 -12.77414 -12.74828 -12.62941 -12.30328 -12.29372 -12.13434 -12.06810 -11.58731 -11.28307 -10.85979 -10.80672 -10.71507 -10.40801 -9.64779 -8.43274 -6.59097 -1.59322 -0.89730 -0.29608 0.26165 0.47870 1.37363 1.40759 1.43434 1.50026 1.51290 1.63667 1.93031 2.33629 2.54855 2.78306 2.91367 3.04461 3.13172 3.34685 3.64321 3.78727 4.01420 4.23697 4.24185 4.33942 4.45008 4.54767 4.66513 4.86363 4.99938 5.09897 5.24263 5.41593 5.54713 5.71055 6.01534 6.44958 6.47382 6.54754 6.75448 7.12113 8.64369 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.004551 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.234293 B = 6150.908892 C = 8022.530841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.035 3.965 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.217 3.783 10 H 0.053 0.947 11 C -0.022 4.022 12 Cl -0.213 7.213 13 O -0.288 6.288 14 C 0.447 3.553 15 N -0.590 5.590 16 C 0.563 3.437 17 O -0.460 6.460 18 N -0.553 5.553 19 C 0.232 3.768 20 C -0.086 4.086 21 C -0.017 4.017 22 C -0.071 4.071 23 N 0.033 4.967 24 O -0.209 6.209 25 O -0.134 6.134 26 C 0.039 3.961 27 C -0.208 4.208 28 H 0.276 0.724 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.436 0.564 32 H 0.199 0.801 33 H 0.197 0.803 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -13.648 3.589 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.169 4.169 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.594 4.594 8 H 0.091 0.909 9 C 0.163 3.837 10 H 0.071 0.929 11 C -0.085 4.085 12 Cl -0.187 7.187 13 O -0.188 6.188 14 C 0.249 3.751 15 N -0.334 5.334 16 C 0.259 3.741 17 O -0.267 6.267 18 N -0.286 5.286 19 C 0.103 3.897 20 C -0.105 4.105 21 C -0.038 4.038 22 C -0.155 4.155 23 N 0.550 4.450 24 O -0.413 6.413 25 O -0.359 6.359 26 C 0.017 3.983 27 C -0.214 4.214 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.300 0.700 32 H 0.216 0.784 33 H 0.214 0.786 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.158 -13.645 3.252 14.075 hybrid contribution 0.852 1.660 -0.052 1.867 sum 2.011 -11.985 3.200 12.566 Atomic orbital electron populations 1.70042 1.07224 1.29213 1.47145 1.25683 0.95720 1.02470 0.92990 0.85331 0.78443 0.77527 0.79090 1.19152 1.20404 1.19183 1.21125 0.95524 0.89126 1.53582 0.90866 1.20471 0.89340 0.80918 0.92988 0.92904 1.25235 0.95276 0.87482 1.00484 1.98659 1.75529 1.46570 1.97971 1.86247 1.40038 1.18237 1.74302 1.20289 0.86724 0.86443 0.81634 1.67792 1.12752 1.30114 1.22715 1.20117 0.85689 0.82703 0.85579 1.84623 1.13907 1.89803 1.38401 1.68543 1.05503 1.28746 1.25801 1.19179 0.89270 0.92109 0.89115 1.20929 0.90808 0.97776 1.01019 1.21037 0.95231 0.96304 0.91256 1.20839 0.79939 0.99120 1.15580 1.43711 1.03729 0.99980 0.97573 1.94610 1.74592 1.22809 1.49256 1.94475 1.62830 1.24284 1.54312 1.20766 0.91425 0.98062 0.88026 1.18523 0.94592 0.94964 1.13353 0.91455 0.87995 0.89559 0.69983 0.78373 0.78601 0.82278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.98 12.16 21.45 0.26 -45.72 16 2 C 0.03 1.69 5.16 84.66 0.44 2.13 16 3 Si 0.97 38.81 29.55 68.60 2.03 40.83 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.56 -27.58 8.81 25.60 0.23 -27.36 16 8 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 9 C 0.22 10.11 2.12 29.85 0.06 10.18 16 10 H 0.05 2.74 6.98 -2.39 -0.02 2.73 16 11 C -0.02 -0.94 6.22 71.98 0.45 -0.49 16 12 Cl -0.21 -8.70 25.92 -2.72 -0.07 -8.77 16 13 O -0.29 -12.10 9.10 -85.54 -0.78 -12.88 16 14 C 0.45 16.63 6.71 85.42 0.57 17.20 16 15 N -0.59 -22.13 6.56 -425.23 -2.79 -24.91 16 16 C 0.56 18.02 8.65 180.57 1.56 19.58 16 17 O -0.46 -12.56 13.63 -87.30 -1.19 -13.75 16 18 N -0.55 -15.76 10.47 -307.63 -3.22 -18.98 16 19 C 0.23 6.05 6.61 40.12 0.27 6.31 16 20 C -0.09 -1.45 10.01 22.29 0.22 -1.23 16 21 C -0.02 -0.27 9.46 22.06 0.21 -0.06 16 22 C -0.07 -1.69 6.81 36.17 0.25 -1.44 16 23 N 0.03 0.90 4.45 -46.93 -0.21 0.69 16 24 O -0.21 -6.59 18.38 18.89 0.35 -6.24 16 25 O -0.13 -3.38 18.40 18.88 0.35 -3.04 16 26 C 0.04 1.08 9.09 22.26 0.20 1.28 16 27 C -0.21 -6.33 5.75 -21.21 -0.12 -6.45 16 28 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 29 H 0.10 4.79 6.80 -2.39 -0.02 4.77 16 30 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.44 7.00 9.06 -74.06 -0.67 6.32 16 32 H 0.20 1.95 8.06 -2.91 -0.02 1.92 16 33 H 0.20 1.84 7.56 -2.91 -0.02 1.82 16 34 H 0.16 4.74 7.21 -2.91 -0.02 4.72 16 Total: -1.00 -60.42 325.33 -0.41 -60.83 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.54 Total: 12.28 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: 4.33 Total: 19.65 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -5.96 Total: -88.92 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -1.27 Total: -35.90 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 17 Polarization: -8.70 SS G_CDS: -0.07 Total: -8.77 kcal Total: -60.42 -0.41 -60.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227095405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.099 kcal (2) G-P(sol) polarization free energy of solvation -60.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds