Wall clock time and date at job start Tue Mar 31 2020 22:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00181 * 2 1 4 4 H 1.48495 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46973 * 299.99978 * 3 2 1 6 6 H 1.48500 * 109.47100 * 59.99853 * 3 2 1 7 7 C 1.37874 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00781 * 175.67383 * 7 2 1 9 9 C 1.50706 * 119.99468 * 355.67528 * 7 2 1 10 10 H 1.09000 * 109.47349 * 35.12910 * 9 7 2 11 11 C 1.53006 * 109.46976 * 155.12868 * 9 7 2 12 12 Cl 1.80294 * 109.47080 * 185.72021 * 11 9 7 13 13 O 1.42901 * 109.47204 * 275.12576 * 9 7 2 14 14 C 1.35266 * 116.99982 * 150.00295 * 13 9 7 15 15 N 1.32314 * 120.84169 * 359.71695 * 14 13 9 16 16 C 1.32885 * 121.47802 * 179.75988 * 15 14 13 17 17 O 1.35426 * 118.61072 * 180.27118 * 16 15 14 18 18 N 1.31735 * 122.78376 * 0.54200 * 16 15 14 19 19 C 1.34078 * 120.36771 * 359.73106 * 18 16 15 20 20 C 1.40178 * 121.94610 * 179.97438 * 19 18 16 21 21 C 1.36302 * 119.59251 * 180.02562 * 20 19 18 22 22 N 1.48012 * 119.48664 * 180.02562 * 21 20 19 23 23 O 1.21804 * 120.00082 * 359.97438 * 22 21 20 24 24 O 1.21799 * 120.00155 * 180.02562 * 22 21 20 25 25 C 1.39224 * 121.02976 * 359.97438 * 21 20 19 26 26 C 1.36357 * 120.91208 * 0.04679 * 25 21 20 27 27 C 1.40003 * 119.51219 * 359.95275 * 26 25 21 28 28 H 0.96993 * 120.00416 * 185.56426 * 1 2 3 29 29 H 1.09001 * 109.46957 * 305.71718 * 11 9 7 30 30 H 1.09001 * 109.47166 * 65.71635 * 11 9 7 31 31 H 0.96695 * 114.00305 * 270.25123 * 17 16 15 32 32 H 1.08001 * 120.20591 * 0.02562 * 20 19 18 33 33 H 1.08006 * 119.54696 * 180.02562 * 25 21 20 34 34 H 1.08001 * 120.24933 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0822 -1.1954 -0.0711 9 6 1.2542 -2.4973 0.0973 10 1 0.3078 -2.4127 -0.4369 11 6 2.0925 -3.6163 -0.5242 12 17 1.1293 -5.1400 -0.5595 13 8 1.0006 -2.7990 1.4709 14 6 -0.1167 -3.5096 1.7474 15 7 -0.9316 -3.8962 0.7793 16 6 -2.0300 -4.5987 1.0361 17 8 -2.8200 -4.9688 0.0003 18 7 -2.3856 -4.9461 2.2560 19 6 -1.6296 -4.5984 3.3074 20 6 -1.9769 -4.9498 4.6192 21 6 -1.1732 -4.5706 5.6528 22 7 -1.5418 -4.9434 7.0369 23 8 -2.5567 -5.5838 7.2454 24 8 -0.8307 -4.6091 7.9676 25 6 -0.0105 -3.8390 5.4267 26 6 0.3568 -3.4800 4.1636 27 6 -0.4463 -3.8535 3.0794 28 1 -0.4850 -0.8360 0.0814 29 1 2.3716 -3.3393 -1.5408 30 1 2.9928 -3.7692 0.0709 31 1 -3.5071 -4.3250 -0.2200 32 1 -2.8756 -5.5175 4.8098 33 1 0.6090 -3.5514 6.2634 34 1 1.2608 -2.9120 4.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228242565.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:56 Heat of formation + Delta-G solvation = -19.412925 kcal Electronic energy + Delta-G solvation = -26852.284819 eV Core-core repulsion = 22587.743107 eV Total energy + Delta-G solvation = -4264.541712 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.050 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.36711 -41.46511 -38.71791 -38.56456 -36.69014 -36.27064 -35.35915 -34.11097 -33.09620 -32.12243 -30.40576 -29.83420 -27.23807 -25.16525 -24.34022 -23.83004 -22.59736 -21.80246 -20.26125 -19.36259 -18.68439 -18.53086 -17.66264 -17.64199 -17.09072 -17.00812 -15.91943 -15.62077 -14.97311 -14.61587 -14.33726 -14.14220 -13.90065 -13.68563 -13.51729 -12.75413 -12.59118 -12.50680 -12.13911 -11.91583 -11.80193 -11.68356 -11.34092 -11.23788 -11.18068 -11.02071 -10.70649 -10.67321 -10.45829 -9.92580 -9.77934 -9.63393 -9.39123 -9.06135 -8.91695 -8.22674 -7.06561 -4.93541 -0.52274 0.22951 0.97105 1.20317 1.68612 2.55630 2.80025 2.95821 3.11946 3.15510 3.29366 3.30306 3.81115 4.00985 4.04881 4.20709 4.44871 4.49262 4.69874 4.80257 5.03216 5.18853 5.31103 5.50767 5.55153 5.57865 5.72323 5.80858 5.93678 6.06591 6.29822 6.45830 6.79030 7.20515 7.43170 7.52510 7.70670 7.78545 8.08824 8.12026 8.87117 10.29636 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.011272 B = 0.004224 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.359360 B = 6627.060247 C = 7928.226342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.038 3.962 3 Si 1.081 2.919 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.594 4.594 8 H 0.071 0.929 9 C 0.172 3.828 10 H 0.079 0.921 11 C -0.030 4.030 12 Cl -0.205 7.205 13 O -0.284 6.284 14 C 0.446 3.554 15 N -0.565 5.565 16 C 0.557 3.443 17 O -0.457 6.457 18 N -0.554 5.554 19 C 0.204 3.796 20 C -0.041 4.041 21 C 0.009 3.991 22 N 0.025 4.975 23 O -0.158 6.158 24 O -0.151 6.151 25 C -0.121 4.121 26 C -0.018 4.018 27 C -0.165 4.165 28 H 0.277 0.723 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.413 0.587 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -5.057 4.392 6.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.173 4.173 3 Si 0.906 3.094 4 H -0.207 1.207 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.629 4.629 8 H 0.089 0.911 9 C 0.120 3.880 10 H 0.097 0.903 11 C -0.093 4.093 12 Cl -0.179 7.179 13 O -0.184 6.184 14 C 0.248 3.752 15 N -0.309 5.309 16 C 0.252 3.748 17 O -0.260 6.260 18 N -0.288 5.288 19 C 0.076 3.924 20 C -0.061 4.061 21 C -0.076 4.076 22 N 0.547 4.453 23 O -0.374 6.374 24 O -0.369 6.369 25 C -0.141 4.141 26 C -0.038 4.038 27 C -0.172 4.172 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.273 0.727 32 H 0.186 0.814 33 H 0.175 0.825 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.548 -4.052 2.942 5.037 hybrid contribution 0.150 -1.348 0.728 1.539 sum -0.398 -5.400 3.669 6.541 Atomic orbital electron populations 1.70755 1.07154 1.31930 1.39976 1.26301 0.96194 1.03584 0.91232 0.83362 0.74636 0.73582 0.77791 1.20713 1.20501 1.20585 1.22014 0.95708 0.89455 1.55740 0.91079 1.21066 0.98130 0.92105 0.76702 0.90325 1.25086 0.96177 0.83782 1.04275 1.98697 1.76887 1.42996 1.99272 1.86940 1.33240 1.60798 1.37424 1.20473 0.85793 0.82136 0.86796 1.67776 1.07561 1.18854 1.36726 1.19827 0.85733 0.85046 0.84175 1.84656 1.47227 1.47186 1.46971 1.68265 1.33762 1.28474 0.98273 1.17939 0.89370 0.92919 0.92122 1.20396 0.99801 0.97341 0.88579 1.20814 0.99537 1.05923 0.81365 1.43643 0.99911 0.98598 1.03192 1.94550 1.14812 1.37248 1.90741 1.94536 1.49899 1.56966 1.35451 1.20532 0.95319 0.98996 0.99204 1.20973 0.98708 0.94714 0.89442 1.19138 0.99000 1.04778 0.94293 0.91138 0.87965 0.89662 0.72689 0.81428 0.82462 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.46 13.62 55.43 0.75 -21.70 16 2 C 0.04 0.91 5.46 -17.82 -0.10 0.82 16 3 Si 1.08 21.19 29.91 -169.99 -5.08 16.11 16 4 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.59 -13.80 8.69 -34.44 -0.30 -14.10 16 8 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.17 3.67 1.96 -27.88 -0.05 3.62 16 10 H 0.08 1.85 5.58 -51.93 -0.29 1.56 16 11 C -0.03 -0.55 6.31 37.16 0.23 -0.32 16 12 Cl -0.20 -3.75 25.98 -51.86 -1.35 -5.10 16 13 O -0.28 -5.84 9.10 -17.49 -0.16 -5.99 16 14 C 0.45 8.47 6.72 -16.12 -0.11 8.36 16 15 N -0.56 -10.73 6.59 -14.41 -0.09 -10.82 16 16 C 0.56 9.68 8.65 -91.26 -0.79 8.89 16 17 O -0.46 -6.78 13.63 -17.97 -0.25 -7.03 16 18 N -0.55 -9.34 10.48 -12.78 -0.13 -9.48 16 19 C 0.20 3.27 6.61 -84.85 -0.56 2.71 16 20 C -0.04 -0.57 9.50 -39.55 -0.38 -0.94 16 21 C 0.01 0.12 6.81 -80.28 -0.55 -0.43 16 22 N 0.03 0.36 4.45 33.80 0.15 0.51 16 23 O -0.16 -2.31 18.38 -29.46 -0.54 -2.85 16 24 O -0.15 -2.16 18.40 -29.46 -0.54 -2.70 16 25 C -0.12 -1.50 9.46 -39.89 -0.38 -1.88 16 26 C -0.02 -0.25 9.61 -39.60 -0.38 -0.63 16 27 C -0.17 -2.74 5.75 -106.70 -0.61 -3.35 16 28 H 0.28 7.25 6.67 -40.82 -0.27 6.97 16 29 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.41 3.96 9.06 45.56 0.41 4.37 16 32 H 0.17 2.09 7.54 -52.49 -0.40 1.69 16 33 H 0.16 1.61 7.56 -52.48 -0.40 1.21 16 34 H 0.16 2.06 7.72 -52.49 -0.40 1.66 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -27.53 325.61 -7.70 -35.23 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -1.40 Total: 6.17 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -3.97 Total: 2.74 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.68 Total: -41.49 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.49 Total: -18.57 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.08 Total: 16.11 kcal Atomic # 17 Polarization: -3.75 SS G_CDS: -1.35 Total: -5.10 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.53 -7.70 -35.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228242565.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.819 kcal (2) G-P(sol) polarization free energy of solvation -27.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds