Wall clock time and date at job start Tue Mar 31 2020 22:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48504 * 109.47297 * 270.00340 * 3 2 1 5 5 H 1.48497 * 109.47290 * 30.00388 * 3 2 1 6 6 H 1.48500 * 109.47007 * 150.00172 * 3 2 1 7 7 C 1.38798 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00514 * 359.97438 * 7 2 1 9 9 S 1.76206 * 119.99721 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99835 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47080 * 179.97438 * 10 9 7 12 12 O 1.21293 * 119.99974 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99871 * 179.97438 * 11 10 9 14 14 C 1.40090 * 119.99787 * 184.92523 * 13 11 10 15 15 C 1.39117 * 120.90063 * 276.18400 * 14 13 11 16 16 Cl 1.73589 * 120.47546 * 0.02562 * 15 14 13 17 17 N 1.32507 * 119.04772 * 180.02562 * 15 14 13 18 18 C 1.31792 * 121.01383 * 0.02562 * 17 15 14 19 19 N 1.31743 * 121.99368 * 0.25691 * 18 17 15 20 20 C 1.32818 * 120.83245 * 359.47568 * 19 18 17 21 21 N 1.39637 * 120.54982 * 180.23547 * 20 19 18 22 22 C 1.35873 * 126.10239 * 335.28010 * 21 20 19 23 23 C 1.35266 * 107.60833 * 179.97438 * 22 21 20 24 24 C 1.39972 * 107.97186 * 359.97438 * 23 22 21 25 25 N 1.30810 * 108.37042 * 359.74594 * 24 23 22 26 26 H 0.96999 * 120.00034 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47044 * 59.99764 * 10 9 7 28 28 H 1.08999 * 109.47052 * 300.00287 * 10 9 7 29 29 H 0.96994 * 120.00204 * 4.93612 * 13 11 10 30 30 H 1.07999 * 119.00335 * 179.97438 * 18 17 15 31 31 H 1.08002 * 126.19678 * 359.97438 * 22 21 20 32 32 H 1.08006 * 126.01509 * 179.97438 * 23 22 21 33 33 H 1.07999 * 125.81284 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2020 -0.0012 10 6 4.0865 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0021 12 8 6.3440 -2.2963 -0.0025 13 7 6.0456 -4.4948 -0.0016 14 6 7.4233 -4.7268 0.1015 15 6 8.2412 -4.6836 -1.0230 16 17 7.5706 -4.3389 -2.5866 17 7 9.5394 -4.9092 -0.8834 18 6 10.0596 -5.1724 0.2986 19 7 9.3222 -5.2287 1.3889 20 6 8.0133 -5.0097 1.3375 21 7 7.2381 -5.0661 2.4976 22 6 7.5359 -5.7612 3.6264 23 6 6.5340 -5.5536 4.5111 24 6 5.5952 -4.7074 3.9096 25 7 6.0180 -4.4106 2.7078 26 1 -0.4850 0.8400 0.0004 27 1 3.6432 -3.4318 -0.8906 28 1 3.6439 -3.4314 0.8893 29 1 5.4318 -5.2425 -0.0728 30 1 11.1219 -5.3516 0.3750 31 1 8.4137 -6.3693 3.7881 32 1 6.4697 -5.9678 5.5065 33 1 4.6800 -4.3554 4.3625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355512723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:17 Heat of formation + Delta-G solvation = 110.985836 kcal Electronic energy + Delta-G solvation = -23923.344861 eV Core-core repulsion = 20139.503285 eV Total energy + Delta-G solvation = -3783.841575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.030 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.21705 -41.04967 -39.29528 -37.21822 -35.45715 -34.72813 -32.44327 -32.26984 -30.81747 -30.34038 -28.77649 -25.63635 -25.18041 -24.65690 -21.81096 -21.43802 -20.83807 -19.05426 -18.46747 -18.22649 -17.45100 -16.65677 -16.46639 -15.83907 -15.10164 -14.98463 -14.86029 -14.69467 -14.62092 -14.02509 -13.89555 -13.51329 -13.09372 -12.80335 -12.71802 -12.28741 -12.20053 -11.50200 -11.34298 -11.27061 -11.05581 -11.01312 -10.64327 -10.48368 -10.19702 -9.90247 -9.75401 -9.54947 -9.25951 -9.00198 -8.95157 -8.50146 -6.91430 -6.29176 -4.00521 0.00822 0.17533 1.18043 1.56315 1.80248 2.51159 2.59519 2.84249 3.07573 3.15243 3.32967 3.48355 3.50532 3.56972 3.70964 4.10914 4.32888 4.47017 4.54567 4.69804 4.75820 5.10186 5.14296 5.27001 5.32950 5.42314 5.62836 5.76244 5.89918 6.01451 6.26659 6.39061 6.60836 7.16611 7.31130 7.43508 7.93988 8.34900 8.41641 9.17206 10.80074 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.003997 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.988782 B = 7002.718215 C = 8546.956083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.854 3.146 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.520 4.520 8 H 0.089 0.911 9 S -0.138 6.138 10 C -0.116 4.116 11 C 0.555 3.445 12 O -0.504 6.504 13 N -0.674 5.674 14 C 0.068 3.932 15 C 0.246 3.754 16 Cl 0.018 6.982 17 N -0.517 5.517 18 C 0.347 3.653 19 N -0.535 5.535 20 C 0.438 3.562 21 N -0.333 5.333 22 C 0.072 3.928 23 C -0.251 4.251 24 C 0.070 3.930 25 N -0.256 5.256 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.412 0.588 30 H 0.220 0.780 31 H 0.182 0.818 32 H 0.160 0.840 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.575 -17.114 4.649 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.111 4.111 3 Si 0.679 3.321 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.668 4.668 8 H 0.107 0.893 9 S 0.088 5.912 10 C -0.266 4.266 11 C 0.343 3.657 12 O -0.376 6.376 13 N -0.329 5.329 14 C -0.034 4.034 15 C 0.073 3.927 16 Cl 0.047 6.953 17 N -0.235 5.235 18 C 0.059 3.941 19 N -0.254 5.254 20 C 0.199 3.801 21 N -0.112 5.112 22 C -0.067 4.067 23 C -0.279 4.279 24 C -0.120 4.120 25 N -0.072 5.072 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.250 0.750 30 H 0.236 0.764 31 H 0.200 0.800 32 H 0.178 0.822 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 19.349 -14.912 3.456 24.672 hybrid contribution -1.685 -0.934 0.635 2.029 sum 17.664 -15.846 4.091 24.080 Atomic orbital electron populations 1.69933 1.05891 1.27741 1.48124 1.24679 0.94408 0.98863 0.93193 0.86770 0.81928 0.83420 0.79958 1.19202 1.19921 1.15961 1.22304 0.88207 0.97530 1.58719 0.89330 1.84827 1.09306 0.99587 1.97434 1.23186 0.92751 1.04655 1.06026 1.20330 0.90876 0.81027 0.73514 1.90717 1.58745 1.41685 1.46425 1.43159 1.02428 1.09556 1.77723 1.18204 0.87926 1.06781 0.90483 1.22579 0.89446 0.91777 0.88929 1.98478 1.82663 1.91696 1.22429 1.67895 1.11344 1.15778 1.28504 1.24870 1.00378 0.88720 0.80110 1.67797 1.03217 1.19968 1.34448 1.18254 0.86964 0.91287 0.83557 1.45705 1.17431 1.38226 1.09866 1.22923 1.00711 0.97399 0.85670 1.21741 0.96383 1.07445 1.02345 1.24442 1.00230 0.95758 0.91588 1.77911 0.93665 1.16611 1.19056 0.91949 0.88464 0.87867 0.74951 0.76387 0.80044 0.82248 0.78456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 2 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 3 Si 0.85 21.79 27.74 -169.99 -4.71 17.08 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 7 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 10 C -0.12 -2.24 6.16 36.01 0.22 -2.02 16 11 C 0.55 10.06 6.92 -10.98 -0.08 9.99 16 12 O -0.50 -11.13 15.84 5.55 0.09 -11.04 16 13 N -0.67 -9.44 3.50 -9.53 -0.03 -9.47 16 14 C 0.07 0.94 5.34 -83.15 -0.44 0.50 16 15 C 0.25 3.28 7.35 -16.93 -0.12 3.16 16 16 Cl 0.02 0.24 28.71 -51.86 -1.49 -1.25 16 17 N -0.52 -6.07 10.42 -11.60 -0.12 -6.19 16 18 C 0.35 3.24 12.27 -92.20 -1.13 2.11 16 19 N -0.53 -5.92 10.13 -13.52 -0.14 -6.06 16 20 C 0.44 5.74 7.47 -153.77 -1.15 4.59 16 21 N -0.33 -4.25 3.75 -11.81 -0.04 -4.30 16 22 C 0.07 0.69 11.23 -16.82 -0.19 0.50 16 23 C -0.25 -2.18 10.80 -39.99 -0.43 -2.61 16 24 C 0.07 0.77 12.02 -17.34 -0.21 0.56 16 25 N -0.26 -3.63 10.28 30.64 0.32 -3.31 16 26 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 28 H 0.10 1.88 8.14 -51.92 -0.42 1.46 16 29 H 0.41 4.60 8.83 -40.82 -0.36 4.23 16 30 H 0.22 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.16 0.90 8.06 -52.48 -0.42 0.48 16 33 H 0.20 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -36.33 332.63 -8.13 -44.47 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -2.47 Total: 1.18 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -3.32 Total: 4.98 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.75 Total: -54.95 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.49 Total: -1.25 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -36.33 -8.13 -44.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355512723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.453 kcal (2) G-P(sol) polarization free energy of solvation -36.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds