Wall clock time and date at job start Tue Mar 31 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 119.99980 * 2 1 4 4 H 1.48503 * 109.47176 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47228 * 30.00217 * 3 2 1 6 6 H 1.48503 * 109.47178 * 150.00313 * 3 2 1 7 7 C 1.38806 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99826 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99906 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46928 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99994 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99872 * 180.02562 * 11 10 9 14 14 C 1.39978 * 120.00082 * 175.51059 * 13 11 10 15 15 C 1.38743 * 120.04126 * 34.69282 * 14 13 11 16 16 C 1.38694 * 119.87715 * 179.97438 * 15 14 13 17 17 N 1.40285 * 120.01839 * 180.02562 * 16 15 14 18 18 C 1.35067 * 127.38678 * 179.71233 * 17 16 15 19 19 N 1.30749 * 107.27019 * 179.84141 * 18 17 16 20 20 N 1.28420 * 110.64470 * 0.44448 * 19 18 17 21 21 N 1.28944 * 110.20598 * 359.71903 * 20 19 18 22 22 C 1.38873 * 119.96367 * 0.02562 * 16 15 14 23 23 C 1.38156 * 120.08276 * 0.02562 * 22 16 15 24 24 C 1.38263 * 120.12038 * 359.69962 * 23 22 16 25 25 Cl 1.73604 * 119.97832 * 180.27419 * 24 23 22 26 26 H 0.96998 * 120.00084 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47305 * 60.00160 * 10 9 7 28 28 H 1.09003 * 109.46747 * 299.99653 * 10 9 7 29 29 H 0.97003 * 119.99607 * 355.50945 * 13 11 10 30 30 H 1.07997 * 120.06079 * 0.02562 * 15 14 13 31 31 H 1.07991 * 126.36348 * 0.02562 * 18 17 16 32 32 H 1.07999 * 119.95886 * 179.97438 * 22 16 15 33 33 H 1.08003 * 119.93655 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8914 -0.0029 11 6 1.9874 -5.3028 -0.0048 12 8 0.7911 -5.5023 -0.0050 13 7 2.8442 -6.3432 -0.0054 14 6 2.3561 -7.6518 0.0878 15 6 1.1494 -7.9872 -0.5092 16 6 0.6693 -9.2850 -0.4153 17 7 -0.5501 -9.6275 -1.0182 18 6 -1.1505 -10.8374 -1.0248 19 7 -2.2666 -10.7133 -1.6945 20 7 -2.4081 -9.5098 -2.1196 21 7 -1.4065 -8.7865 -1.7505 22 6 1.3964 -10.2452 0.2760 23 6 2.5973 -9.9092 0.8708 24 6 3.0819 -8.6179 0.7745 25 17 4.5948 -8.2015 1.5172 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7322 0.8872 28 1 3.1245 -3.7305 -0.8929 29 1 3.7990 -6.1850 -0.0703 30 1 0.5855 -7.2394 -1.0468 31 1 -0.7793 -11.7390 -0.5604 32 1 1.0223 -11.2557 0.3495 33 1 3.1607 -10.6578 1.4082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356629988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:25 Heat of formation + Delta-G solvation = 117.060049 kcal Electronic energy + Delta-G solvation = -22944.734056 eV Core-core repulsion = 19161.155878 eV Total energy + Delta-G solvation = -3783.578178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.030 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.47102 -40.86841 -39.00339 -37.15187 -35.68568 -34.41637 -32.61210 -32.50182 -31.21293 -30.32653 -28.65489 -25.57957 -25.46175 -24.38577 -22.57241 -22.41060 -20.65832 -19.32683 -18.01806 -17.32241 -16.98936 -16.89223 -16.74663 -16.05850 -15.96253 -15.05601 -14.86647 -14.43410 -14.18421 -14.10654 -13.69115 -13.58858 -13.26733 -12.83563 -12.73734 -12.63446 -12.34957 -12.32764 -11.45764 -11.42518 -11.29109 -11.12643 -11.09383 -10.84074 -10.78270 -10.67155 -9.92602 -9.77699 -9.14129 -9.11926 -8.60387 -8.36802 -6.60884 -6.28788 -4.01266 -0.13908 0.63599 1.13349 1.37618 1.61635 1.99123 2.57151 2.61255 3.08931 3.18279 3.18960 3.25903 3.41255 3.70396 3.82615 4.12115 4.24944 4.33765 4.42274 4.61977 4.80283 4.85904 5.04460 5.06826 5.22082 5.31010 5.49375 5.51240 5.60092 5.67284 5.78488 5.95173 6.11175 6.37550 7.11886 7.52740 8.09691 8.12018 8.27797 9.16588 10.78557 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.002987 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.520967 B = 9371.106753 C =11563.237845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.074 0.926 9 S -0.053 6.053 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.486 6.486 13 N -0.677 5.677 14 C 0.196 3.804 15 C -0.100 4.100 16 C 0.155 3.845 17 N -0.328 5.328 18 C 0.224 3.776 19 N -0.331 5.331 20 N -0.035 5.035 21 N -0.057 5.057 22 C -0.134 4.134 23 C -0.065 4.065 24 C -0.066 4.066 25 Cl -0.050 7.050 26 H 0.270 0.730 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.417 0.583 30 H 0.172 0.828 31 H 0.240 0.760 32 H 0.145 0.855 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.671 -24.525 2.074 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.174 5.826 10 C -0.305 4.305 11 C 0.322 3.678 12 O -0.357 6.357 13 N -0.324 5.324 14 C 0.098 3.902 15 C -0.123 4.123 16 C 0.061 3.939 17 N -0.118 5.118 18 C -0.073 4.073 19 N -0.179 5.179 20 N -0.030 5.030 21 N -0.041 5.041 22 C -0.157 4.157 23 C -0.085 4.085 24 C -0.096 4.096 25 Cl -0.021 7.021 26 H 0.080 0.920 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.254 0.746 30 H 0.190 0.810 31 H 0.256 0.744 32 H 0.162 0.838 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.589 -23.887 1.355 24.816 hybrid contribution 3.368 1.035 0.667 3.586 sum 9.957 -22.852 2.022 25.009 Atomic orbital electron populations 1.70006 1.05971 1.27652 1.46448 1.25000 0.95042 0.99098 0.94369 0.86147 0.79387 0.81438 0.78414 1.20200 1.20701 1.19658 1.22839 0.94923 0.91415 1.59487 0.90761 1.85488 1.03989 0.96371 1.96784 1.23559 1.07327 0.93921 1.05648 1.20716 0.86408 0.86335 0.74391 1.90746 1.15100 1.84951 1.44910 1.43820 1.11720 1.02857 1.73997 1.17204 0.93499 0.84809 0.94701 1.21141 0.96240 0.95054 0.99857 1.17378 0.83558 0.94887 0.98034 1.49089 1.17005 1.08458 1.37258 1.27438 0.90523 0.91545 0.97760 1.74495 1.16202 1.12340 1.14879 1.78148 1.14291 0.96988 1.13537 1.82917 0.97760 1.14541 1.08930 1.20698 0.95509 0.99046 1.00397 1.20663 0.94946 0.94297 0.98546 1.20902 0.91750 0.95257 1.01710 1.98396 1.29323 1.93668 1.80688 0.92042 0.88441 0.88480 0.74584 0.81032 0.74413 0.83778 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.96 29.55 -169.99 -5.02 15.93 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 7 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.05 -1.37 20.57 -107.50 -2.21 -3.58 16 10 C -0.15 -2.85 6.16 36.01 0.22 -2.62 16 11 C 0.53 9.00 7.69 -10.98 -0.08 8.92 16 12 O -0.49 -9.99 13.28 5.55 0.07 -9.91 16 13 N -0.68 -8.30 5.05 -9.85 -0.05 -8.35 16 14 C 0.20 2.25 6.30 -83.67 -0.53 1.73 16 15 C -0.10 -1.28 8.34 -39.23 -0.33 -1.61 16 16 C 0.15 1.56 6.70 -83.58 -0.56 1.00 16 17 N -0.33 -3.66 3.85 -11.75 -0.05 -3.71 16 18 C 0.22 1.86 12.16 -90.15 -1.10 0.76 16 19 N -0.33 -4.04 12.15 29.64 0.36 -3.68 16 20 N -0.03 -0.52 13.39 60.35 0.81 0.29 16 21 N -0.06 -0.86 13.33 60.35 0.80 -0.05 16 22 C -0.13 -0.81 9.49 -39.38 -0.37 -1.18 16 23 C -0.06 -0.39 9.82 -39.60 -0.39 -0.78 16 24 C -0.07 -0.57 6.34 -39.29 -0.25 -0.82 16 25 Cl -0.05 -0.40 27.94 -51.86 -1.45 -1.85 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.10 1.61 8.14 -51.91 -0.42 1.19 16 29 H 0.42 3.94 8.06 -40.82 -0.33 3.61 16 30 H 0.17 2.76 5.91 -52.49 -0.31 2.45 16 31 H 0.24 0.44 7.19 -52.49 -0.38 0.06 16 32 H 0.14 0.28 6.87 -52.49 -0.36 -0.08 16 33 H 0.15 0.49 8.06 -52.48 -0.42 0.06 16 LS Contribution 330.13 15.07 4.98 4.98 Total: -1.00 -35.78 330.13 -6.40 -42.18 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -2.19 Total: -0.18 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.19 Total: -7.16 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 2.61 Total: -40.41 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.21 Total: -3.58 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.45 Total: -1.85 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.78 -6.40 -42.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356629988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.240 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds