Wall clock time and date at job start Tue Mar 31 2020 22:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 119.99980 * 2 1 4 4 H 1.48503 * 109.47176 * 269.99913 * 3 2 1 5 5 H 1.48496 * 109.47228 * 30.00217 * 3 2 1 6 6 H 1.48503 * 109.47178 * 150.00313 * 3 2 1 7 7 C 1.38806 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99826 * 179.97438 * 7 2 1 9 9 S 1.76196 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99906 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46928 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99994 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99872 * 180.02562 * 11 10 9 14 14 C 1.39978 * 120.00082 * 175.51059 * 13 11 10 15 15 C 1.38743 * 120.04126 * 34.69282 * 14 13 11 16 16 C 1.38694 * 119.87715 * 179.97438 * 15 14 13 17 17 N 1.40285 * 120.01839 * 180.02562 * 16 15 14 18 18 C 1.35067 * 127.38678 * 179.71233 * 17 16 15 19 19 N 1.30749 * 107.27019 * 179.84141 * 18 17 16 20 20 N 1.28420 * 110.64470 * 0.44448 * 19 18 17 21 21 N 1.28944 * 110.20598 * 359.71903 * 20 19 18 22 22 C 1.38873 * 119.96367 * 0.02562 * 16 15 14 23 23 C 1.38156 * 120.08276 * 0.02562 * 22 16 15 24 24 C 1.38263 * 120.12038 * 359.69962 * 23 22 16 25 25 Cl 1.73604 * 119.97832 * 180.27419 * 24 23 22 26 26 H 0.96998 * 120.00084 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47305 * 60.00160 * 10 9 7 28 28 H 1.09003 * 109.46747 * 299.99653 * 10 9 7 29 29 H 0.97003 * 119.99607 * 355.50945 * 13 11 10 30 30 H 1.07997 * 120.06079 * 0.02562 * 15 14 13 31 31 H 1.07991 * 126.36348 * 0.02562 * 18 17 16 32 32 H 1.07999 * 119.95886 * 179.97438 * 22 16 15 33 33 H 1.08003 * 119.93655 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8914 -0.0029 11 6 1.9874 -5.3028 -0.0048 12 8 0.7911 -5.5023 -0.0050 13 7 2.8442 -6.3432 -0.0054 14 6 2.3561 -7.6518 0.0878 15 6 1.1494 -7.9872 -0.5092 16 6 0.6693 -9.2850 -0.4153 17 7 -0.5501 -9.6275 -1.0182 18 6 -1.1505 -10.8374 -1.0248 19 7 -2.2666 -10.7133 -1.6945 20 7 -2.4081 -9.5098 -2.1196 21 7 -1.4065 -8.7865 -1.7505 22 6 1.3964 -10.2452 0.2760 23 6 2.5973 -9.9092 0.8708 24 6 3.0819 -8.6179 0.7745 25 17 4.5948 -8.2015 1.5172 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7322 0.8872 28 1 3.1245 -3.7305 -0.8929 29 1 3.7990 -6.1850 -0.0703 30 1 0.5855 -7.2394 -1.0468 31 1 -0.7793 -11.7390 -0.5604 32 1 1.0223 -11.2557 0.3495 33 1 3.1607 -10.6578 1.4082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356629988.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:25 Heat of formation + Delta-G solvation = 91.609067 kcal Electronic energy + Delta-G solvation = -22945.837693 eV Core-core repulsion = 19161.155878 eV Total energy + Delta-G solvation = -3784.681815 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.030 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.34014 -41.85553 -40.02648 -37.84945 -36.65003 -35.34460 -34.60961 -33.50020 -32.22313 -31.22688 -29.78954 -27.69285 -26.29307 -25.20280 -23.49817 -23.22470 -21.76216 -20.28204 -19.78323 -18.22919 -17.93183 -17.80889 -17.75767 -17.03850 -16.90236 -16.84461 -16.17697 -16.00348 -15.19048 -15.01863 -14.85343 -14.54496 -14.44498 -14.05639 -13.81933 -13.57106 -13.39054 -13.21192 -13.09433 -12.91504 -12.65325 -12.30834 -12.18968 -12.08358 -11.77692 -11.69723 -11.54968 -11.16536 -11.10701 -10.32763 -9.91665 -9.41875 -8.70872 -8.37244 -6.16000 -0.88522 -0.09536 0.34416 0.64420 0.92045 1.14567 1.17394 1.36313 1.41403 1.42365 1.53806 1.93936 2.23889 2.34102 2.95295 2.97581 3.23099 3.28882 3.55683 3.61429 3.73386 3.83574 3.99631 4.16038 4.18732 4.21607 4.41700 4.50621 4.64392 4.84575 4.99501 5.03648 5.26980 5.39995 5.57535 6.08332 6.17467 6.88116 7.04378 7.22609 8.71849 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.002987 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.520967 B = 9371.106753 C =11563.237845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.546 4.546 8 H 0.086 0.914 9 S -0.146 6.146 10 C -0.130 4.130 11 C 0.538 3.462 12 O -0.532 6.532 13 N -0.658 5.658 14 C 0.168 3.832 15 C -0.128 4.128 16 C 0.138 3.862 17 N -0.329 5.329 18 C 0.251 3.749 19 N -0.358 5.358 20 N -0.063 5.063 21 N -0.111 5.111 22 C -0.099 4.099 23 C -0.050 4.050 24 C -0.059 4.059 25 Cl -0.041 7.041 26 H 0.271 0.729 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.430 0.570 30 H 0.126 0.874 31 H 0.309 0.691 32 H 0.202 0.798 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.992 -27.807 3.649 30.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.694 4.694 8 H 0.104 0.896 9 S 0.081 5.919 10 C -0.281 4.281 11 C 0.325 3.675 12 O -0.407 6.407 13 N -0.306 5.306 14 C 0.070 3.930 15 C -0.151 4.151 16 C 0.045 3.955 17 N -0.119 5.119 18 C -0.044 4.044 19 N -0.207 5.207 20 N -0.058 5.058 21 N -0.096 5.096 22 C -0.121 4.121 23 C -0.069 4.069 24 C -0.089 4.089 25 Cl -0.012 7.012 26 H 0.080 0.920 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.270 0.730 30 H 0.144 0.856 31 H 0.324 0.676 32 H 0.219 0.781 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 9.968 -27.210 2.932 29.127 hybrid contribution 2.449 1.773 0.235 3.033 sum 12.417 -25.437 3.167 28.483 Atomic orbital electron populations 1.70181 1.08026 1.28659 1.47936 1.26135 0.95935 1.03378 0.93710 0.84950 0.78256 0.75988 0.78777 1.19379 1.20442 1.17977 1.23200 0.95439 0.91770 1.58945 0.89585 1.85677 1.09883 0.99273 1.97096 1.23366 1.04087 0.92983 1.07628 1.20349 0.86109 0.86691 0.74311 1.90752 1.17034 1.85495 1.47379 1.43357 1.11644 1.02660 1.72933 1.17269 0.94151 0.84581 0.96949 1.20875 0.97053 0.95904 1.01314 1.17684 0.83643 0.94911 0.99250 1.49144 1.17073 1.08873 1.36840 1.28698 0.88494 0.91994 0.95176 1.74390 1.18452 1.11579 1.16297 1.78128 1.14914 0.98208 1.14525 1.82887 0.99020 1.16481 1.11227 1.21340 0.93996 1.00232 0.96511 1.21253 0.94723 0.93671 0.97299 1.21069 0.91610 0.95598 1.00618 1.98408 1.28626 1.93808 1.80349 0.91995 0.86314 0.86393 0.73001 0.85567 0.67646 0.78073 0.78540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.99 13.22 21.65 0.29 -55.70 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.55 -30.61 9.50 67.96 0.65 -29.97 16 8 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -7.97 20.57 -56.49 -1.16 -9.13 16 10 C -0.13 -4.87 6.16 71.24 0.44 -4.43 16 11 C 0.54 18.92 7.69 87.66 0.67 19.60 16 12 O -0.53 -23.63 13.28 -3.05 -0.04 -23.67 16 13 N -0.66 -16.14 5.05 -303.47 -1.53 -17.68 16 14 C 0.17 3.74 6.30 38.14 0.24 3.98 16 15 C -0.13 -3.40 8.34 22.50 0.19 -3.21 16 16 C 0.14 2.53 6.70 38.05 0.25 2.78 16 17 N -0.33 -7.04 3.85 -191.09 -0.74 -7.78 16 18 C 0.25 3.39 12.16 180.18 2.19 5.58 16 19 N -0.36 -8.48 12.15 -60.13 -0.73 -9.21 16 20 N -0.06 -1.99 13.39 37.02 0.50 -1.49 16 21 N -0.11 -3.58 13.33 37.02 0.49 -3.09 16 22 C -0.10 -0.65 9.49 22.40 0.21 -0.43 16 23 C -0.05 -0.33 9.82 22.26 0.22 -0.11 16 24 C -0.06 -0.84 6.34 22.46 0.14 -0.70 16 25 Cl -0.04 -0.53 27.94 -2.72 -0.08 -0.61 16 26 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.12 3.94 8.14 -2.40 -0.02 3.92 16 28 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 29 H 0.43 7.71 8.06 -92.71 -0.75 6.96 16 30 H 0.13 4.57 5.91 -2.91 -0.02 4.55 16 31 H 0.31 -1.02 7.19 -2.92 -0.02 -1.04 16 32 H 0.20 -1.00 6.87 -2.91 -0.02 -1.02 16 33 H 0.20 -0.29 8.06 -2.91 -0.02 -0.31 16 Total: -1.00 -89.11 330.13 5.15 -83.96 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 0.46 Total: 4.81 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 5.67 Total: -5.70 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -1.72 Total: -94.95 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.04 Total: -23.67 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -7.97 SS G_CDS: -1.16 Total: -9.13 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -89.11 5.15 -83.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356629988.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.565 kcal (2) G-P(sol) polarization free energy of solvation -89.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds