Wall clock time and date at job start Tue Mar 31 2020 22:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86807 * 119.99971 * 2 1 4 4 H 1.48502 * 109.46883 * 269.99654 * 3 2 1 5 5 H 1.48501 * 109.47159 * 29.99696 * 3 2 1 6 6 H 1.48503 * 109.47113 * 150.00102 * 3 2 1 7 7 C 1.40049 * 120.00498 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00526 * 180.02562 * 7 2 1 9 9 C 1.46381 * 119.99476 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00115 * 4.99985 * 9 7 2 11 11 N 1.34776 * 119.99647 * 185.00801 * 9 7 2 12 12 C 1.46923 * 120.62929 * 174.76191 * 11 9 7 13 13 C 1.53189 * 108.77955 * 126.36324 * 12 11 9 14 14 C 1.53044 * 109.33923 * 54.62003 * 13 12 11 15 15 C 1.53039 * 109.53565 * 298.68401 * 14 13 12 16 16 H 1.09009 * 109.47073 * 301.36748 * 15 14 13 17 17 C 1.50697 * 109.52292 * 181.30368 * 15 14 13 18 18 N 1.31798 * 119.10940 * 299.83701 * 17 15 14 19 19 C 1.32319 * 120.82906 * 179.76106 * 18 17 15 20 20 C 1.38694 * 119.09211 * 0.51008 * 19 18 17 21 21 Br 1.89101 * 120.80960 * 179.77385 * 20 19 18 22 22 C 1.38685 * 118.37790 * 359.74578 * 20 19 18 23 23 N 1.31797 * 119.11161 * 120.11315 * 17 15 14 24 24 C 1.46922 * 120.63085 * 354.72896 * 11 9 7 25 25 H 0.96992 * 119.99836 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.58659 * 6.57248 * 12 11 9 27 27 H 1.09002 * 109.58497 * 246.15445 * 12 11 9 28 28 H 1.09008 * 109.49590 * 174.58261 * 13 12 11 29 29 H 1.08991 * 109.49927 * 294.64865 * 13 12 11 30 30 H 1.08997 * 109.45957 * 58.66689 * 14 13 12 31 31 H 1.08997 * 109.46062 * 178.62885 * 14 13 12 32 32 H 1.08002 * 120.45463 * 180.27919 * 19 18 17 33 33 H 1.07993 * 120.45449 * 180.02562 * 22 20 19 34 34 H 1.08992 * 109.58981 * 353.42109 * 24 11 9 35 35 H 1.09005 * 109.58504 * 113.84982 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 1.4381 2.6528 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0071 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0617 -2.4825 -0.0918 11 7 1.9452 -3.6454 0.1030 12 6 1.2204 -4.9181 0.2196 13 6 1.7213 -5.8724 -0.8690 14 6 3.2427 -6.0040 -0.7668 15 6 3.8907 -4.6353 -0.9878 16 1 3.6047 -4.2517 -1.9673 17 6 5.3899 -4.7708 -0.9189 18 7 5.9430 -5.2177 0.1908 19 6 7.2556 -5.3545 0.2869 20 6 8.0506 -5.0105 -0.7963 21 35 9.9319 -5.1806 -0.7097 22 6 7.4320 -4.5392 -1.9446 23 7 6.1131 -4.4342 -1.9681 24 6 3.4143 -3.6668 0.0994 25 1 -0.4849 0.8400 0.0004 26 1 0.1523 -4.7436 0.0894 27 1 1.4043 -5.3547 1.2013 28 1 1.2617 -6.8516 -0.7340 29 1 1.4553 -5.4777 -1.8494 30 1 3.5094 -6.3759 0.2224 31 1 3.5986 -6.7015 -1.5250 32 1 7.7021 -5.7255 1.1977 33 1 8.0186 -4.2620 -2.8079 34 1 3.7938 -2.6668 -0.1103 35 1 3.7772 -4.0014 1.0712 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471806467.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:55 Heat of formation + Delta-G solvation = 14.167297 kcal Electronic energy + Delta-G solvation = -21137.052850 eV Core-core repulsion = 17795.372694 eV Total energy + Delta-G solvation = -3341.680156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39177 -38.56631 -36.00499 -34.03188 -33.68641 -32.54546 -31.71349 -31.23290 -29.07640 -26.49726 -25.05582 -24.35751 -24.16842 -21.97621 -20.49351 -18.88177 -17.89477 -17.19572 -16.47464 -15.75942 -15.28489 -15.20468 -14.50329 -14.32296 -14.07962 -13.95318 -13.77938 -13.26684 -13.04777 -12.42696 -12.15404 -11.75731 -11.55443 -11.27870 -11.18534 -11.13489 -11.00255 -10.96650 -10.82515 -10.68679 -10.46595 -10.27796 -10.11529 -9.89476 -9.43835 -9.33807 -8.86337 -7.59655 -7.24928 -6.21021 -4.65929 0.39808 0.78862 1.09365 3.13169 3.20227 3.23035 3.40928 3.66330 3.87016 4.08571 4.14160 4.50072 4.53351 4.56158 4.92273 5.10220 5.17165 5.32928 5.44364 5.63117 5.75756 5.80443 5.93746 6.02304 6.09746 6.20048 6.36578 6.39837 6.50390 6.61576 6.63610 6.79015 7.44178 7.58372 7.84025 8.11865 8.33714 9.01130 9.40450 10.55913 10.74399 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.003230 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.247521 B = 8667.759776 C =10186.880812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.561 3.439 10 O -0.575 6.575 11 N -0.639 5.639 12 C 0.118 3.882 13 C -0.131 4.131 14 C -0.100 4.100 15 C -0.043 4.043 16 H 0.102 0.898 17 C 0.355 3.645 18 N -0.500 5.500 19 C 0.185 3.815 20 C -0.221 4.221 21 Br -0.024 7.024 22 C 0.185 3.815 23 N -0.505 5.505 24 C 0.139 3.861 25 H 0.269 0.731 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.092 0.908 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.521 -12.249 -1.666 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.089 0.911 9 C 0.367 3.633 10 O -0.458 6.458 11 N -0.377 5.377 12 C -0.006 4.006 13 C -0.169 4.169 14 C -0.138 4.138 15 C -0.065 4.065 16 H 0.121 0.879 17 C 0.089 3.911 18 N -0.213 5.213 19 C 0.017 3.983 20 C -0.305 4.305 21 Br 0.060 6.940 22 C 0.017 3.983 23 N -0.218 5.218 24 C 0.013 3.987 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.193 0.807 33 H 0.192 0.808 34 H 0.110 0.890 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.310 -12.080 -1.721 22.842 hybrid contribution 1.367 0.705 -0.048 1.539 sum 20.677 -11.374 -1.769 23.665 Atomic orbital electron populations 1.70005 1.07032 1.27326 1.35196 1.25704 0.94592 1.00230 0.92551 0.86427 0.80208 0.81574 0.78928 1.19642 1.20360 1.18944 1.20970 0.93484 0.89325 1.54293 0.91099 1.18229 0.86895 0.82124 0.76085 1.90593 1.14306 1.86003 1.54882 1.48159 1.03984 1.06182 1.79391 1.21178 0.98646 0.84873 0.95949 1.21914 0.94489 0.99647 1.00874 1.21459 0.95912 0.94365 1.02092 1.20698 0.83415 0.98797 1.03546 0.87934 1.23534 0.98093 0.86087 0.83373 1.68436 1.11331 1.14918 1.26630 1.23367 0.88731 0.89508 0.96717 1.23737 0.93627 1.12068 1.01075 1.96757 1.01319 1.97115 1.98843 1.23357 0.90668 0.88612 0.95707 1.68517 1.06082 1.16880 1.30343 1.21323 0.83081 0.98884 0.95393 0.92053 0.89596 0.93779 0.91532 0.91621 0.90954 0.92743 0.80717 0.80756 0.89033 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.89 11.84 55.55 0.66 -22.23 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.90 20.15 29.56 -169.99 -5.02 15.13 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.54 -15.27 8.86 -35.63 -0.32 -15.58 16 8 H 0.07 1.84 5.69 -52.49 -0.30 1.54 16 9 C 0.56 15.90 7.62 -12.98 -0.10 15.80 16 10 O -0.58 -18.49 14.45 5.20 0.08 -18.41 16 11 N -0.64 -14.49 2.97 -174.43 -0.52 -15.01 16 12 C 0.12 2.27 6.44 -3.71 -0.02 2.25 16 13 C -0.13 -2.01 6.08 -26.61 -0.16 -2.18 16 14 C -0.10 -1.43 5.06 -26.69 -0.13 -1.56 16 15 C -0.04 -0.69 2.67 -91.65 -0.24 -0.94 16 16 H 0.10 1.78 8.10 -51.92 -0.42 1.36 16 17 C 0.36 5.25 6.35 -157.19 -1.00 4.25 16 18 N -0.50 -6.78 9.74 -10.70 -0.10 -6.89 16 19 C 0.19 1.98 11.09 -17.17 -0.19 1.79 16 20 C -0.22 -2.21 6.27 -39.25 -0.25 -2.46 16 21 Br -0.02 -0.19 33.77 -68.01 -2.30 -2.49 16 22 C 0.18 2.03 11.09 -17.17 -0.19 1.84 16 23 N -0.50 -7.12 10.30 -10.71 -0.11 -7.23 16 24 C 0.14 2.66 5.54 -3.71 -0.02 2.64 16 25 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 26 H 0.09 1.86 6.99 -51.93 -0.36 1.50 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.18 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.09 1.90 5.37 -51.93 -0.28 1.62 16 35 H 0.06 1.03 7.88 -51.93 -0.41 0.62 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -33.70 315.58 -9.15 -42.85 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.86 Total: 1.29 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -2.72 Total: 8.23 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.08 Total: -51.36 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.08 Total: -18.41 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -2.30 Total: -2.49 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.70 -9.15 -42.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471806467.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.016 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds