Wall clock time and date at job start Tue Mar 31 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99727 * 2 1 4 4 H 1.48499 * 109.47303 * 240.00105 * 3 2 1 5 5 H 1.48497 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46935 * 120.00284 * 3 2 1 7 7 C 1.38801 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99861 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.81011 * 99.99731 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46967 * 179.97438 * 10 9 7 12 12 O 1.21292 * 120.00189 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99932 * 179.97438 * 11 10 9 14 14 C 1.39789 * 119.99790 * 184.35017 * 13 11 10 15 15 C 1.38738 * 120.12338 * 325.03131 * 14 13 11 16 16 C 1.38123 * 120.06081 * 179.97438 * 15 14 13 17 17 C 1.38509 * 120.29776 * 359.97438 * 16 15 14 18 18 Cl 1.73600 * 119.87744 * 179.97438 * 17 16 15 19 19 C 1.38116 * 120.23866 * 0.02670 * 17 16 15 20 20 C 1.39250 * 119.93986 * 359.69814 * 19 17 16 21 21 C 1.48381 * 120.15168 * 180.32258 * 20 19 17 22 22 N 1.34072 * 126.67878 * 179.91700 * 21 20 19 23 23 N 1.28984 * 107.26050 * 179.89411 * 22 21 20 24 24 N 1.28730 * 108.95808 * 0.37355 * 23 22 21 25 25 H 0.96994 * 125.33827 * 179.78545 * 24 23 22 26 26 N 1.28873 * 109.31885 * 359.76390 * 24 23 22 27 27 H 0.96998 * 120.00473 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47085 * 60.00118 * 10 9 7 29 29 H 1.08993 * 109.46839 * 299.99604 * 10 9 7 30 30 H 0.97000 * 119.99830 * 4.63155 * 13 11 10 31 31 H 1.08002 * 119.96644 * 0.02562 * 15 14 13 32 32 H 1.07990 * 119.85219 * 180.02562 * 16 15 14 33 33 H 1.08006 * 120.03248 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5161 -3.8914 -0.0013 11 6 1.9877 -5.3026 -0.0018 12 8 0.7913 -5.5023 -0.0019 13 7 2.8445 -6.3430 -0.0020 14 6 2.3570 -7.6499 -0.0942 15 6 1.1540 -7.9884 0.5084 16 6 0.6733 -9.2800 0.4160 17 6 1.3870 -10.2433 -0.2776 18 17 0.7729 -11.8635 -0.3862 19 6 2.5859 -9.9198 -0.8821 20 6 3.0770 -8.6194 -0.8001 21 6 4.3610 -8.2650 -1.4539 22 7 4.9513 -7.0612 -1.4597 23 7 6.0460 -7.1750 -2.1322 24 7 6.1569 -8.3880 -2.5487 25 1 6.8904 -8.7336 -3.0809 26 7 5.1406 -9.0712 -2.1471 27 1 -0.4851 0.8400 -0.0004 28 1 3.1239 -3.7317 0.8891 29 1 3.1253 -3.7309 -0.8908 30 1 3.7991 -6.1851 0.0660 31 1 0.5926 -7.2411 1.0495 32 1 -0.2637 -9.5397 0.8860 33 1 3.1399 -10.6737 -1.4218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581858765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:52 Heat of formation + Delta-G solvation = 115.766759 kcal Electronic energy + Delta-G solvation = -23141.201786 eV Core-core repulsion = 19357.567527 eV Total energy + Delta-G solvation = -3783.634259 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.030 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.76815 -40.57449 -38.60270 -36.72373 -34.95941 -34.28162 -33.89035 -32.43632 -30.98010 -30.52579 -28.33201 -25.50253 -25.31263 -24.66981 -22.96157 -21.92978 -20.44590 -19.60775 -18.09176 -17.59685 -17.44342 -17.01684 -16.57744 -15.67179 -15.13633 -14.80639 -14.73512 -14.42584 -14.20121 -13.85264 -13.83315 -13.38756 -12.79495 -12.61967 -12.43372 -12.38249 -12.06864 -11.99306 -11.66025 -11.44240 -11.18128 -11.07932 -11.04920 -11.03365 -10.77968 -10.17199 -9.85376 -9.56551 -9.10110 -9.06342 -8.28435 -8.19058 -6.52274 -6.22448 -3.93489 0.34139 0.86996 0.93774 1.85196 1.95095 2.01733 2.78942 2.88639 3.24125 3.26255 3.29501 3.33928 3.47470 3.60117 3.85408 4.19350 4.59110 4.67672 4.89730 4.91579 5.09665 5.10902 5.13085 5.34667 5.55467 5.63990 5.70282 5.84342 5.95642 5.98769 6.07531 6.12859 6.27133 6.69674 7.44501 7.59640 7.83373 8.33052 8.35055 9.23116 10.84946 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.002866 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.944580 B = 9767.920629 C =11615.502844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.056 6.056 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.496 6.496 13 N -0.671 5.671 14 C 0.212 3.788 15 C -0.115 4.115 16 C -0.064 4.064 17 C -0.063 4.063 18 Cl -0.069 7.069 19 C -0.051 4.051 20 C -0.049 4.049 21 C 0.229 3.771 22 N -0.275 5.275 23 N -0.039 5.039 24 N -0.225 5.225 25 H 0.476 0.524 26 N -0.293 5.293 27 H 0.269 0.731 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.421 0.579 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.633 -23.197 -2.179 25.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.303 4.303 11 C 0.324 3.676 12 O -0.368 6.368 13 N -0.319 5.319 14 C 0.111 3.889 15 C -0.136 4.136 16 C -0.084 4.084 17 C -0.090 4.090 18 Cl -0.040 7.040 19 C -0.072 4.072 20 C -0.056 4.056 21 C -0.051 4.051 22 N -0.149 5.149 23 N -0.034 5.034 24 N -0.071 5.071 25 H 0.331 0.669 26 N -0.145 5.145 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.262 0.738 31 H 0.180 0.820 32 H 0.161 0.839 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.953 -23.011 -2.381 24.806 hybrid contribution 2.597 0.679 -0.380 2.711 sum 11.550 -22.333 -2.761 25.294 Atomic orbital electron populations 1.69996 1.05946 1.27618 1.46758 1.24983 0.95027 0.99019 0.94475 0.86222 0.79238 0.81191 0.78850 1.19915 1.20829 1.19901 1.22824 0.94953 0.91491 1.59128 0.90811 1.85350 1.04487 0.96361 1.96790 1.23538 1.06953 0.94095 1.05697 1.20614 0.86314 0.86386 0.74291 1.90694 1.15202 1.85193 1.45754 1.43983 1.12311 1.02966 1.72669 1.17786 0.93910 0.84203 0.92956 1.21377 0.95758 0.96459 0.99981 1.21170 0.99492 0.91370 0.96406 1.20609 0.96466 0.87078 1.04864 1.98368 1.87260 1.20991 1.97353 1.20723 0.94117 0.94707 0.97661 1.16830 0.91848 0.94290 1.02651 1.23401 0.96867 0.86497 0.98321 1.75888 1.01491 1.20952 1.16523 1.78954 1.13543 1.02058 1.08822 1.47712 1.17865 1.05598 1.35943 0.66906 1.74922 0.98705 1.24345 1.16501 0.92102 0.88634 0.88420 0.73834 0.82031 0.83917 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 10 C -0.15 -3.03 6.16 36.00 0.22 -2.80 16 11 C 0.54 9.75 7.69 -10.99 -0.08 9.66 16 12 O -0.50 -10.35 13.30 5.55 0.07 -10.28 16 13 N -0.67 -9.74 4.72 -9.68 -0.05 -9.79 16 14 C 0.21 2.84 6.31 -83.43 -0.53 2.31 16 15 C -0.12 -1.49 8.69 -39.44 -0.34 -1.83 16 16 C -0.06 -0.68 9.81 -39.52 -0.39 -1.07 16 17 C -0.06 -0.64 6.31 -39.53 -0.25 -0.89 16 18 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 19 C -0.05 -0.52 9.47 -39.25 -0.37 -0.89 16 20 C -0.05 -0.59 5.89 -104.73 -0.62 -1.20 16 21 C 0.23 2.67 7.87 -156.29 -1.23 1.44 16 22 N -0.28 -3.42 9.83 32.14 0.32 -3.10 16 23 N -0.04 -0.40 13.47 60.35 0.81 0.41 16 24 N -0.23 -1.62 7.90 60.35 0.48 -1.15 16 25 H 0.48 1.06 8.96 -340.36 -3.05 -2.00 16 26 N -0.29 -2.80 12.08 32.16 0.39 -2.41 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 30 H 0.42 5.52 6.51 -40.82 -0.27 5.25 16 31 H 0.16 2.32 6.22 -52.49 -0.33 1.99 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.14 1.26 7.88 -52.48 -0.41 0.85 16 LS Contribution 328.14 15.07 4.95 4.95 Total: -1.00 -34.11 328.14 -9.29 -43.41 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.87 Total: 0.72 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -3.39 Total: -8.03 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 2.68 Total: -41.18 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.11 -9.29 -43.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581858765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.175 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds