Wall clock time and date at job start Tue Mar 31 2020 22:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99727 * 2 1 4 4 H 1.48499 * 109.47303 * 240.00105 * 3 2 1 5 5 H 1.48497 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46935 * 120.00284 * 3 2 1 7 7 C 1.38801 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99861 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99630 * 0.02562 * 7 2 1 10 10 C 1.81011 * 99.99731 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46967 * 179.97438 * 10 9 7 12 12 O 1.21292 * 120.00189 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99932 * 179.97438 * 11 10 9 14 14 C 1.39789 * 119.99790 * 184.35017 * 13 11 10 15 15 C 1.38738 * 120.12338 * 325.03131 * 14 13 11 16 16 C 1.38123 * 120.06081 * 179.97438 * 15 14 13 17 17 C 1.38509 * 120.29776 * 359.97438 * 16 15 14 18 18 Cl 1.73600 * 119.87744 * 179.97438 * 17 16 15 19 19 C 1.38116 * 120.23866 * 0.02670 * 17 16 15 20 20 C 1.39250 * 119.93986 * 359.69814 * 19 17 16 21 21 C 1.48381 * 120.15168 * 180.32258 * 20 19 17 22 22 N 1.34072 * 126.67878 * 179.91700 * 21 20 19 23 23 N 1.28984 * 107.26050 * 179.89411 * 22 21 20 24 24 N 1.28730 * 108.95808 * 0.37355 * 23 22 21 25 25 H 0.96994 * 125.33827 * 179.78545 * 24 23 22 26 26 N 1.28873 * 109.31885 * 359.76390 * 24 23 22 27 27 H 0.96998 * 120.00473 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.47085 * 60.00118 * 10 9 7 29 29 H 1.08993 * 109.46839 * 299.99604 * 10 9 7 30 30 H 0.97000 * 119.99830 * 4.63155 * 13 11 10 31 31 H 1.08002 * 119.96644 * 0.02562 * 15 14 13 32 32 H 1.07990 * 119.85219 * 180.02562 * 16 15 14 33 33 H 1.08006 * 120.03248 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0019 10 6 2.5161 -3.8914 -0.0013 11 6 1.9877 -5.3026 -0.0018 12 8 0.7913 -5.5023 -0.0019 13 7 2.8445 -6.3430 -0.0020 14 6 2.3570 -7.6499 -0.0942 15 6 1.1540 -7.9884 0.5084 16 6 0.6733 -9.2800 0.4160 17 6 1.3870 -10.2433 -0.2776 18 17 0.7729 -11.8635 -0.3862 19 6 2.5859 -9.9198 -0.8821 20 6 3.0770 -8.6194 -0.8001 21 6 4.3610 -8.2650 -1.4539 22 7 4.9513 -7.0612 -1.4597 23 7 6.0460 -7.1750 -2.1322 24 7 6.1569 -8.3880 -2.5487 25 1 6.8904 -8.7336 -3.0809 26 7 5.1406 -9.0712 -2.1471 27 1 -0.4851 0.8400 -0.0004 28 1 3.1239 -3.7317 0.8891 29 1 3.1253 -3.7309 -0.8908 30 1 3.7991 -6.1851 0.0660 31 1 0.5926 -7.2411 1.0495 32 1 -0.2637 -9.5397 0.8860 33 1 3.1399 -10.6737 -1.4218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581858765.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:51 Heat of formation + Delta-G solvation = 92.607276 kcal Electronic energy + Delta-G solvation = -23142.206057 eV Core-core repulsion = 19357.567527 eV Total energy + Delta-G solvation = -3784.638530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.030 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.55407 -41.72695 -39.75421 -37.57722 -35.95453 -35.27720 -34.72140 -34.56939 -31.97199 -31.70570 -29.59890 -27.64218 -26.12877 -25.53913 -23.98581 -22.81451 -21.73259 -20.41345 -19.83828 -18.77379 -18.23939 -18.07877 -17.87572 -16.87137 -16.86181 -16.24153 -16.00212 -15.73257 -15.27376 -15.07164 -14.82042 -14.66257 -14.47915 -13.82343 -13.52007 -13.31437 -13.15486 -13.10831 -12.89444 -12.85704 -12.62867 -12.47974 -12.27768 -12.00003 -11.91966 -11.75200 -11.27514 -11.11413 -10.95072 -10.29533 -9.99405 -9.20721 -8.64740 -8.33412 -6.10874 -0.53685 -0.00660 0.09484 1.04297 1.13578 1.21975 1.36096 1.42678 1.45091 1.47461 1.56046 2.08513 2.27964 2.50896 2.53736 3.00904 3.01680 3.28220 3.70215 3.77252 3.84782 4.02897 4.18129 4.24927 4.27425 4.45895 4.51951 4.65899 4.82171 5.05758 5.06957 5.25631 5.43993 5.56549 5.63781 6.21292 6.24658 6.96882 7.04914 7.08289 8.75408 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.002866 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.944580 B = 9767.920629 C =11615.502844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.082 0.918 9 S -0.135 6.135 10 C -0.130 4.130 11 C 0.541 3.459 12 O -0.530 6.530 13 N -0.654 5.654 14 C 0.186 3.814 15 C -0.126 4.126 16 C -0.060 4.060 17 C -0.057 4.057 18 Cl -0.052 7.052 19 C -0.044 4.044 20 C -0.045 4.045 21 C 0.213 3.787 22 N -0.303 5.303 23 N -0.048 5.048 24 N -0.194 5.194 25 H 0.497 0.503 26 N -0.283 5.283 27 H 0.271 0.729 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.428 0.572 31 H 0.142 0.858 32 H 0.162 0.838 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.762 -24.657 -2.771 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.092 5.908 10 C -0.281 4.281 11 C 0.328 3.672 12 O -0.405 6.405 13 N -0.303 5.303 14 C 0.087 3.913 15 C -0.147 4.147 16 C -0.080 4.080 17 C -0.084 4.084 18 Cl -0.024 7.024 19 C -0.065 4.065 20 C -0.051 4.051 21 C -0.067 4.067 22 N -0.175 5.175 23 N -0.042 5.042 24 N -0.045 5.045 25 H 0.356 0.644 26 N -0.135 5.135 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.127 0.873 30 H 0.270 0.730 31 H 0.160 0.840 32 H 0.180 0.820 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.134 -24.519 -2.983 27.093 hybrid contribution 2.021 0.859 -0.255 2.211 sum 13.155 -23.660 -3.238 27.264 Atomic orbital electron populations 1.70155 1.07864 1.28692 1.47918 1.26078 0.95947 1.03165 0.93735 0.85042 0.77853 0.75883 0.79470 1.18825 1.20360 1.18648 1.23180 0.95415 0.92060 1.58982 0.89953 1.85450 1.09509 0.98758 1.97060 1.23351 1.04115 0.93475 1.07155 1.20231 0.86095 0.86480 0.74360 1.90688 1.16529 1.85538 1.47777 1.43610 1.12037 1.02857 1.71754 1.17912 0.94811 0.83770 0.94803 1.21262 0.95762 0.97121 1.00509 1.21318 1.00089 0.90471 0.96084 1.20681 0.96204 0.87648 1.03874 1.98380 1.87065 1.19686 1.97223 1.20919 0.94044 0.94362 0.97153 1.16865 0.91842 0.94374 1.02060 1.23400 0.97262 0.86744 0.99284 1.75843 1.02325 1.21722 1.17624 1.78901 1.13157 1.03026 1.09152 1.47789 1.17592 1.04660 1.34469 0.64377 1.74884 0.98765 1.24026 1.15863 0.91957 0.86708 0.87277 0.73001 0.84004 0.82035 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.46 13.22 21.65 0.29 -55.17 16 2 C 0.02 0.89 5.49 84.86 0.47 1.36 16 3 Si 1.00 43.52 29.55 68.60 2.03 45.55 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.55 -31.17 9.50 67.95 0.65 -30.53 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.13 -7.37 20.57 -56.49 -1.16 -8.53 16 10 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 11 C 0.54 20.07 7.69 87.66 0.67 20.74 16 12 O -0.53 -23.01 13.30 -3.07 -0.04 -23.06 16 13 N -0.65 -19.03 4.72 -302.94 -1.43 -20.46 16 14 C 0.19 4.95 6.31 38.39 0.24 5.19 16 15 C -0.13 -3.28 8.69 22.36 0.19 -3.09 16 16 C -0.06 -1.21 9.81 22.31 0.22 -0.99 16 17 C -0.06 -1.04 6.31 22.31 0.14 -0.90 16 18 Cl -0.05 -0.83 28.95 -2.72 -0.08 -0.91 16 19 C -0.04 -0.80 9.47 22.48 0.21 -0.59 16 20 C -0.05 -1.01 5.89 -19.93 -0.12 -1.13 16 21 C 0.21 4.63 7.87 137.34 1.08 5.72 16 22 N -0.30 -7.14 9.83 -52.21 -0.51 -7.66 16 23 N -0.05 -0.90 13.47 37.02 0.50 -0.40 16 24 N -0.19 -2.31 7.90 37.02 0.29 -2.02 16 25 H 0.50 0.76 8.96 -347.53 -3.12 -2.36 16 26 N -0.28 -4.70 12.08 -52.16 -0.63 -5.33 16 27 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 29 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 30 H 0.43 11.07 6.51 -92.71 -0.60 10.47 16 31 H 0.14 4.30 6.22 -2.91 -0.02 4.28 16 32 H 0.16 2.56 8.06 -2.92 -0.02 2.54 16 33 H 0.16 2.36 7.88 -2.91 -0.02 2.34 16 Total: -1.00 -75.09 328.14 0.95 -74.14 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -2.50 Total: 12.84 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 4.20 Total: -8.99 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -1.50 Total: -91.04 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.04 Total: -23.06 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -7.37 SS G_CDS: -1.16 Total: -8.53 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -75.09 0.95 -74.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581858765.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.747 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds