Wall clock time and date at job start Tue Mar 31 2020 22:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86804 * 120.00166 * 2 1 4 4 H 1.48498 * 109.47043 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47142 * 119.99737 * 3 2 1 6 6 H 1.48503 * 109.47079 * 240.00158 * 3 2 1 7 7 C 1.39009 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00539 * 185.41243 * 7 2 1 9 9 N 1.36920 * 119.99659 * 5.41436 * 7 2 1 10 10 C 1.34776 * 119.99644 * 214.01523 * 9 7 2 11 11 O 1.21643 * 120.00445 * 3.36440 * 10 9 7 12 12 C 1.47338 * 119.99636 * 183.36196 * 10 9 7 13 13 C 1.39954 * 120.17539 * 305.71405 * 12 10 9 14 14 C 1.37759 * 120.02821 * 179.71608 * 13 12 10 15 15 Br 1.89102 * 119.80052 * 180.27782 * 14 13 12 16 16 C 1.38695 * 120.39473 * 0.56750 * 14 13 12 17 17 C 1.38472 * 120.35184 * 359.71428 * 16 14 13 18 18 N 1.40017 * 120.01646 * 180.02562 * 17 16 14 19 19 C 1.39548 * 119.96160 * 0.02562 * 17 16 14 20 20 N 1.39199 * 120.19525 * 180.02562 * 19 17 16 21 21 C 1.46493 * 120.00006 * 34.01769 * 9 7 2 22 22 C 1.53000 * 117.49974 * 130.18331 * 21 9 7 23 23 C 1.52997 * 117.50261 * 61.52158 * 21 9 7 24 24 H 0.97000 * 119.99656 * 354.99891 * 1 2 3 25 25 H 1.07994 * 119.98358 * 0.02562 * 13 12 10 26 26 H 1.07997 * 119.82021 * 179.69389 * 16 14 13 27 27 H 0.97012 * 119.99784 * 179.97438 * 18 17 16 28 28 H 0.96998 * 120.00448 * 359.97438 * 18 17 16 29 29 H 0.97009 * 119.99691 * 184.98129 * 20 19 17 30 30 H 0.96995 * 120.00120 * 4.97869 * 20 19 17 31 31 H 1.09005 * 115.54897 * 275.84700 * 21 9 7 32 32 H 1.08996 * 117.49875 * 359.97438 * 22 21 9 33 33 H 1.09002 * 117.49962 * 145.01583 * 22 21 9 34 34 H 1.08997 * 117.49660 * 214.97978 * 23 21 9 35 35 H 1.09000 * 117.49374 * 359.97281 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 1.2830 2.7465 -0.0006 5 1 3.1017 1.6964 1.2125 6 1 3.1017 1.6964 -1.2125 7 6 2.0090 -1.2038 0.0005 8 1 3.0854 -1.2060 0.0888 9 7 1.3289 -2.3870 -0.1108 10 6 1.7769 -3.4846 0.5303 11 8 2.7499 -3.4102 1.2566 12 6 1.0880 -4.7747 0.3515 13 6 -0.2871 -4.8769 0.5908 14 6 -0.9293 -6.0833 0.4170 15 35 -2.7890 -6.2123 0.7345 16 6 -0.2188 -7.2051 0.0164 17 6 1.1433 -7.1235 -0.2192 18 7 1.8535 -8.2602 -0.6239 19 6 1.8077 -5.9076 -0.0529 20 7 3.1767 -5.8199 -0.2889 21 6 0.1145 -2.4598 -0.9268 22 6 0.0171 -3.5940 -1.9491 23 6 0.2476 -2.1560 -2.4204 24 1 -0.4849 0.8369 0.0732 25 1 -0.8460 -4.0086 0.9069 26 1 -0.7307 -8.1473 -0.1122 27 1 2.8077 -8.2027 -0.7892 28 1 1.3915 -9.1053 -0.7390 29 1 3.6488 -4.9930 -0.1034 30 1 3.6586 -6.5856 -0.6387 31 1 -0.8050 -2.1497 -0.4302 32 1 0.8569 -4.2858 -2.0147 33 1 -0.9663 -4.0298 -2.1252 34 1 -0.5843 -1.6464 -2.9064 35 1 1.2388 -1.9016 -2.7958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583526770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:23 Heat of formation + Delta-G solvation = 37.569158 kcal Electronic energy + Delta-G solvation = -22012.361428 eV Core-core repulsion = 18671.696053 eV Total energy + Delta-G solvation = -3340.665375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.93724 -38.08837 -36.04953 -34.70686 -33.73112 -32.99551 -31.14058 -30.64481 -29.04000 -27.10749 -25.28902 -23.18529 -21.60282 -21.41190 -21.09619 -19.17668 -17.72971 -16.96319 -16.57714 -16.48917 -15.36574 -15.21214 -14.93310 -14.20499 -14.09367 -14.03804 -13.72841 -13.39057 -13.05876 -12.60998 -12.13182 -11.55600 -11.42054 -11.32539 -11.10295 -11.04970 -10.76712 -10.55935 -10.46105 -10.37272 -9.94582 -9.77518 -9.56002 -9.26903 -8.87601 -8.46772 -7.78086 -7.59009 -6.72837 -6.30306 -3.96951 1.55667 1.85359 2.07390 3.19183 3.24928 3.27846 3.71570 3.85458 4.10496 4.22332 4.31688 4.77321 4.77715 5.07007 5.21484 5.54996 5.56730 5.83875 5.87183 5.93027 6.05089 6.13457 6.29282 6.38787 6.52533 6.68507 6.71930 6.93686 6.94967 7.29460 7.38798 7.54612 7.79269 7.86125 8.04791 8.18908 8.48439 9.15198 9.37021 9.95877 10.74697 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.004990 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.475901 B = 5610.358147 C = 6846.153769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.046 3.954 3 Si 0.923 3.077 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.312 4.312 8 H 0.092 0.908 9 N -0.405 5.405 10 C 0.500 3.500 11 O -0.584 6.584 12 C -0.127 4.127 13 C -0.050 4.050 14 C -0.107 4.107 15 Br -0.072 7.072 16 C -0.125 4.125 17 C 0.137 3.863 18 N -0.885 5.885 19 C 0.205 3.795 20 N -0.866 5.866 21 C 0.126 3.874 22 C -0.204 4.204 23 C -0.169 4.169 24 H 0.269 0.731 25 H 0.132 0.868 26 H 0.124 0.876 27 H 0.390 0.610 28 H 0.397 0.603 29 H 0.412 0.588 30 H 0.387 0.613 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.654 -14.334 -3.712 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.159 4.159 3 Si 0.749 3.251 4 H -0.209 1.209 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.439 4.439 8 H 0.110 0.890 9 N -0.121 5.121 10 C 0.289 3.711 11 O -0.470 6.470 12 C -0.137 4.137 13 C -0.072 4.072 14 C -0.188 4.188 15 Br 0.013 6.987 16 C -0.151 4.151 17 C 0.032 3.968 18 N -0.429 5.429 19 C 0.095 3.905 20 N -0.408 5.408 21 C 0.021 3.979 22 C -0.242 4.242 23 C -0.207 4.207 24 H 0.080 0.920 25 H 0.150 0.850 26 H 0.142 0.858 27 H 0.218 0.782 28 H 0.225 0.775 29 H 0.245 0.755 30 H 0.214 0.786 31 H 0.138 0.862 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.096 -14.051 -3.284 15.000 hybrid contribution 1.187 0.617 -0.331 1.378 sum -2.909 -13.435 -3.614 14.213 Atomic orbital electron populations 1.69790 1.05921 1.27907 1.47107 1.25394 0.95468 0.99514 0.95563 0.86065 0.79069 0.80894 0.79039 1.20891 1.19783 1.19935 1.19376 0.92094 0.81801 1.50663 0.89005 1.42927 1.22306 1.08064 1.38849 1.17739 0.86765 0.83644 0.82997 1.90622 1.29780 1.85702 1.40853 1.19403 0.93263 0.93747 1.07294 1.20827 0.92624 0.96099 0.97676 1.20851 0.89536 0.96235 1.12208 1.96579 1.07745 1.98786 1.95598 1.20091 0.91540 0.97818 1.05643 1.16951 0.91095 0.86152 1.02643 1.42049 1.10485 1.09268 1.81095 1.17289 0.84794 0.91274 0.97115 1.42309 1.05635 1.18540 1.74305 1.21490 0.90966 0.98466 0.87003 1.23440 1.01977 0.92076 1.06666 1.22917 1.01949 0.96800 0.99039 0.92030 0.84971 0.85796 0.78202 0.77538 0.75513 0.78603 0.86213 0.89733 0.89280 0.89693 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.72 11.18 55.50 0.62 -22.10 16 2 C 0.05 1.19 5.33 -17.45 -0.09 1.10 16 3 Si 0.92 20.49 29.56 -169.99 -5.02 15.47 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 7 C -0.31 -8.43 8.88 -14.99 -0.13 -8.57 16 8 H 0.09 2.57 7.65 -52.49 -0.40 2.16 16 9 N -0.40 -10.10 2.89 -108.97 -0.31 -10.42 16 10 C 0.50 12.11 6.40 -12.56 -0.08 12.03 16 11 O -0.58 -15.79 15.62 5.24 0.08 -15.71 16 12 C -0.13 -2.52 3.39 -104.82 -0.36 -2.88 16 13 C -0.05 -0.92 6.99 -39.11 -0.27 -1.19 16 14 C -0.11 -1.69 6.21 -39.59 -0.25 -1.93 16 15 Br -0.07 -1.01 33.68 -68.01 -2.29 -3.30 16 16 C -0.12 -1.76 9.61 -39.33 -0.38 -2.14 16 17 C 0.14 1.93 6.77 -83.54 -0.57 1.36 16 18 N -0.88 -8.80 9.09 32.52 0.30 -8.51 16 19 C 0.21 3.48 6.44 -83.30 -0.54 2.94 16 20 N -0.87 -13.14 8.94 32.69 0.29 -12.85 16 21 C 0.13 2.78 2.60 -67.94 -0.18 2.61 16 22 C -0.20 -3.80 7.72 -26.69 -0.21 -4.00 16 23 C -0.17 -3.41 10.26 -26.70 -0.27 -3.69 16 24 H 0.27 6.73 8.32 -40.82 -0.34 6.39 16 25 H 0.13 2.60 7.29 -52.49 -0.38 2.22 16 26 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 27 H 0.39 3.30 7.02 -40.81 -0.29 3.01 16 28 H 0.40 3.07 8.84 -40.82 -0.36 2.71 16 29 H 0.41 7.28 6.81 -40.82 -0.28 7.01 16 30 H 0.39 4.36 7.02 -40.82 -0.29 4.07 16 31 H 0.12 2.84 7.17 -51.93 -0.37 2.47 16 32 H 0.08 1.62 6.73 -51.93 -0.35 1.27 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -29.64 312.20 -8.50 -38.14 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -3.54 Total: 18.91 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -3.32 Total: -4.35 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.89 Total: -53.86 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.08 Total: -15.71 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -2.29 Total: -3.30 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.64 -8.50 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583526770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.708 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds