Wall clock time and date at job start Tue Mar 31 2020 22:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31390 * 1 3 3 Si 1.86804 * 120.00166 * 2 1 4 4 H 1.48498 * 109.47043 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47142 * 119.99737 * 3 2 1 6 6 H 1.48503 * 109.47079 * 240.00158 * 3 2 1 7 7 C 1.39009 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00539 * 185.41243 * 7 2 1 9 9 N 1.36920 * 119.99659 * 5.41436 * 7 2 1 10 10 C 1.34776 * 119.99644 * 214.01523 * 9 7 2 11 11 O 1.21643 * 120.00445 * 3.36440 * 10 9 7 12 12 C 1.47338 * 119.99636 * 183.36196 * 10 9 7 13 13 C 1.39954 * 120.17539 * 305.71405 * 12 10 9 14 14 C 1.37759 * 120.02821 * 179.71608 * 13 12 10 15 15 Br 1.89102 * 119.80052 * 180.27782 * 14 13 12 16 16 C 1.38695 * 120.39473 * 0.56750 * 14 13 12 17 17 C 1.38472 * 120.35184 * 359.71428 * 16 14 13 18 18 N 1.40017 * 120.01646 * 180.02562 * 17 16 14 19 19 C 1.39548 * 119.96160 * 0.02562 * 17 16 14 20 20 N 1.39199 * 120.19525 * 180.02562 * 19 17 16 21 21 C 1.46493 * 120.00006 * 34.01769 * 9 7 2 22 22 C 1.53000 * 117.49974 * 130.18331 * 21 9 7 23 23 C 1.52997 * 117.50261 * 61.52158 * 21 9 7 24 24 H 0.97000 * 119.99656 * 354.99891 * 1 2 3 25 25 H 1.07994 * 119.98358 * 0.02562 * 13 12 10 26 26 H 1.07997 * 119.82021 * 179.69389 * 16 14 13 27 27 H 0.97012 * 119.99784 * 179.97438 * 18 17 16 28 28 H 0.96998 * 120.00448 * 359.97438 * 18 17 16 29 29 H 0.97009 * 119.99691 * 184.98129 * 20 19 17 30 30 H 0.96995 * 120.00120 * 4.97869 * 20 19 17 31 31 H 1.09005 * 115.54897 * 275.84700 * 21 9 7 32 32 H 1.08996 * 117.49875 * 359.97438 * 22 21 9 33 33 H 1.09002 * 117.49962 * 145.01583 * 22 21 9 34 34 H 1.08997 * 117.49660 * 214.97978 * 23 21 9 35 35 H 1.09000 * 117.49374 * 359.97281 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 1.2830 2.7465 -0.0006 5 1 3.1017 1.6964 1.2125 6 1 3.1017 1.6964 -1.2125 7 6 2.0090 -1.2038 0.0005 8 1 3.0854 -1.2060 0.0888 9 7 1.3289 -2.3870 -0.1108 10 6 1.7769 -3.4846 0.5303 11 8 2.7499 -3.4102 1.2566 12 6 1.0880 -4.7747 0.3515 13 6 -0.2871 -4.8769 0.5908 14 6 -0.9293 -6.0833 0.4170 15 35 -2.7890 -6.2123 0.7345 16 6 -0.2188 -7.2051 0.0164 17 6 1.1433 -7.1235 -0.2192 18 7 1.8535 -8.2602 -0.6239 19 6 1.8077 -5.9076 -0.0529 20 7 3.1767 -5.8199 -0.2889 21 6 0.1145 -2.4598 -0.9268 22 6 0.0171 -3.5940 -1.9491 23 6 0.2476 -2.1560 -2.4204 24 1 -0.4849 0.8369 0.0732 25 1 -0.8460 -4.0086 0.9069 26 1 -0.7307 -8.1473 -0.1122 27 1 2.8077 -8.2027 -0.7892 28 1 1.3915 -9.1053 -0.7390 29 1 3.6488 -4.9930 -0.1034 30 1 3.6586 -6.5856 -0.6387 31 1 -0.8050 -2.1497 -0.4302 32 1 0.8569 -4.2858 -2.0147 33 1 -0.9663 -4.0298 -2.1252 34 1 -0.5843 -1.6464 -2.9064 35 1 1.2388 -1.9016 -2.7958 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583526770.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:22 Heat of formation + Delta-G solvation = 17.328963 kcal Electronic energy + Delta-G solvation = -22013.239109 eV Core-core repulsion = 18671.696053 eV Total energy + Delta-G solvation = -3341.543056 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 339.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42254 -39.63285 -37.82999 -35.92774 -35.19577 -34.60131 -32.97121 -31.97090 -30.27171 -28.35371 -27.14624 -24.71362 -23.15262 -23.05403 -22.42921 -20.82269 -18.97493 -18.71943 -18.01697 -17.81665 -17.19096 -16.57209 -16.19992 -15.89261 -15.80496 -15.40180 -15.02513 -14.83837 -14.60945 -14.26274 -13.86002 -13.18552 -12.93259 -12.70672 -12.65289 -12.55981 -12.49387 -12.25300 -12.13221 -11.68943 -11.45689 -11.17065 -11.09654 -10.74266 -10.61039 -10.28107 -9.53938 -9.02794 -8.27424 -7.87279 -6.02059 0.24948 0.56806 0.86133 1.40552 1.41509 1.50766 2.05070 2.27872 2.77007 2.85606 2.97362 3.10258 3.19284 3.22634 3.79947 4.16288 4.22495 4.32545 4.36756 4.54107 4.58132 4.81680 4.84331 4.92926 5.07662 5.23058 5.37370 5.40428 5.46615 5.53506 5.67732 6.15918 6.26438 6.56340 6.66382 6.91093 7.08118 7.18562 7.47146 8.05916 8.75779 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.014214 B = 0.004990 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.475901 B = 5610.358147 C = 6846.153769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.012 3.988 3 Si 0.981 3.019 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.344 4.344 8 H 0.069 0.931 9 N -0.417 5.417 10 C 0.495 3.505 11 O -0.626 6.626 12 C -0.154 4.154 13 C -0.064 4.064 14 C -0.104 4.104 15 Br -0.054 7.054 16 C -0.117 4.117 17 C 0.154 3.846 18 N -0.865 5.865 19 C 0.196 3.804 20 N -0.861 5.861 21 C 0.108 3.892 22 C -0.162 4.162 23 C -0.169 4.169 24 H 0.272 0.728 25 H 0.108 0.892 26 H 0.157 0.843 27 H 0.400 0.600 28 H 0.413 0.587 29 H 0.400 0.600 30 H 0.405 0.595 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 -16.609 -4.941 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.087 0.913 9 N -0.133 5.133 10 C 0.286 3.714 11 O -0.515 6.515 12 C -0.164 4.164 13 C -0.087 4.087 14 C -0.186 4.186 15 Br 0.031 6.969 16 C -0.143 4.143 17 C 0.046 3.954 18 N -0.411 5.411 19 C 0.086 3.914 20 N -0.402 5.402 21 C 0.003 3.997 22 C -0.200 4.200 23 C -0.207 4.207 24 H 0.082 0.918 25 H 0.127 0.873 26 H 0.175 0.825 27 H 0.229 0.771 28 H 0.244 0.756 29 H 0.230 0.770 30 H 0.236 0.764 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.858 -16.396 -4.554 17.696 hybrid contribution 1.410 1.190 0.084 1.847 sum -3.448 -15.206 -4.470 16.220 Atomic orbital electron populations 1.69891 1.06685 1.28643 1.46930 1.26069 0.96320 1.01935 0.94816 0.85189 0.78071 0.77406 0.78824 1.19642 1.20451 1.19109 1.19375 0.91590 0.83578 1.52606 0.91300 1.43077 1.22852 1.07801 1.39543 1.18457 0.86113 0.85074 0.81799 1.90562 1.31728 1.86771 1.42426 1.19022 0.93982 0.92424 1.10975 1.20560 0.92048 0.96611 0.99443 1.20927 0.90590 0.95697 1.11386 1.96595 1.06061 1.98674 1.95548 1.20420 0.91416 0.98392 1.04111 1.16942 0.91246 0.86169 1.01004 1.42009 1.10996 1.08606 1.79443 1.17393 0.85240 0.91520 0.97266 1.42264 1.05251 1.18733 1.73989 1.21279 0.89133 1.01916 0.87359 1.23340 1.02991 0.90911 1.02742 1.22939 1.01762 0.98406 0.97563 0.91788 0.87346 0.82516 0.77057 0.75604 0.77003 0.76423 0.88339 0.89914 0.86905 0.88278 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.27 11.18 21.67 0.24 -47.02 16 2 C 0.01 0.65 5.33 84.94 0.45 1.11 16 3 Si 0.98 42.86 29.56 68.60 2.03 44.89 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.34 -19.50 8.88 84.08 0.75 -18.75 16 8 H 0.07 4.11 7.65 -2.91 -0.02 4.08 16 9 N -0.42 -21.76 2.89 -616.91 -1.78 -23.54 16 10 C 0.50 25.09 6.40 86.64 0.55 25.65 16 11 O -0.63 -35.73 15.62 -4.17 -0.07 -35.80 16 12 C -0.15 -6.19 3.39 -20.00 -0.07 -6.25 16 13 C -0.06 -2.35 6.99 22.57 0.16 -2.19 16 14 C -0.10 -3.09 6.21 22.27 0.14 -2.95 16 15 Br -0.05 -1.40 33.68 -20.37 -0.69 -2.08 16 16 C -0.12 -2.88 9.61 22.44 0.22 -2.66 16 17 C 0.15 3.85 6.77 38.21 0.26 4.11 16 18 N -0.86 -13.56 9.09 -51.03 -0.46 -14.02 16 19 C 0.20 6.43 6.44 38.76 0.25 6.68 16 20 N -0.86 -25.49 8.94 -50.49 -0.45 -25.95 16 21 C 0.11 4.89 2.60 44.99 0.12 5.01 16 22 C -0.16 -5.92 7.72 30.62 0.24 -5.69 16 23 C -0.17 -6.82 10.26 30.62 0.31 -6.51 16 24 H 0.27 13.76 8.32 -92.71 -0.77 12.99 16 25 H 0.11 4.45 7.29 -2.91 -0.02 4.43 16 26 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.40 5.17 7.02 -92.70 -0.65 4.52 16 28 H 0.41 4.30 8.84 -92.71 -0.82 3.48 16 29 H 0.40 14.46 6.81 -92.70 -0.63 13.83 16 30 H 0.40 8.37 7.02 -92.71 -0.65 7.72 16 31 H 0.10 4.87 7.17 -2.38 -0.02 4.85 16 32 H 0.08 3.09 6.73 -2.39 -0.02 3.07 16 33 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 35 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -67.24 312.20 0.64 -66.61 By element: Atomic # 1 Polarization: 40.93 SS G_CDS: -1.56 Total: 39.37 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 3.37 Total: -2.46 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -2.45 Total: -110.53 kcal Atomic # 8 Polarization: -35.73 SS G_CDS: -0.07 Total: -35.80 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 35 Polarization: -1.40 SS G_CDS: -0.69 Total: -2.08 kcal Total: -67.24 0.64 -66.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583526770.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.938 kcal (2) G-P(sol) polarization free energy of solvation -67.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds