Wall clock time and date at job start Tue Mar 31 2020 22:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32031 * 124.80401 * 2 1 4 4 C 1.41137 * 115.75935 * 180.14955 * 3 2 1 5 5 S 1.77281 * 137.57004 * 179.23514 * 4 3 2 6 6 C 1.75325 * 91.41573 * 180.02562 * 5 4 3 7 7 C 1.32023 * 110.38952 * 359.97438 * 6 5 4 8 8 C 1.50696 * 122.11561 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47226 * 265.02661 * 8 7 6 10 10 O 1.21297 * 119.99829 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00400 * 179.72531 * 9 8 7 12 12 C 1.37097 * 120.00320 * 180.27409 * 11 9 8 13 13 H 1.07996 * 120.00111 * 322.21014 * 12 11 9 14 14 C 1.38943 * 119.99871 * 142.20464 * 12 11 9 15 15 N 1.31418 * 119.99953 * 158.61361 * 14 12 11 16 16 Si 1.86794 * 120.00356 * 338.61225 * 14 12 11 17 17 H 1.48501 * 109.47245 * 95.99535 * 16 14 12 18 18 H 1.48499 * 109.47570 * 215.99684 * 16 14 12 19 19 H 1.48508 * 109.46945 * 335.99903 * 16 14 12 20 20 C 1.46498 * 119.99554 * 0.27604 * 11 9 8 21 21 C 1.50703 * 109.47130 * 83.26226 * 20 11 9 22 22 O 1.20821 * 120.00072 * 359.97438 * 21 20 11 23 23 O 1.34234 * 119.99651 * 180.02562 * 21 20 11 24 24 C 1.36764 * 113.15855 * 359.48292 * 4 3 2 25 25 S 1.75322 * 124.80429 * 179.42248 * 2 1 3 26 26 H 1.09000 * 109.47241 * 180.55387 * 1 2 3 27 27 H 1.08998 * 109.46552 * 300.55113 * 1 2 3 28 28 H 1.09004 * 109.47066 * 60.55278 * 1 2 3 29 29 H 1.07991 * 122.12204 * 359.40355 * 3 2 1 30 30 H 1.07996 * 124.80144 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47467 * 145.02960 * 8 7 6 32 32 H 1.08995 * 109.47443 * 25.02442 * 8 7 6 33 33 H 0.96996 * 120.00100 * 180.02562 * 15 14 12 34 34 H 1.09005 * 109.47062 * 203.25632 * 20 11 9 35 35 H 1.09003 * 109.47317 * 323.25675 * 20 11 9 36 36 H 0.96698 * 116.99368 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.0841 0.0000 4 6 3.6544 0.8622 -0.0033 5 16 5.1346 1.8377 -0.0210 6 6 6.1353 0.3981 -0.0092 7 6 5.3817 -0.6858 0.0070 8 6 5.9724 -2.0721 0.0196 9 6 6.0486 -2.5986 -1.3904 10 8 5.6609 -1.9153 -2.3146 11 7 6.5522 -3.8265 -1.6250 12 6 6.6267 -4.3032 -2.9083 13 1 5.8360 -4.0869 -3.6115 14 6 7.7195 -5.0644 -3.3043 15 7 7.6233 -5.8601 -4.3458 16 14 9.3254 -4.9570 -2.3563 17 1 9.3905 -6.0616 -1.3659 18 1 10.4661 -5.0707 -3.3002 19 1 9.3963 -3.6532 -1.6488 20 6 7.0199 -4.6519 -0.5087 21 6 5.8481 -5.3682 0.1118 22 8 4.7364 -5.2055 -0.3324 23 8 6.0395 -6.1861 1.1589 24 6 3.9879 -0.4641 0.0053 25 16 2.5077 -1.4395 0.0145 26 1 -0.3634 -1.0276 0.0099 27 1 -0.3632 0.5224 0.8850 28 1 -0.3633 0.5052 -0.8949 29 1 1.8374 2.0776 -0.0095 30 1 7.2152 0.3981 -0.0144 31 1 5.3432 -2.7298 0.6194 32 1 6.9737 -2.0366 0.4487 33 1 8.3861 -6.3918 -4.6220 34 1 7.7404 -5.3834 -0.8747 35 1 7.4948 -4.0166 0.2389 36 1 5.2576 -6.6231 1.5232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600311319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:45 Heat of formation + Delta-G solvation = -51.786676 kcal Electronic energy + Delta-G solvation = -24710.075807 eV Core-core repulsion = 20992.467185 eV Total energy + Delta-G solvation = -3717.608623 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10681 -39.12751 -38.16893 -35.89084 -35.50809 -34.69939 -32.24984 -31.19005 -28.82346 -28.06443 -26.19669 -24.85382 -23.17991 -21.79984 -20.95079 -19.04720 -18.71600 -17.84526 -17.47454 -17.35364 -16.59702 -16.09988 -15.90933 -15.47532 -14.97949 -14.44374 -14.22794 -14.09494 -14.08057 -13.64537 -13.43070 -13.01332 -12.78687 -12.74515 -12.49829 -12.25269 -12.20407 -11.93661 -11.67207 -11.54429 -11.17228 -10.95680 -10.82434 -10.68632 -10.67663 -10.43933 -10.16403 -10.01946 -9.21432 -9.06819 -8.66122 -8.15124 -7.96655 -7.43544 -6.47427 -4.07335 0.65649 1.29160 1.87294 1.95775 2.23587 2.44002 2.61767 2.73139 2.91140 3.08307 3.13343 3.20220 3.75285 4.01983 4.29418 4.73260 4.88852 4.97395 5.04019 5.20926 5.28327 5.37053 5.40598 5.48415 5.51574 5.61148 5.65068 5.69354 5.78125 5.82054 6.05866 6.21805 6.36311 6.47127 6.82237 7.39711 8.16359 8.27718 8.38870 8.84755 9.17886 9.59007 10.64486 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.004206 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.790712 B = 6655.878975 C = 7408.441443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.177 4.177 3 C -0.100 4.100 4 C -0.167 4.167 5 S 0.120 5.880 6 C -0.191 4.191 7 C -0.023 4.023 8 C -0.095 4.095 9 C 0.486 3.514 10 O -0.533 6.533 11 N -0.453 5.453 12 C -0.312 4.312 13 H 0.108 0.892 14 C 0.059 3.941 15 N -0.857 5.857 16 Si 0.861 3.139 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.259 1.259 20 C 0.097 3.903 21 C 0.454 3.546 22 O -0.491 6.491 23 O -0.526 6.526 24 C -0.144 4.144 25 S 0.161 5.839 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.171 0.829 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.276 0.724 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 8.843 14.926 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.296 4.296 3 C -0.133 4.133 4 C -0.292 4.292 5 S 0.382 5.618 6 C -0.328 4.328 7 C -0.038 4.038 8 C -0.138 4.138 9 C 0.274 3.726 10 O -0.412 6.412 11 N -0.176 5.176 12 C -0.439 4.439 13 H 0.126 0.874 14 C -0.147 4.147 15 N -0.492 5.492 16 Si 0.687 3.313 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.183 1.183 20 C -0.030 4.030 21 C 0.293 3.707 22 O -0.376 6.376 23 O -0.337 6.337 24 C -0.270 4.270 25 S 0.424 5.576 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.155 0.845 30 H 0.188 0.812 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.122 0.878 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.712 9.333 13.967 17.743 hybrid contribution 0.593 -0.644 0.536 1.026 sum -5.120 8.689 14.502 17.664 Atomic orbital electron populations 1.20320 0.87468 1.03081 1.02912 1.24056 1.00212 0.96353 1.08985 1.19101 0.89295 0.99475 1.05458 1.22737 0.97903 0.95589 1.12979 1.83772 0.93386 1.07537 1.77075 1.24825 1.03362 0.94501 1.10107 1.17551 0.89388 0.95283 1.01562 1.20614 1.02074 0.93107 0.98015 1.19957 0.81881 0.81360 0.89412 1.90612 1.48464 1.56698 1.45377 1.43372 1.58051 1.11081 1.05109 1.19046 1.06905 1.32007 0.85941 0.87403 1.25387 0.97815 0.95264 0.96258 1.69751 1.31291 1.21853 1.26338 0.87184 0.84649 0.79257 0.80233 1.19770 1.20576 1.18255 1.21653 0.93177 0.96439 0.91707 1.24673 0.92051 0.77010 0.76952 1.90727 1.26150 1.60848 1.59876 1.84581 1.44136 1.58196 1.46818 1.22649 0.97572 0.95721 1.11082 1.84494 0.92749 1.05866 1.74466 0.91239 0.90565 0.90451 0.84463 0.81181 0.89397 0.88432 0.91396 0.86732 0.87833 0.74080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.35 36.00 0.37 -0.37 16 2 C -0.18 -2.37 6.42 -36.23 -0.23 -2.60 16 3 C -0.10 -1.38 10.02 -40.40 -0.40 -1.78 16 4 C -0.17 -2.65 6.96 -39.02 -0.27 -2.92 16 5 S 0.12 1.67 23.34 -107.50 -2.51 -0.84 16 6 C -0.19 -2.93 10.79 28.81 0.31 -2.62 16 7 C -0.02 -0.41 4.32 -105.45 -0.46 -0.87 16 8 C -0.10 -1.69 4.56 -29.04 -0.13 -1.83 16 9 C 0.49 11.35 7.37 -10.98 -0.08 11.27 16 10 O -0.53 -14.57 15.91 5.54 0.09 -14.48 16 11 N -0.45 -10.86 1.74 -116.09 -0.20 -11.06 16 12 C -0.31 -8.78 9.36 -14.94 -0.14 -8.92 16 13 H 0.11 3.49 7.92 -52.49 -0.42 3.07 16 14 C 0.06 1.59 5.28 -17.47 -0.09 1.50 16 15 N -0.86 -24.41 13.96 55.50 0.77 -23.64 16 16 Si 0.86 19.04 24.97 -169.99 -4.24 14.79 16 17 H -0.27 -5.48 6.72 56.52 0.38 -5.10 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 20 C 0.10 1.87 4.33 -5.19 -0.02 1.85 16 21 C 0.45 8.38 7.65 36.01 0.28 8.65 16 22 O -0.49 -10.75 17.02 -18.75 -0.32 -11.07 16 23 O -0.53 -7.30 13.42 -39.27 -0.53 -7.83 16 24 C -0.14 -2.55 6.77 -39.02 -0.26 -2.81 16 25 S 0.16 2.63 23.31 -107.50 -2.51 0.13 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16 31 H 0.09 1.49 7.48 -51.93 -0.39 1.11 16 32 H 0.10 1.39 7.35 -51.93 -0.38 1.01 16 33 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.12 2.30 3.61 -51.93 -0.19 2.12 16 35 H 0.10 1.56 6.72 -51.93 -0.35 1.22 16 36 H 0.40 3.74 9.10 45.56 0.41 4.15 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -35.34 339.80 -8.04 -43.38 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.58 Total: 6.94 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.14 Total: -1.45 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.57 Total: -34.70 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.76 Total: -33.38 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.24 Total: 14.79 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -5.02 Total: -0.71 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.34 -8.04 -43.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600311319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.410 kcal (2) G-P(sol) polarization free energy of solvation -35.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds