Wall clock time and date at job start Tue Mar 31 2020 22:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32031 * 124.80401 * 2 1 4 4 C 1.41137 * 115.75935 * 180.14955 * 3 2 1 5 5 S 1.77281 * 137.57004 * 179.23514 * 4 3 2 6 6 C 1.75325 * 91.41573 * 180.02562 * 5 4 3 7 7 C 1.32023 * 110.38952 * 359.97438 * 6 5 4 8 8 C 1.50696 * 122.11561 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47226 * 265.02661 * 8 7 6 10 10 O 1.21297 * 119.99829 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00400 * 179.72531 * 9 8 7 12 12 C 1.37097 * 120.00320 * 180.27409 * 11 9 8 13 13 H 1.07996 * 120.00111 * 322.21014 * 12 11 9 14 14 C 1.38943 * 119.99871 * 142.20464 * 12 11 9 15 15 N 1.31418 * 119.99953 * 158.61361 * 14 12 11 16 16 Si 1.86794 * 120.00356 * 338.61225 * 14 12 11 17 17 H 1.48501 * 109.47245 * 95.99535 * 16 14 12 18 18 H 1.48499 * 109.47570 * 215.99684 * 16 14 12 19 19 H 1.48508 * 109.46945 * 335.99903 * 16 14 12 20 20 C 1.46498 * 119.99554 * 0.27604 * 11 9 8 21 21 C 1.50703 * 109.47130 * 83.26226 * 20 11 9 22 22 O 1.20821 * 120.00072 * 359.97438 * 21 20 11 23 23 O 1.34234 * 119.99651 * 180.02562 * 21 20 11 24 24 C 1.36764 * 113.15855 * 359.48292 * 4 3 2 25 25 S 1.75322 * 124.80429 * 179.42248 * 2 1 3 26 26 H 1.09000 * 109.47241 * 180.55387 * 1 2 3 27 27 H 1.08998 * 109.46552 * 300.55113 * 1 2 3 28 28 H 1.09004 * 109.47066 * 60.55278 * 1 2 3 29 29 H 1.07991 * 122.12204 * 359.40355 * 3 2 1 30 30 H 1.07996 * 124.80144 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.47467 * 145.02960 * 8 7 6 32 32 H 1.08995 * 109.47443 * 25.02442 * 8 7 6 33 33 H 0.96996 * 120.00100 * 180.02562 * 15 14 12 34 34 H 1.09005 * 109.47062 * 203.25632 * 20 11 9 35 35 H 1.09003 * 109.47317 * 323.25675 * 20 11 9 36 36 H 0.96698 * 116.99368 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.0841 0.0000 4 6 3.6544 0.8622 -0.0033 5 16 5.1346 1.8377 -0.0210 6 6 6.1353 0.3981 -0.0092 7 6 5.3817 -0.6858 0.0070 8 6 5.9724 -2.0721 0.0196 9 6 6.0486 -2.5986 -1.3904 10 8 5.6609 -1.9153 -2.3146 11 7 6.5522 -3.8265 -1.6250 12 6 6.6267 -4.3032 -2.9083 13 1 5.8360 -4.0869 -3.6115 14 6 7.7195 -5.0644 -3.3043 15 7 7.6233 -5.8601 -4.3458 16 14 9.3254 -4.9570 -2.3563 17 1 9.3905 -6.0616 -1.3659 18 1 10.4661 -5.0707 -3.3002 19 1 9.3963 -3.6532 -1.6488 20 6 7.0199 -4.6519 -0.5087 21 6 5.8481 -5.3682 0.1118 22 8 4.7364 -5.2055 -0.3324 23 8 6.0395 -6.1861 1.1589 24 6 3.9879 -0.4641 0.0053 25 16 2.5077 -1.4395 0.0145 26 1 -0.3634 -1.0276 0.0099 27 1 -0.3632 0.5224 0.8850 28 1 -0.3633 0.5052 -0.8949 29 1 1.8374 2.0776 -0.0095 30 1 7.2152 0.3981 -0.0144 31 1 5.3432 -2.7298 0.6194 32 1 6.9737 -2.0366 0.4487 33 1 8.3861 -6.3918 -4.6220 34 1 7.7404 -5.3834 -0.8747 35 1 7.4948 -4.0166 0.2389 36 1 5.2576 -6.6231 1.5232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600311319.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:44 Heat of formation + Delta-G solvation = -76.642960 kcal Electronic energy + Delta-G solvation = -24711.153657 eV Core-core repulsion = 20992.467185 eV Total energy + Delta-G solvation = -3718.686472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 339.043 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64806 -40.53624 -39.55781 -37.30198 -36.82045 -36.36378 -34.25187 -32.30894 -30.21658 -29.66282 -27.24457 -26.71358 -24.33733 -23.26720 -22.25957 -20.66597 -19.80378 -19.26002 -19.19222 -18.72472 -18.26548 -17.56317 -17.24546 -17.03689 -16.58887 -15.91658 -15.67239 -15.25080 -15.09564 -14.96249 -14.83727 -14.52646 -14.36337 -14.14684 -13.86938 -13.54840 -13.42959 -13.26606 -12.94036 -12.82712 -12.70318 -12.57007 -12.30601 -11.97826 -11.94289 -11.77765 -11.69402 -11.59687 -11.11051 -10.58302 -10.17048 -9.91857 -9.27991 -8.60195 -8.52861 -6.21017 -0.48797 0.13688 0.76863 0.81088 1.08824 1.15556 1.19724 1.26817 1.34461 1.47705 1.53706 1.65366 2.10071 2.18834 2.64480 2.97667 3.67312 3.72568 3.81001 3.93882 3.95515 4.09958 4.27878 4.32519 4.40906 4.42344 4.49315 4.64177 4.73892 4.95717 5.02146 5.11440 5.21755 5.37649 5.45328 5.60611 6.00911 6.42695 6.85672 6.99342 7.16985 7.72701 8.64626 Molecular weight = 339.04amu Principal moments of inertia in cm(-1) A = 0.014262 B = 0.004206 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.790712 B = 6655.878975 C = 7408.441443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.160 4.160 3 C -0.111 4.111 4 C -0.183 4.183 5 S 0.172 5.828 6 C -0.193 4.193 7 C -0.056 4.056 8 C -0.081 4.081 9 C 0.479 3.521 10 O -0.589 6.589 11 N -0.463 5.463 12 C -0.334 4.334 13 H 0.034 0.966 14 C 0.008 3.992 15 N -0.910 5.910 16 Si 0.937 3.063 17 H -0.229 1.229 18 H -0.283 1.283 19 H -0.236 1.236 20 C 0.087 3.913 21 C 0.465 3.535 22 O -0.537 6.537 23 O -0.503 6.503 24 C -0.175 4.175 25 S 0.095 5.905 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.169 0.831 30 H 0.197 0.803 31 H 0.093 0.907 32 H 0.141 0.859 33 H 0.282 0.718 34 H 0.114 0.886 35 H 0.158 0.842 36 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 10.136 18.414 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.279 4.279 3 C -0.143 4.143 4 C -0.309 4.309 5 S 0.434 5.566 6 C -0.330 4.330 7 C -0.071 4.071 8 C -0.124 4.124 9 C 0.270 3.730 10 O -0.471 6.471 11 N -0.186 5.186 12 C -0.461 4.461 13 H 0.052 0.948 14 C -0.194 4.194 15 N -0.547 5.547 16 Si 0.757 3.243 17 H -0.154 1.154 18 H -0.210 1.210 19 H -0.158 1.158 20 C -0.038 4.038 21 C 0.306 3.694 22 O -0.426 6.426 23 O -0.316 6.316 24 C -0.300 4.300 25 S 0.357 5.643 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.187 0.813 30 H 0.214 0.786 31 H 0.111 0.889 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.131 0.869 35 H 0.176 0.824 36 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -4.044 10.602 17.522 20.875 hybrid contribution -0.061 -1.026 -0.578 1.180 sum -4.105 9.576 16.944 19.891 Atomic orbital electron populations 1.20496 0.84598 1.03864 1.04818 1.24484 1.01706 0.94252 1.07451 1.19462 0.88557 1.00929 1.05336 1.23261 0.99642 0.95635 1.12320 1.83524 0.91570 1.05826 1.75642 1.25268 1.04859 0.94706 1.08171 1.17692 0.89756 0.95683 1.03945 1.20550 1.04710 0.93321 0.93793 1.20961 0.79986 0.80735 0.91358 1.90565 1.50528 1.58222 1.47786 1.43360 1.58369 1.12047 1.04779 1.18511 1.06225 1.33626 0.87787 0.94810 1.26306 1.01783 0.93633 0.97683 1.69890 1.32845 1.23008 1.28968 0.86005 0.77219 0.81631 0.79474 1.15355 1.20975 1.15817 1.21868 0.93429 0.97090 0.91405 1.24315 0.90902 0.76919 0.77292 1.90743 1.27790 1.62480 1.61541 1.84483 1.45319 1.56956 1.44844 1.22854 0.97841 0.96490 1.12860 1.84610 0.94622 1.09091 1.75947 0.91101 0.87888 0.88964 0.81330 0.78636 0.88875 0.84077 0.90824 0.86855 0.82425 0.71259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.35 71.24 0.74 -0.61 16 2 C -0.16 -4.16 6.42 24.76 0.16 -4.00 16 3 C -0.11 -2.89 10.02 22.06 0.22 -2.67 16 4 C -0.18 -5.64 6.96 22.64 0.16 -5.48 16 5 S 0.17 4.41 23.34 -56.49 -1.32 3.10 16 6 C -0.19 -5.53 10.79 66.90 0.72 -4.81 16 7 C -0.06 -1.94 4.32 -20.08 -0.09 -2.02 16 8 C -0.08 -2.79 4.56 29.10 0.13 -2.66 16 9 C 0.48 22.81 7.37 87.66 0.65 23.46 16 10 O -0.59 -34.00 15.91 -3.08 -0.05 -34.05 16 11 N -0.46 -22.45 1.74 -639.59 -1.11 -23.56 16 12 C -0.33 -19.90 9.36 84.04 0.79 -19.11 16 13 H 0.03 2.44 7.92 -2.91 -0.02 2.42 16 14 C 0.01 0.45 5.28 84.92 0.45 0.90 16 15 N -0.91 -54.21 13.96 21.66 0.30 -53.91 16 16 Si 0.94 38.08 24.97 68.60 1.71 39.80 16 17 H -0.23 -7.82 6.72 99.48 0.67 -7.16 16 18 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 19 H -0.24 -8.67 7.11 99.48 0.71 -7.96 16 20 C 0.09 3.15 4.33 85.63 0.37 3.52 16 21 C 0.46 16.38 7.65 71.24 0.54 16.93 16 22 O -0.54 -23.90 17.02 21.98 0.37 -23.52 16 23 O -0.50 -12.21 13.42 -51.46 -0.69 -12.90 16 24 C -0.17 -6.22 6.77 22.63 0.15 -6.07 16 25 S 0.10 3.24 23.31 -56.49 -1.32 1.92 16 26 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 30 H 0.20 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.09 3.08 7.48 -2.39 -0.02 3.07 16 32 H 0.14 3.45 7.35 -2.39 -0.02 3.43 16 33 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 34 H 0.11 4.16 3.61 -2.38 -0.01 4.15 16 35 H 0.16 3.94 6.72 -2.39 -0.02 3.92 16 36 H 0.43 6.54 9.10 -74.06 -0.67 5.86 16 Total: -1.00 -86.63 339.80 3.34 -83.29 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.45 Total: 22.49 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 4.99 Total: -2.64 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -0.81 Total: -77.47 kcal Atomic # 8 Polarization: -70.11 SS G_CDS: -0.37 Total: -70.47 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 1.71 Total: 39.80 kcal Atomic # 16 Polarization: 7.65 SS G_CDS: -2.64 Total: 5.02 kcal Total: -86.63 3.34 -83.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600311319.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.644 kcal (2) G-P(sol) polarization free energy of solvation -86.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds