Wall clock time and date at job start Tue Mar 31 2020 22:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48502 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47177 * 299.99984 * 3 2 1 6 6 H 1.48500 * 109.47330 * 60.00291 * 3 2 1 7 7 C 1.40302 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00678 * 170.14147 * 7 2 1 9 9 C 1.40546 * 119.99824 * 350.14542 * 7 2 1 10 10 C 1.44187 * 123.71146 * 336.48092 * 9 7 2 11 11 C 1.32761 * 114.42884 * 180.02562 * 10 9 7 12 12 S 1.75478 * 111.36284 * 0.02562 * 11 10 9 13 13 C 1.39547 * 123.71476 * 156.53368 * 9 7 2 14 14 C 1.46233 * 125.23143 * 359.97438 * 13 9 7 15 15 O 1.21765 * 119.99978 * 359.97438 * 14 13 9 16 16 N 1.34774 * 120.00457 * 179.97438 * 14 13 9 17 17 N 1.40097 * 120.00506 * 179.97438 * 16 14 13 18 18 C 1.38537 * 120.00302 * 180.02562 * 17 16 14 19 19 C 1.39588 * 120.47973 * 179.72613 * 18 17 16 20 20 C 1.38291 * 118.47956 * 179.73143 * 19 18 17 21 21 Cl 1.73596 * 120.37076 * 180.28296 * 20 19 18 22 22 N 1.32627 * 119.25792 * 0.53452 * 20 19 18 23 23 C 1.32462 * 120.90994 * 359.72426 * 22 20 19 24 24 N 1.38393 * 119.17460 * 179.97438 * 23 22 20 25 25 N 1.32466 * 121.66164 * 359.97438 * 23 22 20 26 26 H 0.97005 * 120.00157 * 359.97438 * 1 2 3 27 27 H 1.07999 * 122.78648 * 0.02562 * 10 9 7 28 28 H 1.08004 * 124.32222 * 180.02562 * 11 10 9 29 29 H 0.97007 * 119.99362 * 0.02562 * 16 14 13 30 30 H 0.97008 * 119.99484 * 359.97438 * 17 16 14 31 31 H 1.07998 * 120.75862 * 359.97438 * 19 18 17 32 32 H 0.96996 * 120.00656 * 180.02562 * 24 23 22 33 33 H 0.97008 * 119.99665 * 0.02772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0079 -1.2150 -0.0005 8 1 3.0759 -1.2219 -0.1607 9 6 1.3208 -2.4233 0.2072 10 6 0.0551 -2.5167 0.8915 11 6 -0.4291 -3.7493 0.9846 12 16 0.6430 -4.9159 0.2304 13 6 1.7889 -3.6648 -0.2250 14 6 3.0411 -3.8898 -0.9460 15 8 3.7669 -2.9495 -1.2139 16 7 3.3920 -5.1380 -1.3141 17 7 4.5914 -5.3535 -2.0052 18 6 4.9518 -6.6364 -2.3840 19 6 6.1417 -6.8618 -3.0780 20 6 6.4636 -8.1596 -3.4309 21 17 7.9350 -8.4968 -4.2882 22 7 5.6333 -9.1432 -3.1113 23 6 4.5080 -8.8981 -2.4568 24 7 3.6675 -9.9515 -2.1421 25 7 4.1669 -7.6700 -2.0959 26 1 -0.4850 0.8401 0.0004 27 1 -0.4567 -1.6554 1.2948 28 1 -1.3636 -4.0020 1.4635 29 1 2.8136 -5.8870 -1.1010 30 1 5.1692 -4.6042 -2.2193 31 1 6.7979 -6.0419 -3.3301 32 1 2.8403 -9.7858 -1.6635 33 1 3.9056 -10.8558 -2.4002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001633919005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:27 Heat of formation + Delta-G solvation = 71.646067 kcal Electronic energy + Delta-G solvation = -23091.921286 eV Core-core repulsion = 19306.373810 eV Total energy + Delta-G solvation = -3785.547476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.030 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.92759 -38.72924 -37.00453 -36.61307 -35.75468 -34.45088 -33.21108 -32.90232 -31.08704 -29.48981 -28.69539 -26.17159 -23.81698 -23.40244 -22.31238 -20.65889 -19.22480 -18.76967 -18.43947 -17.36649 -16.76048 -15.97543 -15.66963 -15.53401 -15.47603 -15.24610 -15.14863 -14.54941 -14.11045 -14.04504 -13.80940 -12.74323 -12.60063 -12.41167 -12.35071 -11.96000 -11.57019 -11.55939 -11.28904 -11.13755 -10.95510 -10.51560 -10.43725 -10.28452 -9.96719 -9.77219 -9.38891 -9.31571 -8.80307 -8.55709 -7.72535 -7.41069 -7.25158 -7.18203 -4.68827 1.04087 1.35271 1.47086 2.01354 2.33305 2.86188 2.91854 3.00768 3.01912 3.07856 3.50077 3.65044 3.74083 3.84642 4.08171 4.22058 4.75936 4.99946 5.10242 5.24315 5.36559 5.82551 5.96698 6.27867 6.64766 6.69437 6.98845 7.02882 7.06954 7.14758 7.17889 7.32523 7.52888 7.80754 8.18340 8.21779 8.38108 8.43254 8.57178 9.31112 9.70773 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.002812 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.209162 B = 9954.122644 C =11578.470506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.066 3.934 3 Si 0.926 3.074 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.370 4.370 8 H 0.114 0.886 9 C 0.145 3.855 10 C -0.101 4.101 11 C -0.200 4.200 12 S -0.045 6.045 13 C -0.427 4.427 14 C 0.601 3.399 15 O -0.565 6.565 16 N -0.540 5.540 17 N -0.483 5.483 18 C 0.492 3.508 19 C -0.328 4.328 20 C 0.296 3.704 21 Cl -0.023 7.023 22 N -0.614 5.614 23 C 0.628 3.372 24 N -0.817 5.817 25 N -0.626 5.626 26 H 0.290 0.710 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.425 0.575 30 H 0.444 0.556 31 H 0.151 0.849 32 H 0.417 0.583 33 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.373 -10.876 -2.914 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.157 4.157 3 Si 0.749 3.251 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.400 4.400 8 H 0.131 0.869 9 C 0.134 3.866 10 C -0.133 4.133 11 C -0.334 4.334 12 S 0.209 5.791 13 C -0.548 4.548 14 C 0.399 3.601 15 O -0.447 6.447 16 N -0.290 5.290 17 N -0.206 5.206 18 C 0.242 3.758 19 C -0.362 4.362 20 C 0.125 3.875 21 Cl 0.006 6.994 22 N -0.345 5.345 23 C 0.267 3.733 24 N -0.366 5.366 25 N -0.363 5.363 26 H 0.101 0.899 27 H 0.165 0.835 28 H 0.157 0.843 29 H 0.267 0.733 30 H 0.289 0.711 31 H 0.169 0.831 32 H 0.249 0.751 33 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.998 -12.241 -3.041 13.568 hybrid contribution 0.473 2.354 -0.035 2.402 sum 5.472 -9.887 -3.076 11.711 Atomic orbital electron populations 1.69666 1.08163 1.30635 1.30862 1.26428 0.94989 1.02803 0.91449 0.85928 0.81402 0.78907 0.78854 1.17506 1.19373 1.19323 1.20152 0.97871 0.88811 1.33170 0.86851 1.17893 0.89543 0.91502 0.87704 1.21702 0.96243 0.96190 0.99144 1.24986 1.03324 0.96881 1.08162 1.82836 1.17926 1.13464 1.64869 1.22105 1.04382 0.96078 1.32215 1.17023 0.85225 0.79572 0.78252 1.90677 1.53879 1.41019 1.59115 1.45188 1.13713 1.10991 1.59085 1.43135 1.16483 1.04837 1.56144 1.17748 0.87364 0.84478 0.86250 1.21163 1.01814 0.97839 1.15347 1.20930 0.88163 0.88372 0.90012 1.98410 1.30718 1.96077 1.74213 1.67098 1.06505 1.36133 1.24788 1.18487 0.84759 0.85198 0.84855 1.41697 1.24096 1.06626 1.64168 1.67204 1.36484 0.98352 1.34259 0.89856 0.83545 0.84255 0.73334 0.71065 0.83150 0.75147 0.75412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.64 10.81 55.57 0.60 -17.04 16 2 C 0.07 1.53 5.39 -17.29 -0.09 1.43 16 3 Si 0.93 17.53 29.57 -169.99 -5.03 12.51 16 4 H -0.25 -4.91 7.11 56.52 0.40 -4.50 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 7 C -0.37 -9.44 8.51 -37.94 -0.32 -9.77 16 8 H 0.11 3.03 6.04 -52.49 -0.32 2.71 16 9 C 0.15 3.68 5.68 -106.20 -0.60 3.08 16 10 C -0.10 -2.32 9.04 -39.12 -0.35 -2.67 16 11 C -0.20 -4.11 11.07 28.86 0.32 -3.80 16 12 S -0.05 -0.93 22.25 -107.50 -2.39 -3.33 16 13 C -0.43 -10.34 6.51 -35.88 -0.23 -10.57 16 14 C 0.60 14.07 7.88 -13.05 -0.10 13.97 16 15 O -0.56 -14.36 14.29 5.13 0.07 -14.29 16 16 N -0.54 -10.58 6.29 30.16 0.19 -10.39 16 17 N -0.48 -8.08 6.41 31.22 0.20 -7.88 16 18 C 0.49 7.53 7.63 -154.84 -1.18 6.34 16 19 C -0.33 -4.29 9.83 -39.06 -0.38 -4.68 16 20 C 0.30 3.91 7.32 -17.19 -0.13 3.78 16 21 Cl -0.02 -0.25 29.15 -51.86 -1.51 -1.76 16 22 N -0.61 -8.49 10.45 -11.12 -0.12 -8.61 16 23 C 0.63 8.59 8.67 -322.90 -2.80 5.79 16 24 N -0.82 -7.81 9.07 29.75 0.27 -7.54 16 25 N -0.63 -9.63 9.53 -13.18 -0.13 -9.75 16 26 H 0.29 5.91 8.29 -40.82 -0.34 5.57 16 27 H 0.15 3.35 6.40 -52.49 -0.34 3.01 16 28 H 0.14 2.41 8.06 -52.48 -0.42 1.98 16 29 H 0.42 8.06 7.06 -182.59 -1.29 6.77 16 30 H 0.44 6.99 8.01 -182.59 -1.46 5.52 16 31 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.42 3.43 8.94 -40.82 -0.37 3.06 16 33 H 0.41 3.03 8.94 -40.82 -0.37 2.66 16 LS Contribution 326.47 15.07 4.92 4.92 Total: -1.00 -28.43 326.47 -12.92 -41.35 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -4.12 Total: 18.90 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -5.88 Total: 2.90 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 1.02 Total: -61.21 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.07 Total: -14.29 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.39 Total: -3.33 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.43 -12.92 -41.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633919005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.996 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds