Wall clock time and date at job start Tue Mar 31 2020 22:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48502 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47177 * 299.99984 * 3 2 1 6 6 H 1.48500 * 109.47330 * 60.00291 * 3 2 1 7 7 C 1.40302 * 120.00404 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00678 * 170.14147 * 7 2 1 9 9 C 1.40546 * 119.99824 * 350.14542 * 7 2 1 10 10 C 1.44187 * 123.71146 * 336.48092 * 9 7 2 11 11 C 1.32761 * 114.42884 * 180.02562 * 10 9 7 12 12 S 1.75478 * 111.36284 * 0.02562 * 11 10 9 13 13 C 1.39547 * 123.71476 * 156.53368 * 9 7 2 14 14 C 1.46233 * 125.23143 * 359.97438 * 13 9 7 15 15 O 1.21765 * 119.99978 * 359.97438 * 14 13 9 16 16 N 1.34774 * 120.00457 * 179.97438 * 14 13 9 17 17 N 1.40097 * 120.00506 * 179.97438 * 16 14 13 18 18 C 1.38537 * 120.00302 * 180.02562 * 17 16 14 19 19 C 1.39588 * 120.47973 * 179.72613 * 18 17 16 20 20 C 1.38291 * 118.47956 * 179.73143 * 19 18 17 21 21 Cl 1.73596 * 120.37076 * 180.28296 * 20 19 18 22 22 N 1.32627 * 119.25792 * 0.53452 * 20 19 18 23 23 C 1.32462 * 120.90994 * 359.72426 * 22 20 19 24 24 N 1.38393 * 119.17460 * 179.97438 * 23 22 20 25 25 N 1.32466 * 121.66164 * 359.97438 * 23 22 20 26 26 H 0.97005 * 120.00157 * 359.97438 * 1 2 3 27 27 H 1.07999 * 122.78648 * 0.02562 * 10 9 7 28 28 H 1.08004 * 124.32222 * 180.02562 * 11 10 9 29 29 H 0.97007 * 119.99362 * 0.02562 * 16 14 13 30 30 H 0.97008 * 119.99484 * 359.97438 * 17 16 14 31 31 H 1.07998 * 120.75862 * 359.97438 * 19 18 17 32 32 H 0.96996 * 120.00656 * 180.02562 * 24 23 22 33 33 H 0.97008 * 119.99665 * 0.02772 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3464 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8816 2.3965 1.2125 7 6 2.0079 -1.2150 -0.0005 8 1 3.0759 -1.2219 -0.1607 9 6 1.3208 -2.4233 0.2072 10 6 0.0551 -2.5167 0.8915 11 6 -0.4291 -3.7493 0.9846 12 16 0.6430 -4.9159 0.2304 13 6 1.7889 -3.6648 -0.2250 14 6 3.0411 -3.8898 -0.9460 15 8 3.7669 -2.9495 -1.2139 16 7 3.3920 -5.1380 -1.3141 17 7 4.5914 -5.3535 -2.0052 18 6 4.9518 -6.6364 -2.3840 19 6 6.1417 -6.8618 -3.0780 20 6 6.4636 -8.1596 -3.4309 21 17 7.9350 -8.4968 -4.2882 22 7 5.6333 -9.1432 -3.1113 23 6 4.5080 -8.8981 -2.4568 24 7 3.6675 -9.9515 -2.1421 25 7 4.1669 -7.6700 -2.0959 26 1 -0.4850 0.8401 0.0004 27 1 -0.4567 -1.6554 1.2948 28 1 -1.3636 -4.0020 1.4635 29 1 2.8136 -5.8870 -1.1010 30 1 5.1692 -4.6042 -2.2193 31 1 6.7979 -6.0419 -3.3301 32 1 2.8403 -9.7858 -1.6635 33 1 3.9056 -10.8558 -2.4002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633919005.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:27 Heat of formation + Delta-G solvation = 54.586220 kcal Electronic energy + Delta-G solvation = -23092.661057 eV Core-core repulsion = 19306.373810 eV Total energy + Delta-G solvation = -3786.287246 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 339.030 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03523 -40.38155 -38.22643 -37.93215 -37.27214 -35.52249 -34.95276 -34.19971 -32.35310 -30.98316 -30.15249 -27.87513 -25.00555 -24.56900 -23.93062 -22.28600 -20.78228 -20.31213 -19.63101 -18.78334 -18.16392 -17.48925 -17.01327 -16.85404 -16.61767 -16.44066 -16.33811 -15.75190 -15.72769 -15.50522 -15.42250 -14.27200 -14.14299 -14.00521 -13.69916 -13.44142 -13.16542 -13.01485 -12.76251 -12.50678 -12.12613 -12.02543 -12.00221 -11.50123 -11.43757 -11.24732 -11.09194 -10.65379 -10.40957 -9.63130 -9.43432 -8.99151 -8.91642 -8.73909 -6.50137 -0.02804 0.17241 0.32655 0.42474 0.99731 1.33557 1.35230 1.36979 1.51549 1.74755 1.93593 2.09405 2.16944 2.41531 2.77111 2.88035 3.27029 3.67383 3.82474 4.20686 4.32747 4.34866 4.54322 4.90883 4.96770 5.23927 5.34081 5.49107 5.56699 5.75214 5.82638 6.09501 6.28147 6.36347 6.44882 6.56300 6.66839 6.81040 7.36098 7.60095 8.03157 Molecular weight = 339.03amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.002812 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.209162 B = 9954.122644 C =11578.470506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.249 1.249 7 C -0.407 4.407 8 H 0.089 0.911 9 C 0.119 3.881 10 C -0.129 4.129 11 C -0.185 4.185 12 S 0.005 5.995 13 C -0.463 4.463 14 C 0.595 3.405 15 O -0.595 6.595 16 N -0.530 5.530 17 N -0.490 5.490 18 C 0.481 3.519 19 C -0.323 4.323 20 C 0.289 3.711 21 Cl 0.000 7.000 22 N -0.616 5.616 23 C 0.615 3.385 24 N -0.797 5.797 25 N -0.644 5.644 26 H 0.303 0.697 27 H 0.144 0.856 28 H 0.178 0.822 29 H 0.428 0.572 30 H 0.446 0.554 31 H 0.173 0.827 32 H 0.424 0.576 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.197 -11.992 -3.087 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.192 1.192 5 H -0.184 1.184 6 H -0.172 1.172 7 C -0.438 4.438 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.161 4.161 11 C -0.319 4.319 12 S 0.260 5.740 13 C -0.583 4.583 14 C 0.392 3.608 15 O -0.479 6.479 16 N -0.278 5.278 17 N -0.216 5.216 18 C 0.233 3.767 19 C -0.356 4.356 20 C 0.118 3.882 21 Cl 0.029 6.971 22 N -0.348 5.348 23 C 0.254 3.746 24 N -0.348 5.348 25 N -0.381 5.381 26 H 0.114 0.886 27 H 0.161 0.839 28 H 0.196 0.804 29 H 0.270 0.730 30 H 0.292 0.708 31 H 0.190 0.810 32 H 0.257 0.743 33 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 4.793 -13.474 -3.219 14.658 hybrid contribution 0.568 2.427 -0.053 2.493 sum 5.361 -11.047 -3.272 12.708 Atomic orbital electron populations 1.69643 1.08857 1.32153 1.30328 1.27077 0.95794 1.04950 0.90711 0.85015 0.79020 0.75165 0.79799 1.19160 1.18443 1.17250 1.20145 0.97125 0.90588 1.35907 0.89280 1.18326 0.90825 0.92051 0.88076 1.21615 0.96301 0.97261 1.00951 1.25471 1.04097 0.96046 1.06319 1.82502 1.16170 1.11493 1.63843 1.22553 1.05706 0.97524 1.32517 1.17064 0.85117 0.80270 0.78312 1.90641 1.54774 1.42224 1.60307 1.44753 1.14795 1.09757 1.58512 1.43148 1.15601 1.05722 1.57141 1.17963 0.88177 0.83893 0.86701 1.21341 1.01204 0.98660 1.14424 1.21194 0.88774 0.88357 0.89869 1.98419 1.29183 1.95958 1.73559 1.67212 1.06600 1.36312 1.24691 1.18821 0.85312 0.85467 0.84982 1.41706 1.23594 1.06360 1.63096 1.67182 1.37063 0.99020 1.34866 0.88557 0.83852 0.80437 0.72975 0.70828 0.80962 0.74256 0.73978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.29 10.81 21.89 0.24 -36.05 16 2 C 0.04 1.68 5.39 85.37 0.46 2.14 16 3 Si 0.99 36.37 29.57 68.60 2.03 38.40 16 4 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 6 H -0.25 -8.28 7.11 99.48 0.71 -7.58 16 7 C -0.41 -21.73 8.51 23.34 0.20 -21.54 16 8 H 0.09 5.07 6.04 -2.91 -0.02 5.05 16 9 C 0.12 6.20 5.68 -20.89 -0.12 6.09 16 10 C -0.13 -5.99 9.04 22.61 0.20 -5.78 16 11 C -0.19 -7.36 11.07 66.64 0.74 -6.62 16 12 S 0.00 0.19 22.25 -56.49 -1.26 -1.07 16 13 C -0.46 -22.85 6.51 24.66 0.16 -22.69 16 14 C 0.59 28.71 7.88 86.32 0.68 29.39 16 15 O -0.59 -31.65 14.29 -4.56 -0.07 -31.72 16 16 N -0.53 -21.05 6.29 -176.67 -1.11 -22.16 16 17 N -0.49 -16.52 6.41 -55.14 -0.35 -16.87 16 18 C 0.48 14.43 7.63 133.17 1.02 15.44 16 19 C -0.32 -8.05 9.83 22.61 0.22 -7.83 16 20 C 0.29 7.15 7.32 84.59 0.62 7.77 16 21 Cl 0.00 0.00 29.15 -2.72 -0.08 -0.08 16 22 N -0.62 -16.01 10.45 -189.09 -1.98 -17.99 16 23 C 0.62 15.91 8.67 261.52 2.27 18.18 16 24 N -0.80 -13.74 9.07 -59.79 -0.54 -14.28 16 25 N -0.64 -19.21 9.53 -195.61 -1.86 -21.08 16 26 H 0.30 12.20 8.29 -92.70 -0.77 11.44 16 27 H 0.14 6.63 6.40 -2.91 -0.02 6.61 16 28 H 0.18 5.56 8.06 -2.91 -0.02 5.53 16 29 H 0.43 16.20 7.06 -213.31 -1.51 14.69 16 30 H 0.45 14.35 8.01 -213.31 -1.71 12.64 16 31 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.42 6.17 8.94 -92.71 -0.83 5.34 16 33 H 0.43 5.30 8.94 -92.70 -0.83 4.47 16 Total: -1.00 -62.70 326.47 -2.14 -64.84 By element: Atomic # 1 Polarization: 47.10 SS G_CDS: -3.61 Total: 43.50 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.45 Total: 14.56 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -5.61 Total: -128.43 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.07 Total: -31.72 kcal Atomic # 14 Polarization: 36.37 SS G_CDS: 2.03 Total: 38.40 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -1.26 Total: -1.07 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -62.70 -2.14 -64.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633919005.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.429 kcal (2) G-P(sol) polarization free energy of solvation -62.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds