Wall clock time and date at job start Tue Mar 31 2020 22:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86802 * 119.99554 * 2 1 4 4 H 1.48494 * 109.47355 * 270.00263 * 3 2 1 5 5 H 1.48498 * 109.46984 * 30.00714 * 3 2 1 6 6 H 1.48506 * 109.46654 * 149.99995 * 3 2 1 7 7 C 1.38649 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99438 * 359.97438 * 7 2 1 9 9 O 1.34822 * 120.00181 * 179.97438 * 7 2 1 10 10 C 1.35754 * 117.00185 * 185.05668 * 9 7 2 11 11 C 1.38936 * 120.04068 * 174.48426 * 10 9 7 12 12 C 1.38108 * 120.03805 * 179.97438 * 11 10 9 13 13 C 1.38236 * 120.12709 * 359.78551 * 12 11 10 14 14 C 1.38787 * 120.07724 * 0.46847 * 13 12 11 15 15 O 1.35894 * 120.02060 * 179.78857 * 14 13 12 16 16 S 1.52197 * 114.00268 * 269.72825 * 15 14 13 17 17 O 1.42104 * 106.39823 * 321.45881 * 16 15 14 18 18 O 1.42099 * 106.40404 * 188.54002 * 16 15 14 19 19 C 1.76199 * 107.22361 * 74.99689 * 16 15 14 20 20 C 1.38232 * 120.40842 * 89.99728 * 19 16 15 21 21 N 1.31838 * 120.82143 * 179.72335 * 20 19 16 22 22 C 1.31868 * 121.75544 * 0.26037 * 21 20 19 23 23 C 1.38420 * 120.72476 * 0.02562 * 22 21 20 24 24 F 1.35096 * 120.44734 * 180.02562 * 23 22 21 25 25 C 1.38593 * 120.40593 * 270.23557 * 19 16 15 26 26 C 1.38612 * 119.95579 * 359.51229 * 14 13 12 27 27 H 0.96993 * 120.00020 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.97969 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.93849 * 180.02562 * 12 11 10 30 30 H 1.07995 * 119.96191 * 180.25932 * 13 12 11 31 31 H 1.08001 * 119.58411 * 0.02562 * 20 19 16 32 32 H 1.07996 * 119.63900 * 180.02562 * 22 21 20 33 33 H 1.08002 * 120.79959 * 0.02962 * 25 19 16 34 34 H 1.07999 * 120.05866 * 180.22937 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4402 0.7001 7 6 2.0090 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0005 9 8 3.3572 -1.2006 -0.0011 10 6 3.9735 -2.4054 -0.1082 11 6 5.3559 -2.4711 -0.2306 12 6 5.9830 -3.6968 -0.3390 13 6 5.2381 -4.8612 -0.3217 14 6 3.8564 -4.8013 -0.2049 15 8 3.1249 -5.9465 -0.1922 16 16 2.6716 -6.4068 -1.5703 17 8 2.3269 -5.2324 -2.2923 18 8 1.7668 -7.4815 -1.3569 19 6 4.0779 -7.0936 -2.3797 20 6 4.3693 -8.4391 -2.2548 21 7 5.4163 -8.9626 -2.8612 22 6 6.2265 -8.2320 -3.6020 23 6 6.0023 -6.8763 -3.7689 24 9 6.8356 -6.1332 -4.5295 25 6 4.9084 -6.2905 -3.1453 26 6 3.2237 -3.5729 -0.0954 27 1 -0.4850 0.8400 0.0004 28 1 5.9405 -1.5630 -0.2410 29 1 7.0577 -3.7460 -0.4337 30 1 5.7315 -5.8184 -0.4024 31 1 3.7284 -9.0702 -1.6569 32 1 7.0741 -8.6964 -4.0838 33 1 4.7077 -5.2352 -3.2571 34 1 2.1489 -3.5245 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662465275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:19 Heat of formation + Delta-G solvation = -98.376785 kcal Electronic energy + Delta-G solvation = -26911.593448 eV Core-core repulsion = 22625.751350 eV Total energy + Delta-G solvation = -4285.842097 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.045 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.36006 -40.88643 -40.45239 -38.93222 -37.36936 -36.40399 -36.02550 -33.19717 -32.57699 -31.50120 -30.17402 -29.46871 -25.57991 -24.88919 -24.14922 -23.34811 -21.96760 -20.46697 -19.29029 -18.44069 -18.10696 -17.85593 -17.57876 -17.35298 -16.64331 -16.29501 -16.21358 -15.60755 -15.38534 -14.70692 -14.34612 -14.20903 -14.12655 -13.97789 -13.70209 -13.58553 -13.42073 -13.03520 -12.82238 -12.43921 -12.33769 -12.19790 -12.10164 -11.89232 -11.56724 -11.43926 -11.07137 -10.94470 -10.72867 -10.41972 -10.09280 -9.72693 -9.61425 -9.07247 -8.64994 -7.80990 -6.58627 -4.26990 -0.12515 0.18653 0.51193 1.53228 1.76562 2.35423 2.95577 3.11876 3.16301 3.28193 3.42217 3.53083 3.82523 3.95081 4.08669 4.10319 4.28277 4.38521 4.47955 4.51176 4.86489 4.92473 5.11033 5.20927 5.24200 5.33045 5.40219 5.60348 5.73917 6.00529 6.05683 6.34975 6.53207 6.65481 6.77499 7.14071 7.16095 7.55184 7.80047 8.73206 9.26726 10.47672 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003806 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.931323 B = 7354.828194 C = 8159.015501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.397 4.397 8 H 0.111 0.889 9 O -0.198 6.198 10 C 0.170 3.830 11 C -0.171 4.171 12 C -0.061 4.061 13 C -0.216 4.216 14 C 0.098 3.902 15 O -0.653 6.653 16 S 2.681 3.319 17 O -0.931 6.931 18 O -0.928 6.928 19 C -0.726 4.726 20 C 0.193 3.807 21 N -0.470 5.470 22 C 0.127 3.873 23 C 0.029 3.971 24 F -0.122 7.122 25 C 0.006 3.994 26 C -0.192 4.192 27 H 0.284 0.716 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.120 0.880 31 H 0.183 0.817 32 H 0.177 0.823 33 H 0.170 0.830 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.777 -12.568 -4.835 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.472 4.472 8 H 0.128 0.872 9 O -0.101 6.101 10 C 0.116 3.884 11 C -0.191 4.191 12 C -0.080 4.080 13 C -0.237 4.237 14 C 0.057 3.943 15 O -0.613 6.613 16 S 2.769 3.231 17 O -0.929 6.929 18 O -0.926 6.926 19 C -0.809 4.809 20 C 0.034 3.966 21 N -0.178 5.178 22 C -0.031 4.031 23 C 0.007 3.993 24 F -0.100 7.100 25 C -0.021 4.021 26 C -0.214 4.214 27 H 0.094 0.906 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.200 0.800 32 H 0.194 0.806 33 H 0.187 0.813 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.145 -13.012 -4.498 18.359 hybrid contribution 0.624 1.179 -0.569 1.450 sum 12.768 -11.833 -5.067 18.131 Atomic orbital electron populations 1.69643 1.05679 1.29005 1.45664 1.24514 0.95073 0.99051 0.95090 0.86158 0.80326 0.81092 0.79218 1.19569 1.20505 1.18177 1.20848 0.76379 0.97074 1.52870 0.87200 1.83598 1.23135 1.24890 1.78462 1.18780 0.91471 0.84935 0.93257 1.20452 0.91834 0.98529 1.08279 1.20488 0.99056 0.90620 0.97818 1.20680 0.91062 0.99418 1.12578 1.17815 0.88953 0.80413 1.07135 1.85679 1.73148 1.46968 1.55457 1.02729 0.73349 0.74174 0.72800 1.93715 1.81013 1.45909 1.72268 1.93621 1.58898 1.56030 1.84094 1.32398 1.24969 1.05916 1.17639 1.22732 0.91655 0.90553 0.91626 1.67917 1.04168 1.37995 1.07748 1.23320 0.97753 0.88908 0.93083 1.18724 0.92168 0.91332 0.97070 1.91575 1.69430 1.76189 1.72823 1.21534 0.89641 1.01770 0.89159 1.21321 1.02587 0.90066 1.07397 0.90602 0.85166 0.85179 0.86171 0.80003 0.80648 0.81266 0.83152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.02 13.96 55.48 0.77 -23.25 16 2 C 0.07 1.83 5.49 -17.51 -0.10 1.73 16 3 Si 0.91 20.36 28.62 -169.99 -4.86 15.50 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.40 -10.65 9.94 30.88 0.31 -10.34 16 8 H 0.11 3.05 5.44 -52.48 -0.29 2.76 16 9 O -0.20 -4.80 8.58 0.06 0.00 -4.80 16 10 C 0.17 3.56 6.65 -39.13 -0.26 3.30 16 11 C -0.17 -2.85 9.99 -39.37 -0.39 -3.24 16 12 C -0.06 -0.85 10.03 -39.63 -0.40 -1.25 16 13 C -0.22 -3.14 8.41 -39.38 -0.33 -3.47 16 14 C 0.10 1.71 4.79 -39.24 -0.19 1.52 16 15 O -0.65 -10.58 10.16 -51.54 -0.52 -11.10 16 16 S 2.68 41.16 5.43 -107.50 -0.58 40.58 16 17 O -0.93 -17.06 15.68 -66.81 -1.05 -18.11 16 18 O -0.93 -15.32 17.30 -66.81 -1.16 -16.47 16 19 C -0.73 -8.93 5.31 -39.45 -0.21 -9.14 16 20 C 0.19 2.13 10.68 -17.55 -0.19 1.94 16 21 N -0.47 -5.00 10.36 -13.20 -0.14 -5.14 16 22 C 0.13 1.15 11.17 -17.47 -0.20 0.96 16 23 C 0.03 0.30 7.35 -39.28 -0.29 0.01 16 24 F -0.12 -1.26 17.28 2.25 0.04 -1.22 16 25 C 0.01 0.07 8.58 -39.21 -0.34 -0.27 16 26 C -0.19 -3.96 8.31 -39.25 -0.33 -4.29 16 27 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 29 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.12 1.43 7.97 -52.49 -0.42 1.01 16 31 H 0.18 1.65 7.63 -52.49 -0.40 1.25 16 32 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.17 1.99 7.71 -52.49 -0.40 1.59 16 34 H 0.15 3.35 5.64 -52.49 -0.30 3.06 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -30.95 322.28 -7.75 -38.70 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -2.21 Total: 2.98 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.90 Total: -22.53 kcal Atomic # 7 Polarization: -29.02 SS G_CDS: 0.64 Total: -28.39 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -2.73 Total: -50.49 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.86 Total: 15.50 kcal Atomic # 16 Polarization: 41.16 SS G_CDS: -0.58 Total: 40.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.95 -7.75 -38.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662465275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.672 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds