Wall clock time and date at job start Tue Mar 31 2020 22:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86802 * 119.99554 * 2 1 4 4 H 1.48494 * 109.47355 * 270.00263 * 3 2 1 5 5 H 1.48498 * 109.46984 * 30.00714 * 3 2 1 6 6 H 1.48506 * 109.46654 * 149.99995 * 3 2 1 7 7 C 1.38649 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99438 * 359.97438 * 7 2 1 9 9 O 1.34822 * 120.00181 * 179.97438 * 7 2 1 10 10 C 1.35754 * 117.00185 * 185.05668 * 9 7 2 11 11 C 1.38936 * 120.04068 * 174.48426 * 10 9 7 12 12 C 1.38108 * 120.03805 * 179.97438 * 11 10 9 13 13 C 1.38236 * 120.12709 * 359.78551 * 12 11 10 14 14 C 1.38787 * 120.07724 * 0.46847 * 13 12 11 15 15 O 1.35894 * 120.02060 * 179.78857 * 14 13 12 16 16 S 1.52197 * 114.00268 * 269.72825 * 15 14 13 17 17 O 1.42104 * 106.39823 * 321.45881 * 16 15 14 18 18 O 1.42099 * 106.40404 * 188.54002 * 16 15 14 19 19 C 1.76199 * 107.22361 * 74.99689 * 16 15 14 20 20 C 1.38232 * 120.40842 * 89.99728 * 19 16 15 21 21 N 1.31838 * 120.82143 * 179.72335 * 20 19 16 22 22 C 1.31868 * 121.75544 * 0.26037 * 21 20 19 23 23 C 1.38420 * 120.72476 * 0.02562 * 22 21 20 24 24 F 1.35096 * 120.44734 * 180.02562 * 23 22 21 25 25 C 1.38593 * 120.40593 * 270.23557 * 19 16 15 26 26 C 1.38612 * 119.95579 * 359.51229 * 14 13 12 27 27 H 0.96993 * 120.00020 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.97969 * 359.97438 * 11 10 9 29 29 H 1.08004 * 119.93849 * 180.02562 * 12 11 10 30 30 H 1.07995 * 119.96191 * 180.25932 * 13 12 11 31 31 H 1.08001 * 119.58411 * 0.02562 * 20 19 16 32 32 H 1.07996 * 119.63900 * 180.02562 * 22 21 20 33 33 H 1.08002 * 120.79959 * 0.02962 * 25 19 16 34 34 H 1.07999 * 120.05866 * 180.22937 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0466 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4402 0.7001 7 6 2.0090 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0005 9 8 3.3572 -1.2006 -0.0011 10 6 3.9735 -2.4054 -0.1082 11 6 5.3559 -2.4711 -0.2306 12 6 5.9830 -3.6968 -0.3390 13 6 5.2381 -4.8612 -0.3217 14 6 3.8564 -4.8013 -0.2049 15 8 3.1249 -5.9465 -0.1922 16 16 2.6716 -6.4068 -1.5703 17 8 2.3269 -5.2324 -2.2923 18 8 1.7668 -7.4815 -1.3569 19 6 4.0779 -7.0936 -2.3797 20 6 4.3693 -8.4391 -2.2548 21 7 5.4163 -8.9626 -2.8612 22 6 6.2265 -8.2320 -3.6020 23 6 6.0023 -6.8763 -3.7689 24 9 6.8356 -6.1332 -4.5295 25 6 4.9084 -6.2905 -3.1453 26 6 3.2237 -3.5729 -0.0954 27 1 -0.4850 0.8400 0.0004 28 1 5.9405 -1.5630 -0.2410 29 1 7.0577 -3.7460 -0.4337 30 1 5.7315 -5.8184 -0.4024 31 1 3.7284 -9.0702 -1.6569 32 1 7.0741 -8.6964 -4.0838 33 1 4.7077 -5.2352 -3.2571 34 1 2.1489 -3.5245 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662465275.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:18 Heat of formation + Delta-G solvation = -120.481453 kcal Electronic energy + Delta-G solvation = -26912.551978 eV Core-core repulsion = 22625.751350 eV Total energy + Delta-G solvation = -4286.800628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 339.045 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.15549 -42.25954 -41.31026 -40.50196 -38.70845 -37.88965 -37.37178 -34.51371 -34.08799 -32.34081 -31.59778 -30.95271 -27.42759 -25.78569 -25.01939 -24.73750 -23.44468 -21.82850 -20.48077 -20.09299 -19.46671 -19.02297 -18.66245 -18.23777 -17.75264 -17.67226 -17.14315 -16.96343 -16.76989 -16.06494 -15.86731 -15.80119 -15.17167 -15.00743 -14.95179 -14.85571 -14.58289 -14.24782 -14.22606 -13.91456 -13.78984 -13.55527 -13.46251 -13.09830 -12.98071 -12.87541 -12.56864 -12.47229 -12.09471 -11.66853 -11.60785 -10.98285 -10.94653 -10.43408 -10.01970 -9.38109 -8.53791 -6.30344 -1.23844 -0.84056 -0.35273 0.13756 0.36856 1.11109 1.33557 1.38176 1.53803 2.07827 2.26478 2.32481 2.49380 2.57333 2.87912 2.93677 3.00965 3.14411 3.40393 3.49337 3.65146 3.74287 3.88810 3.97336 4.13006 4.18271 4.34687 4.45168 4.52246 4.74271 5.00138 5.09629 5.20309 5.24124 5.30495 5.60828 5.72560 5.99498 6.32670 6.77773 7.42176 8.57676 Molecular weight = 339.05amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003806 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.931323 B = 7354.828194 C = 8159.015501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.409 4.409 8 H 0.075 0.925 9 O -0.225 6.225 10 C 0.137 3.863 11 C -0.156 4.156 12 C -0.043 4.043 13 C -0.181 4.181 14 C 0.087 3.913 15 O -0.657 6.657 16 S 2.689 3.311 17 O -0.971 6.971 18 O -0.947 6.947 19 C -0.725 4.725 20 C 0.197 3.803 21 N -0.475 5.475 22 C 0.148 3.852 23 C 0.034 3.966 24 F -0.119 7.119 25 C -0.006 4.006 26 C -0.223 4.223 27 H 0.287 0.713 28 H 0.157 0.843 29 H 0.191 0.809 30 H 0.162 0.838 31 H 0.197 0.803 32 H 0.217 0.783 33 H 0.163 0.837 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.051 -14.329 -5.699 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.485 4.485 8 H 0.093 0.907 9 O -0.131 6.131 10 C 0.087 3.913 11 C -0.176 4.176 12 C -0.061 4.061 13 C -0.202 4.202 14 C 0.046 3.954 15 O -0.616 6.616 16 S 2.782 3.218 17 O -0.970 6.970 18 O -0.945 6.945 19 C -0.813 4.813 20 C 0.039 3.961 21 N -0.184 5.184 22 C -0.010 4.010 23 C 0.012 3.988 24 F -0.098 7.098 25 C -0.033 4.033 26 C -0.245 4.245 27 H 0.097 0.903 28 H 0.175 0.825 29 H 0.208 0.792 30 H 0.180 0.820 31 H 0.214 0.786 32 H 0.233 0.767 33 H 0.181 0.819 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 17.409 -14.802 -5.334 23.465 hybrid contribution -0.679 1.248 -0.414 1.480 sum 16.730 -13.553 -5.748 22.285 Atomic orbital electron populations 1.69746 1.07301 1.29995 1.48855 1.25407 0.95910 1.02612 0.94862 0.85137 0.79049 0.76536 0.79509 1.18864 1.19354 1.17546 1.20681 0.77975 0.96184 1.53669 0.90711 1.83538 1.21196 1.26405 1.81990 1.19434 0.93361 0.84097 0.94413 1.20965 0.89726 1.01197 1.05723 1.21194 1.01702 0.88596 0.94602 1.21315 0.89351 1.01904 1.07598 1.17987 0.90301 0.79617 1.07518 1.85647 1.73546 1.46370 1.56080 1.02070 0.74084 0.73325 0.72293 1.93675 1.82454 1.47896 1.72941 1.93587 1.60571 1.56051 1.84307 1.31686 1.24074 1.06582 1.19001 1.23013 0.91873 0.89905 0.91318 1.68068 1.04182 1.37928 1.08187 1.23972 0.97701 0.88188 0.91145 1.18683 0.91571 0.91756 0.96795 1.91591 1.69195 1.76280 1.72713 1.21558 0.90374 1.01674 0.89715 1.21267 1.01251 0.92190 1.09814 0.90307 0.82516 0.79231 0.82006 0.78632 0.76657 0.81929 0.86943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.95 13.96 21.61 0.30 -54.65 16 2 C 0.01 0.65 5.49 84.83 0.47 1.12 16 3 Si 0.98 43.59 28.62 68.60 1.96 45.55 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 6 H -0.25 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.41 -23.84 9.94 67.92 0.68 -23.17 16 8 H 0.08 4.71 5.44 -2.91 -0.02 4.69 16 9 O -0.22 -11.48 8.58 -22.70 -0.19 -11.67 16 10 C 0.14 5.91 6.65 22.56 0.15 6.06 16 11 C -0.16 -4.77 9.99 22.41 0.22 -4.54 16 12 C -0.04 -0.96 10.03 22.24 0.22 -0.74 16 13 C -0.18 -4.51 8.41 22.40 0.19 -4.33 16 14 C 0.09 3.01 4.79 22.49 0.11 3.12 16 15 O -0.66 -21.62 10.16 -61.64 -0.63 -22.24 16 16 S 2.69 84.41 5.43 -56.49 -0.31 84.10 16 17 O -0.97 -37.95 15.68 -118.78 -1.86 -39.81 16 18 O -0.95 -32.07 17.30 -118.78 -2.05 -34.13 16 19 C -0.73 -16.38 5.31 22.35 0.12 -16.26 16 20 C 0.20 3.75 10.68 84.69 0.90 4.65 16 21 N -0.48 -8.05 10.36 -195.68 -2.03 -10.08 16 22 C 0.15 1.91 11.17 84.73 0.95 2.86 16 23 C 0.03 0.56 7.35 22.47 0.17 0.72 16 24 F -0.12 -1.96 17.28 44.97 0.78 -1.18 16 25 C -0.01 -0.13 8.58 22.51 0.19 0.07 16 26 C -0.22 -9.81 8.31 22.48 0.19 -9.63 16 27 H 0.29 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 29 H 0.19 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.16 2.82 7.97 -2.91 -0.02 2.79 16 31 H 0.20 3.07 7.63 -2.91 -0.02 3.05 16 32 H 0.22 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.16 3.58 7.71 -2.91 -0.02 3.56 16 34 H 0.11 5.73 5.64 -2.91 -0.02 5.72 16 Total: -1.00 -75.37 322.28 1.70 -73.67 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.18 Total: 10.52 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.55 Total: -40.07 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -1.72 Total: -64.73 kcal Atomic # 8 Polarization: -103.12 SS G_CDS: -4.74 Total: -107.86 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.96 Total: 45.55 kcal Atomic # 16 Polarization: 84.41 SS G_CDS: -0.31 Total: 84.10 kcal Total: -75.37 1.70 -73.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662465275.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.813 kcal (2) G-P(sol) polarization free energy of solvation -75.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds