Wall clock time and date at job start Tue Mar 31 2020 22:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00354 * 2 1 4 4 H 1.48500 * 109.47355 * 240.00170 * 3 2 1 5 5 H 1.48502 * 109.46909 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47211 * 120.00132 * 3 2 1 7 7 C 1.38660 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99840 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00248 * 185.05608 * 9 7 2 11 11 C 1.38874 * 120.06679 * 354.46257 * 10 9 7 12 12 C 1.38100 * 119.93092 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06766 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.92909 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.47017 * 90.00335 * 14 13 12 16 16 C 1.34770 * 119.99701 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00554 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00170 * 180.27273 * 16 15 14 19 19 H 1.09004 * 109.38187 * 334.51798 * 18 16 15 20 20 C 1.52627 * 109.39015 * 214.72687 * 18 16 15 21 21 S 1.81167 * 109.99635 * 172.98932 * 20 18 16 22 22 C 1.81181 * 103.31331 * 62.61641 * 21 20 18 23 23 C 1.52639 * 109.98751 * 297.38643 * 22 21 20 24 24 S 1.81172 * 109.99360 * 66.85323 * 23 22 21 25 25 C 1.38300 * 120.14056 * 0.30138 * 13 12 11 26 26 C 1.38111 * 120.06366 * 359.44554 * 25 13 12 27 27 H 0.97001 * 120.00001 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.03581 * 0.02562 * 11 10 9 29 29 H 1.08002 * 119.96619 * 180.02562 * 12 11 10 30 30 H 1.08998 * 109.47227 * 330.00160 * 14 13 12 31 31 H 1.09003 * 109.46952 * 210.00610 * 14 13 12 32 32 H 0.96995 * 120.00006 * 0.02562 * 15 14 13 33 33 H 1.09005 * 109.38514 * 293.15650 * 20 18 16 34 34 H 1.09003 * 109.38181 * 52.93698 * 20 18 16 35 35 H 1.08991 * 109.38135 * 57.54700 * 22 21 20 36 36 H 1.08995 * 109.38334 * 177.33765 * 22 21 20 37 37 H 1.09000 * 109.37935 * 187.00736 * 23 22 21 38 38 H 1.08991 * 109.38590 * 306.79118 * 23 22 21 39 39 H 1.08000 * 119.96806 * 179.70271 * 25 13 12 40 40 H 1.07998 * 120.03292 * 180.27477 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0016 10 6 2.0698 -3.5047 0.1045 11 6 3.4569 -3.4396 0.0921 12 6 4.2021 -4.5974 0.1997 13 6 3.5682 -5.8207 0.3203 14 6 4.3844 -7.0821 0.4381 15 7 4.6550 -7.3585 1.8511 16 6 5.3732 -8.4442 2.1998 17 8 5.7961 -9.1922 1.3438 18 6 5.6464 -8.7320 3.6537 19 1 5.6096 -7.8012 4.2198 20 6 7.0318 -9.3565 3.7951 21 16 7.4620 -9.5195 5.5473 22 6 6.2024 -10.6565 6.1822 23 6 4.8168 -10.0319 6.0408 24 16 4.3867 -9.8690 4.2885 25 6 2.1870 -5.8894 0.3273 26 6 1.4362 -4.7346 0.2253 27 1 -0.4850 0.8401 0.0004 28 1 3.9525 -2.4846 -0.0016 29 1 5.2809 -4.5474 0.1905 30 1 5.3271 -6.9559 -0.0944 31 1 3.8308 -7.9149 0.0044 32 1 4.3165 -6.7605 2.5357 33 1 7.0338 -10.3418 3.3288 34 1 7.7671 -8.7211 3.3012 35 1 6.2386 -11.5881 5.6177 36 1 6.3987 -10.8631 7.2342 37 1 4.0818 -10.6663 6.5363 38 1 4.8154 -9.0459 6.5054 39 1 1.6949 -6.8466 0.4168 40 1 0.3577 -4.7885 0.2352 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177095772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:48 Heat of formation + Delta-G solvation = -41.017912 kcal Electronic energy + Delta-G solvation = -23340.109660 eV Core-core repulsion = 19758.801101 eV Total energy + Delta-G solvation = -3581.308559 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00390 -39.09758 -36.95351 -34.58805 -34.28911 -32.93507 -32.39205 -30.33643 -29.99927 -26.41910 -25.37595 -24.41486 -23.96756 -22.09820 -20.74989 -20.69230 -18.45193 -18.09997 -17.20364 -17.12538 -16.53417 -16.11736 -15.73125 -15.11313 -14.74575 -14.67006 -14.62491 -14.40598 -14.05649 -13.81017 -13.76410 -13.61848 -13.46501 -13.35962 -12.82617 -12.71565 -12.33511 -12.11632 -11.72450 -11.66426 -11.43799 -11.00826 -10.85017 -10.76194 -10.74433 -10.53060 -10.31420 -9.98664 -9.47114 -9.13169 -8.94038 -8.45243 -8.32781 -8.15937 -7.37316 -6.55959 -4.14969 0.75637 1.08679 1.74781 1.93696 2.04518 2.09161 2.67592 3.05778 3.07104 3.10919 3.19575 3.87831 3.95135 4.07601 4.36091 4.43277 4.46850 4.59653 4.71484 4.92962 4.98428 5.00876 5.11446 5.17387 5.18604 5.30914 5.35137 5.60842 5.74511 5.82601 6.08265 6.30241 6.32411 6.55683 6.76037 6.91139 7.09334 7.22198 7.31280 7.38244 7.67352 7.88420 7.99226 8.89096 9.56808 10.61337 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.002056 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.053792 B =13615.414783 C =13926.426272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.218 4.218 14 C 0.179 3.821 15 N -0.708 5.708 16 C 0.535 3.465 17 O -0.529 6.529 18 C -0.088 4.088 19 H 0.118 0.882 20 C -0.071 4.071 21 S -0.244 6.244 22 C -0.092 4.092 23 C -0.097 4.097 24 S -0.199 6.199 25 C -0.052 4.052 26 C -0.195 4.195 27 H 0.272 0.728 28 H 0.128 0.872 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.405 0.595 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.263 -17.572 11.467 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.074 6.074 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.219 4.219 14 C 0.058 3.942 15 N -0.360 5.360 16 C 0.316 3.684 17 O -0.406 6.406 18 C -0.222 4.222 19 H 0.136 0.864 20 C -0.221 4.221 21 S -0.015 6.015 22 C -0.242 4.242 23 C -0.247 4.247 24 S 0.028 5.972 25 C -0.071 4.071 26 C -0.214 4.214 27 H 0.082 0.918 28 H 0.146 0.854 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.240 0.760 33 H 0.127 0.873 34 H 0.138 0.862 35 H 0.117 0.883 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.119 0.881 39 H 0.131 0.869 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.124 -17.877 10.831 23.678 hybrid contribution 0.287 1.240 0.391 1.332 sum 11.411 -16.637 11.223 23.086 Atomic orbital electron populations 1.70023 1.06019 1.28042 1.45160 1.25325 0.95867 0.98954 0.96289 0.85761 0.78735 0.79578 0.79275 1.19401 1.20182 1.19415 1.21312 0.91846 0.80717 1.53168 0.88953 1.83977 1.34521 1.11562 1.77353 1.19444 0.90326 0.88058 0.91556 1.21152 0.93775 0.98945 1.11785 1.20635 0.98352 0.91617 0.96260 1.19160 0.93567 0.93453 1.15740 1.20050 0.98704 0.95194 0.80298 1.46331 1.53396 1.26162 1.10070 1.19439 0.78972 0.81624 0.88395 1.90727 1.51284 1.47676 1.50925 1.23498 0.97381 1.02476 0.98810 0.86353 1.23407 0.97161 1.06390 0.95175 1.86919 1.43198 1.62055 1.09326 1.23581 0.94396 1.00497 1.05773 1.23667 0.99472 1.05810 0.95766 1.87227 1.40478 1.60984 1.08506 1.20540 0.92730 0.96882 0.96962 1.20221 0.99717 0.90218 1.11282 0.91777 0.85397 0.87403 0.91303 0.91255 0.76026 0.87276 0.86233 0.88251 0.86343 0.86011 0.88136 0.86900 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.41 13.67 55.48 0.76 -23.65 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 19.79 29.55 -169.99 -5.02 14.76 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.59 9.49 30.89 0.29 -10.29 16 8 H 0.09 2.27 5.20 -52.48 -0.27 2.00 16 9 O -0.17 -4.70 9.76 0.06 0.00 -4.70 16 10 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.24 -4.80 9.17 -39.40 -0.36 -5.16 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 13 C -0.22 -3.36 5.25 -104.57 -0.55 -3.91 16 14 C 0.18 2.39 5.80 -5.19 -0.03 2.36 16 15 N -0.71 -8.37 5.55 -61.47 -0.34 -8.71 16 16 C 0.53 6.54 6.82 -10.99 -0.07 6.47 16 17 O -0.53 -8.18 16.39 5.55 0.09 -8.09 16 18 C -0.09 -0.83 2.74 -28.07 -0.08 -0.91 16 19 H 0.12 0.97 8.11 -51.91 -0.42 0.55 16 20 C -0.07 -0.64 5.08 36.97 0.19 -0.45 16 21 S -0.24 -1.98 22.05 -107.50 -2.37 -4.35 16 22 C -0.09 -0.53 6.25 36.97 0.23 -0.30 16 23 C -0.10 -0.58 6.25 36.97 0.23 -0.35 16 24 S -0.20 -1.87 21.39 -107.50 -2.30 -4.17 16 25 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 26 C -0.20 -3.86 9.99 -39.39 -0.39 -4.25 16 27 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.13 2.60 5.64 -52.49 -0.30 2.31 16 29 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.40 4.30 8.44 -40.82 -0.34 3.95 16 33 H 0.11 1.07 8.06 -51.91 -0.42 0.66 16 34 H 0.12 1.05 8.13 -51.91 -0.42 0.63 16 35 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.12 0.48 8.14 -51.92 -0.42 0.05 16 37 H 0.12 0.53 8.14 -51.92 -0.42 0.11 16 38 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -30.75 362.85 -10.49 -41.24 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.11 Total: 7.06 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.67 Total: -14.86 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.42 Total: -32.37 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -4.67 Total: -8.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.75 -10.49 -41.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177095772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.223 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds