Wall clock time and date at job start Tue Mar 31 2020 22:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86798 * 120.00354 * 2 1 4 4 H 1.48500 * 109.47355 * 240.00170 * 3 2 1 5 5 H 1.48502 * 109.46909 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47211 * 120.00132 * 3 2 1 7 7 C 1.38660 * 119.99687 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99840 * 179.97438 * 7 2 1 9 9 O 1.34825 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00248 * 185.05608 * 9 7 2 11 11 C 1.38874 * 120.06679 * 354.46257 * 10 9 7 12 12 C 1.38100 * 119.93092 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.06766 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.92909 * 180.02562 * 13 12 11 15 15 N 1.46501 * 109.47017 * 90.00335 * 14 13 12 16 16 C 1.34770 * 119.99701 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00554 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00170 * 180.27273 * 16 15 14 19 19 H 1.09004 * 109.38187 * 334.51798 * 18 16 15 20 20 C 1.52627 * 109.39015 * 214.72687 * 18 16 15 21 21 S 1.81167 * 109.99635 * 172.98932 * 20 18 16 22 22 C 1.81181 * 103.31331 * 62.61641 * 21 20 18 23 23 C 1.52639 * 109.98751 * 297.38643 * 22 21 20 24 24 S 1.81172 * 109.99360 * 66.85323 * 23 22 21 25 25 C 1.38300 * 120.14056 * 0.30138 * 13 12 11 26 26 C 1.38111 * 120.06366 * 359.44554 * 25 13 12 27 27 H 0.97001 * 120.00001 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.03581 * 0.02562 * 11 10 9 29 29 H 1.08002 * 119.96619 * 180.02562 * 12 11 10 30 30 H 1.08998 * 109.47227 * 330.00160 * 14 13 12 31 31 H 1.09003 * 109.46952 * 210.00610 * 14 13 12 32 32 H 0.96995 * 120.00006 * 0.02562 * 15 14 13 33 33 H 1.09005 * 109.38514 * 293.15650 * 20 18 16 34 34 H 1.09003 * 109.38181 * 52.93698 * 20 18 16 35 35 H 1.08991 * 109.38135 * 57.54700 * 22 21 20 36 36 H 1.08995 * 109.38334 * 177.33765 * 22 21 20 37 37 H 1.09000 * 109.37935 * 187.00736 * 23 22 21 38 38 H 1.08991 * 109.38590 * 306.79118 * 23 22 21 39 39 H 1.08000 * 119.96806 * 179.70271 * 25 13 12 40 40 H 1.07998 * 120.03292 * 180.27477 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3685 -0.0016 10 6 2.0698 -3.5047 0.1045 11 6 3.4569 -3.4396 0.0921 12 6 4.2021 -4.5974 0.1997 13 6 3.5682 -5.8207 0.3203 14 6 4.3844 -7.0821 0.4381 15 7 4.6550 -7.3585 1.8511 16 6 5.3732 -8.4442 2.1998 17 8 5.7961 -9.1922 1.3438 18 6 5.6464 -8.7320 3.6537 19 1 5.6096 -7.8012 4.2198 20 6 7.0318 -9.3565 3.7951 21 16 7.4620 -9.5195 5.5473 22 6 6.2024 -10.6565 6.1822 23 6 4.8168 -10.0319 6.0408 24 16 4.3867 -9.8690 4.2885 25 6 2.1870 -5.8894 0.3273 26 6 1.4362 -4.7346 0.2253 27 1 -0.4850 0.8401 0.0004 28 1 3.9525 -2.4846 -0.0016 29 1 5.2809 -4.5474 0.1905 30 1 5.3271 -6.9559 -0.0944 31 1 3.8308 -7.9149 0.0044 32 1 4.3165 -6.7605 2.5357 33 1 7.0338 -10.3418 3.3288 34 1 7.7671 -8.7211 3.3012 35 1 6.2386 -11.5881 5.6177 36 1 6.3987 -10.8631 7.2342 37 1 4.0818 -10.6663 6.5363 38 1 4.8154 -9.0459 6.5054 39 1 1.6949 -6.8466 0.4168 40 1 0.3577 -4.7885 0.2352 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177095772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:47 Heat of formation + Delta-G solvation = -59.667170 kcal Electronic energy + Delta-G solvation = -23340.918353 eV Core-core repulsion = 19758.801101 eV Total energy + Delta-G solvation = -3582.117252 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.13896 -40.62647 -38.53902 -35.78310 -34.94815 -34.28698 -33.55804 -31.85258 -31.38746 -27.86012 -26.89685 -25.17061 -24.76707 -23.65690 -22.18226 -21.70397 -19.89007 -19.29956 -18.80884 -18.01571 -17.34748 -17.05363 -16.68136 -16.33368 -16.31497 -15.79318 -15.68672 -15.53317 -15.29922 -15.14159 -14.80561 -14.55723 -14.42021 -14.37017 -14.08078 -14.02902 -13.63950 -13.27888 -13.03337 -12.89685 -12.54770 -12.39477 -12.32397 -12.25279 -12.15038 -11.37679 -11.21292 -11.19880 -10.81154 -10.71154 -10.18235 -9.81935 -9.12688 -9.02611 -8.82265 -8.48401 -6.16743 0.04468 0.45140 0.55958 0.57168 1.15575 1.35944 1.38017 1.45669 1.51745 1.74553 2.15983 2.18127 2.83468 3.15643 3.21965 3.47703 3.58677 3.61786 3.81048 3.87733 4.01517 4.01746 4.16478 4.18935 4.33254 4.43154 4.55618 4.58606 4.61319 4.71183 4.74470 4.79185 5.02933 5.13533 5.25628 5.29078 5.51402 5.68436 5.73263 6.00962 6.14754 6.39611 6.96246 7.02904 7.75332 8.74118 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.002056 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.053792 B =13615.414783 C =13926.426272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.123 3.877 11 C -0.244 4.244 12 C -0.044 4.044 13 C -0.184 4.184 14 C 0.185 3.815 15 N -0.703 5.703 16 C 0.537 3.463 17 O -0.562 6.562 18 C -0.077 4.077 19 H 0.133 0.867 20 C -0.067 4.067 21 S -0.259 6.259 22 C -0.086 4.086 23 C -0.082 4.082 24 S -0.241 6.241 25 C -0.043 4.043 26 C -0.205 4.205 27 H 0.273 0.727 28 H 0.121 0.879 29 H 0.141 0.859 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.413 0.587 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.100 0.900 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.146 0.854 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.536 -19.370 13.062 27.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.072 3.928 11 C -0.263 4.263 12 C -0.062 4.062 13 C -0.185 4.185 14 C 0.062 3.938 15 N -0.355 5.355 16 C 0.320 3.680 17 O -0.442 6.442 18 C -0.210 4.210 19 H 0.151 0.849 20 C -0.217 4.217 21 S -0.031 6.031 22 C -0.235 4.235 23 C -0.232 4.232 24 S -0.015 6.015 25 C -0.061 4.061 26 C -0.224 4.224 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.159 0.841 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.249 0.751 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.118 0.882 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.163 0.837 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.432 -19.725 12.446 26.915 hybrid contribution -0.285 1.347 -0.018 1.377 sum 13.146 -18.379 12.428 25.789 Atomic orbital electron populations 1.70171 1.08034 1.28945 1.48473 1.26584 0.96820 1.02767 0.95774 0.84663 0.77410 0.74312 0.79967 1.18194 1.19787 1.18055 1.21796 0.92580 0.81322 1.53324 0.87861 1.83948 1.36075 1.12665 1.80748 1.19999 0.91681 0.87932 0.93191 1.21249 0.92965 1.00125 1.11951 1.20947 0.99875 0.90630 0.94787 1.19453 0.93396 0.94084 1.11551 1.19954 0.98676 0.93755 0.81415 1.46147 1.53386 1.26387 1.09555 1.19793 0.78018 0.80860 0.89324 1.90718 1.52592 1.48674 1.52178 1.23381 0.97543 1.03182 0.96914 0.84891 1.23289 0.96862 1.05629 0.95958 1.86993 1.44616 1.62960 1.08486 1.23664 0.93276 0.99619 1.06970 1.23748 1.00028 1.06763 0.92665 1.87369 1.40820 1.61228 1.12034 1.20876 0.93137 0.96943 0.95176 1.20445 1.00080 0.90419 1.11476 0.91788 0.86103 0.84119 0.90508 0.90811 0.75085 0.88527 0.86381 0.88187 0.83874 0.83823 0.87418 0.83670 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.18 13.67 21.61 0.30 -54.89 16 2 C -0.02 -1.19 5.49 84.84 0.47 -0.72 16 3 Si 1.02 41.55 29.55 68.60 2.03 43.58 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.41 -23.30 9.49 67.92 0.64 -22.65 16 8 H 0.10 5.27 5.20 -2.91 -0.02 5.26 16 9 O -0.23 -13.25 9.76 -22.69 -0.22 -13.47 16 10 C 0.12 5.79 6.65 22.57 0.15 5.94 16 11 C -0.24 -9.81 9.17 22.39 0.21 -9.60 16 12 C -0.04 -1.35 9.69 22.25 0.22 -1.14 16 13 C -0.18 -5.09 5.25 -19.83 -0.10 -5.20 16 14 C 0.18 4.25 5.80 85.63 0.50 4.75 16 15 N -0.70 -14.44 5.55 -466.78 -2.59 -17.03 16 16 C 0.54 11.92 6.82 87.66 0.60 12.52 16 17 O -0.56 -16.40 16.39 -3.06 -0.05 -16.45 16 18 C -0.08 -1.29 2.74 29.73 0.08 -1.20 16 19 H 0.13 1.81 8.11 -2.39 -0.02 1.79 16 20 C -0.07 -1.09 5.08 71.86 0.37 -0.73 16 21 S -0.26 -3.63 22.05 -56.49 -1.25 -4.88 16 22 C -0.09 -0.72 6.25 71.86 0.45 -0.27 16 23 C -0.08 -0.72 6.25 71.86 0.45 -0.27 16 24 S -0.24 -4.00 21.39 -56.49 -1.21 -5.21 16 25 C -0.04 -1.31 9.69 22.25 0.22 -1.09 16 26 C -0.20 -8.14 9.99 22.39 0.22 -7.92 16 27 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 29 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 30 H 0.08 1.74 8.08 -2.39 -0.02 1.73 16 31 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.41 7.39 8.44 -92.71 -0.78 6.60 16 33 H 0.10 1.81 8.06 -2.39 -0.02 1.79 16 34 H 0.12 1.92 8.13 -2.40 -0.02 1.90 16 35 H 0.10 0.90 8.14 -2.40 -0.02 0.88 16 36 H 0.14 0.58 8.14 -2.40 -0.02 0.56 16 37 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.86 8.14 -2.40 -0.02 0.84 16 39 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 40 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -71.57 362.85 1.75 -69.81 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.29 Total: 26.14 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 4.46 Total: -27.60 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -2.29 Total: -71.92 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.27 Total: -29.92 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -2.45 Total: -10.09 kcal Total: -71.57 1.75 -69.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177095772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.147 kcal (2) G-P(sol) polarization free energy of solvation -71.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds