Wall clock time and date at job start Tue Mar 31 2020 22:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39905 * 126.03153 * 2 1 4 4 N 1.30893 * 108.23705 * 179.76060 * 3 2 1 5 5 N 1.40084 * 108.21952 * 0.37458 * 4 3 2 6 6 C 1.40252 * 126.05543 * 179.87971 * 5 4 3 7 7 C 1.38792 * 120.07909 * 179.67184 * 6 5 4 8 8 C 1.38131 * 119.96024 * 179.97438 * 7 6 5 9 9 C 1.38295 * 120.10983 * 0.02697 * 8 7 6 10 10 S 1.76208 * 119.92284 * 179.97438 * 9 8 7 11 11 O 1.42092 * 106.40084 * 203.53912 * 10 9 8 12 12 O 1.42103 * 106.39854 * 336.46002 * 10 9 8 13 13 N 1.65597 * 107.21702 * 89.99806 * 10 9 8 14 14 C 1.46501 * 119.99850 * 270.00105 * 13 10 9 15 15 C 1.36934 * 119.99794 * 90.00174 * 13 10 9 16 16 H 1.07998 * 120.00432 * 20.61492 * 15 13 10 17 17 C 1.38814 * 119.99512 * 200.61132 * 15 13 10 18 18 N 1.31611 * 120.00415 * 14.76858 * 17 15 13 19 19 Si 1.86804 * 119.99821 * 194.76001 * 17 15 13 20 20 H 1.48506 * 109.47126 * 85.01005 * 19 17 15 21 21 H 1.48499 * 109.47102 * 205.01008 * 19 17 15 22 22 H 1.48498 * 109.47073 * 325.01416 * 19 17 15 23 23 C 1.38245 * 120.15613 * 359.97438 * 9 8 7 24 24 C 1.38341 * 120.04041 * 359.97438 * 23 9 8 25 25 F 1.35092 * 120.05786 * 180.02562 * 24 23 9 26 26 C 1.35203 * 107.89450 * 359.62461 * 5 4 3 27 27 H 1.09005 * 109.47009 * 269.99827 * 1 2 3 28 28 H 1.08998 * 109.47575 * 30.00008 * 1 2 3 29 29 H 1.08997 * 109.47248 * 149.99929 * 1 2 3 30 30 H 1.07993 * 125.88547 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.02093 * 0.02562 * 7 6 5 32 32 H 1.08001 * 119.94488 * 180.29764 * 8 7 6 33 33 H 1.08994 * 109.47536 * 95.00316 * 14 13 10 34 34 H 1.09007 * 109.46862 * 215.00446 * 14 13 10 35 35 H 1.09001 * 109.47479 * 334.99936 * 14 13 10 36 36 H 0.97003 * 120.00625 * 179.97438 * 18 17 15 37 37 H 1.07996 * 119.98250 * 180.02562 * 23 9 8 38 38 H 1.08002 * 126.14586 * 180.19633 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1314 0.0000 4 7 3.5763 0.7314 0.0052 5 7 3.5867 -0.6694 0.0000 6 6 4.7266 -1.4864 0.0006 7 6 4.5924 -2.8678 0.0019 8 6 5.7168 -3.6702 0.0020 9 6 6.9764 -3.0993 0.0015 10 16 8.4074 -4.1275 0.0023 11 8 9.4625 -3.3463 0.5460 12 8 8.0040 -5.3761 0.5479 13 7 8.8054 -4.4150 -1.5792 14 6 8.2411 -5.5725 -2.2778 15 6 9.6619 -3.5707 -2.2340 16 1 10.3284 -2.9342 -1.6709 17 6 9.6736 -3.5332 -3.6216 18 7 8.6861 -4.0743 -4.3029 19 14 11.0909 -2.7143 -4.5218 20 1 12.2033 -3.6852 -4.6808 21 1 10.6325 -2.2632 -5.8603 22 1 11.5636 -1.5437 -3.7399 23 6 7.1156 -1.7239 0.0002 24 6 5.9938 -0.9143 -0.0010 25 9 6.1294 0.4298 -0.0027 26 6 2.3032 -1.0944 -0.0001 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.9947 2.1580 0.0004 31 1 3.6094 -3.3152 0.0019 32 1 5.6121 -4.7451 -0.0019 33 1 7.3518 -5.2664 -2.8287 34 1 8.9793 -5.9727 -2.9729 35 1 7.9724 -6.3397 -1.5516 36 1 8.6941 -4.0477 -5.2726 37 1 8.1006 -1.2811 -0.0006 38 1 1.9726 -2.1226 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180676043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:52 Heat of formation + Delta-G solvation = 5.880183 kcal Electronic energy + Delta-G solvation = -27041.298536 eV Core-core repulsion = 22928.103206 eV Total energy + Delta-G solvation = -4113.195330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.084 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.53302 -41.60502 -38.64226 -35.94126 -35.83488 -34.52180 -33.93858 -31.97116 -31.66482 -30.44923 -29.47872 -26.67685 -26.60619 -23.70805 -23.45648 -22.92637 -21.07624 -20.13413 -18.70066 -18.23054 -17.64410 -16.92043 -16.38164 -16.15335 -15.80664 -15.48176 -15.00117 -14.88922 -14.76621 -14.37267 -13.89495 -13.61361 -13.42238 -13.38275 -13.21192 -13.14869 -12.82476 -12.31140 -12.22427 -12.12397 -11.93717 -11.55341 -11.49389 -11.18212 -11.09807 -10.80699 -10.72460 -10.67534 -10.42337 -10.35192 -10.23467 -9.99156 -9.45202 -9.11633 -8.72532 -8.28960 -8.00353 -6.74571 -4.16481 0.59278 1.31595 1.58641 2.04384 2.23838 2.58852 3.04584 3.08735 3.12678 3.56313 3.86855 4.13373 4.34426 4.42750 4.60624 4.62088 4.77807 4.97756 5.01922 5.05408 5.23344 5.44332 5.48632 5.52880 5.59018 5.68284 5.75379 5.91237 5.92630 6.07107 6.16302 6.26782 6.49065 6.49304 6.72378 6.76017 6.94943 7.08292 7.12196 7.27624 7.50799 8.10373 8.45907 8.93092 10.20397 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.003600 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.192455 B = 7776.391880 C = 8397.001516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.233 4.233 3 C 0.052 3.948 4 N -0.273 5.273 5 N -0.319 5.319 6 C 0.144 3.856 7 C -0.139 4.139 8 C -0.019 4.019 9 C -0.631 4.631 10 S 2.514 3.486 11 O -0.981 6.981 12 O -0.998 6.998 13 N -0.796 5.796 14 C 0.117 3.883 15 C -0.235 4.235 16 H 0.121 0.879 17 C 0.031 3.969 18 N -0.826 5.826 19 Si 0.931 3.069 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.261 1.261 23 C -0.038 4.038 24 C 0.077 3.923 25 F -0.120 7.120 26 C 0.052 3.948 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.188 0.812 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.278 0.722 37 H 0.155 0.845 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.154 3.098 2.317 12.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.244 4.244 3 C -0.136 4.136 4 N -0.091 5.091 5 N -0.094 5.094 6 C 0.050 3.950 7 C -0.160 4.160 8 C -0.039 4.039 9 C -0.707 4.707 10 S 2.610 3.390 11 O -0.971 6.971 12 O -0.987 6.987 13 N -0.619 5.619 14 C -0.029 4.029 15 C -0.385 4.385 16 H 0.138 0.862 17 C -0.183 4.183 18 N -0.465 5.465 19 Si 0.756 3.244 20 H -0.195 1.195 21 H -0.205 1.205 22 H -0.185 1.185 23 C -0.058 4.058 24 C 0.056 3.944 25 F -0.099 7.099 26 C -0.090 4.090 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.205 0.795 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.173 0.827 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.748 3.101 3.165 11.626 hybrid contribution -1.153 0.985 -0.879 1.753 sum -11.902 4.086 2.287 12.790 Atomic orbital electron populations 1.20062 0.88782 1.02376 1.01689 1.20204 0.97319 0.91617 1.15276 1.24048 0.89883 1.00123 0.99511 1.77748 1.21011 0.87265 1.23065 1.45728 1.03801 1.04784 1.55064 1.17689 0.83268 0.89716 1.04351 1.20772 1.00549 0.89486 1.05234 1.20739 0.90016 1.00343 0.92801 1.32792 1.21688 1.08403 1.07817 1.12774 0.74237 0.73507 0.78445 1.93351 1.53479 1.70917 1.79340 1.93334 1.83418 1.42171 1.79775 1.54469 1.45792 1.28323 1.33302 1.21399 0.99965 0.85834 0.95730 1.20194 1.07398 1.20769 0.90139 0.86161 1.25827 0.98320 0.96720 0.97421 1.70099 1.28931 1.38731 1.08719 0.85832 0.80122 0.79898 0.78547 1.19472 1.20456 1.18543 1.20864 0.98067 0.92334 0.94537 1.17420 0.92189 0.78144 1.06693 1.91550 1.96381 1.28150 1.93794 1.22413 0.83277 1.00604 1.02739 0.91924 0.91648 0.91945 0.79484 0.84487 0.83455 0.92679 0.90657 0.93290 0.91129 0.82730 0.80535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.37 36.01 0.37 -0.16 16 2 C -0.23 -2.66 6.10 -105.03 -0.64 -3.30 16 3 C 0.05 0.66 11.96 -17.33 -0.21 0.45 16 4 N -0.27 -4.58 10.81 30.64 0.33 -4.25 16 5 N -0.32 -5.21 3.80 -10.65 -0.04 -5.25 16 6 C 0.14 2.53 6.70 -83.50 -0.56 1.97 16 7 C -0.14 -2.15 9.45 -39.42 -0.37 -2.53 16 8 C -0.02 -0.33 9.51 -39.60 -0.38 -0.71 16 9 C -0.63 -12.65 5.97 -39.56 -0.24 -12.88 16 10 S 2.51 55.91 5.65 -107.50 -0.61 55.30 16 11 O -0.98 -24.05 16.06 -57.17 -0.92 -24.97 16 12 O -1.00 -23.04 15.83 -57.17 -0.90 -23.95 16 13 N -0.80 -18.06 3.31 -66.69 -0.22 -18.28 16 14 C 0.12 2.43 8.94 59.85 0.53 2.97 16 15 C -0.23 -5.53 9.45 -15.06 -0.14 -5.67 16 16 H 0.12 2.81 7.16 -52.49 -0.38 2.44 16 17 C 0.03 0.70 5.07 -17.43 -0.09 0.61 16 18 N -0.83 -18.98 10.67 55.49 0.59 -18.39 16 19 Si 0.93 17.83 29.58 -169.99 -5.03 12.80 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 21 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 23 C -0.04 -0.75 9.49 -39.54 -0.38 -1.13 16 24 C 0.08 1.51 7.29 -39.25 -0.29 1.22 16 25 F -0.12 -2.40 15.54 2.25 0.03 -2.37 16 26 C 0.05 0.65 10.71 -17.10 -0.18 0.47 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.14 1.56 6.74 -52.48 -0.35 1.21 16 32 H 0.15 2.29 7.61 -52.49 -0.40 1.89 16 33 H 0.05 1.15 7.40 -51.93 -0.38 0.77 16 34 H 0.07 1.58 7.22 -51.93 -0.37 1.21 16 35 H 0.05 0.94 6.91 -51.93 -0.36 0.58 16 36 H 0.28 6.00 8.31 -40.82 -0.34 5.66 16 37 H 0.16 3.03 7.61 -52.49 -0.40 2.63 16 38 H 0.18 1.61 7.04 -52.49 -0.37 1.24 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -30.20 342.08 -8.01 -38.21 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -3.84 Total: 4.66 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -2.56 Total: -18.68 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.66 Total: -46.16 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -1.82 Total: -48.91 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.03 Total: -2.37 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 16 Polarization: 55.91 SS G_CDS: -0.61 Total: 55.30 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.20 -8.01 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180676043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.094 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds