Wall clock time and date at job start Tue Mar 31 2020 22:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39905 * 126.03153 * 2 1 4 4 N 1.30893 * 108.23705 * 179.76060 * 3 2 1 5 5 N 1.40084 * 108.21952 * 0.37458 * 4 3 2 6 6 C 1.40252 * 126.05543 * 179.87971 * 5 4 3 7 7 C 1.38792 * 120.07909 * 179.67184 * 6 5 4 8 8 C 1.38131 * 119.96024 * 179.97438 * 7 6 5 9 9 C 1.38295 * 120.10983 * 0.02697 * 8 7 6 10 10 S 1.76208 * 119.92284 * 179.97438 * 9 8 7 11 11 O 1.42092 * 106.40084 * 203.53912 * 10 9 8 12 12 O 1.42103 * 106.39854 * 336.46002 * 10 9 8 13 13 N 1.65597 * 107.21702 * 89.99806 * 10 9 8 14 14 C 1.46501 * 119.99850 * 270.00105 * 13 10 9 15 15 C 1.36934 * 119.99794 * 90.00174 * 13 10 9 16 16 H 1.07998 * 120.00432 * 20.61492 * 15 13 10 17 17 C 1.38814 * 119.99512 * 200.61132 * 15 13 10 18 18 N 1.31611 * 120.00415 * 14.76858 * 17 15 13 19 19 Si 1.86804 * 119.99821 * 194.76001 * 17 15 13 20 20 H 1.48506 * 109.47126 * 85.01005 * 19 17 15 21 21 H 1.48499 * 109.47102 * 205.01008 * 19 17 15 22 22 H 1.48498 * 109.47073 * 325.01416 * 19 17 15 23 23 C 1.38245 * 120.15613 * 359.97438 * 9 8 7 24 24 C 1.38341 * 120.04041 * 359.97438 * 23 9 8 25 25 F 1.35092 * 120.05786 * 180.02562 * 24 23 9 26 26 C 1.35203 * 107.89450 * 359.62461 * 5 4 3 27 27 H 1.09005 * 109.47009 * 269.99827 * 1 2 3 28 28 H 1.08998 * 109.47575 * 30.00008 * 1 2 3 29 29 H 1.08997 * 109.47248 * 149.99929 * 1 2 3 30 30 H 1.07993 * 125.88547 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.02093 * 0.02562 * 7 6 5 32 32 H 1.08001 * 119.94488 * 180.29764 * 8 7 6 33 33 H 1.08994 * 109.47536 * 95.00316 * 14 13 10 34 34 H 1.09007 * 109.46862 * 215.00446 * 14 13 10 35 35 H 1.09001 * 109.47479 * 334.99936 * 14 13 10 36 36 H 0.97003 * 120.00625 * 179.97438 * 18 17 15 37 37 H 1.07996 * 119.98250 * 180.02562 * 23 9 8 38 38 H 1.08002 * 126.14586 * 180.19633 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1314 0.0000 4 7 3.5763 0.7314 0.0052 5 7 3.5867 -0.6694 0.0000 6 6 4.7266 -1.4864 0.0006 7 6 4.5924 -2.8678 0.0019 8 6 5.7168 -3.6702 0.0020 9 6 6.9764 -3.0993 0.0015 10 16 8.4074 -4.1275 0.0023 11 8 9.4625 -3.3463 0.5460 12 8 8.0040 -5.3761 0.5479 13 7 8.8054 -4.4150 -1.5792 14 6 8.2411 -5.5725 -2.2778 15 6 9.6619 -3.5707 -2.2340 16 1 10.3284 -2.9342 -1.6709 17 6 9.6736 -3.5332 -3.6216 18 7 8.6861 -4.0743 -4.3029 19 14 11.0909 -2.7143 -4.5218 20 1 12.2033 -3.6852 -4.6808 21 1 10.6325 -2.2632 -5.8603 22 1 11.5636 -1.5437 -3.7399 23 6 7.1156 -1.7239 0.0002 24 6 5.9938 -0.9143 -0.0010 25 9 6.1294 0.4298 -0.0027 26 6 2.3032 -1.0944 -0.0001 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.9947 2.1580 0.0004 31 1 3.6094 -3.3152 0.0019 32 1 5.6121 -4.7451 -0.0019 33 1 7.3518 -5.2664 -2.8287 34 1 8.9793 -5.9727 -2.9729 35 1 7.9724 -6.3397 -1.5516 36 1 8.6941 -4.0477 -5.2726 37 1 8.1006 -1.2811 -0.0006 38 1 1.9726 -2.1226 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180676043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:51 Heat of formation + Delta-G solvation = -12.674766 kcal Electronic energy + Delta-G solvation = -27042.103139 eV Core-core repulsion = 22928.103206 eV Total energy + Delta-G solvation = -4113.999933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.084 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.02648 -42.65651 -40.01334 -37.84299 -37.52845 -36.43689 -35.11283 -33.36644 -32.92859 -31.82672 -30.71175 -28.30306 -27.58853 -25.40333 -24.72635 -24.26834 -22.27061 -21.17288 -20.39948 -19.68421 -19.03861 -18.61894 -18.10525 -17.60175 -17.14083 -16.99520 -16.47493 -16.19512 -16.10684 -16.02160 -15.18884 -15.04898 -14.85587 -14.54103 -14.32328 -14.12999 -14.02196 -13.74237 -13.65420 -13.42729 -13.19911 -13.03790 -12.94807 -12.81423 -12.67769 -12.65907 -12.36908 -12.13392 -11.96100 -11.70152 -11.65549 -11.60201 -11.12473 -10.27237 -10.07620 -9.98101 -9.19007 -8.41002 -5.94979 -0.75784 -0.15143 -0.10174 0.89519 1.12273 1.49925 1.52630 1.60678 1.67766 2.11865 2.29789 2.63391 2.83276 2.90465 3.18568 3.20554 3.51245 3.70677 3.90121 3.95634 4.08899 4.20227 4.27615 4.33006 4.58504 4.59658 4.62334 4.75052 4.81716 4.98502 4.98853 5.06561 5.17116 5.22833 5.25757 5.37170 5.38201 5.62070 5.64264 5.95530 6.38686 6.47761 6.75642 7.21238 8.55515 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.003600 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.192455 B = 7776.391880 C = 8397.001516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.226 4.226 3 C 0.058 3.942 4 N -0.331 5.331 5 N -0.342 5.342 6 C 0.156 3.844 7 C -0.125 4.125 8 C -0.015 4.015 9 C -0.657 4.657 10 S 2.556 3.444 11 O -1.008 7.008 12 O -1.004 7.004 13 N -0.814 5.814 14 C 0.124 3.876 15 C -0.277 4.277 16 H 0.108 0.892 17 C 0.003 3.997 18 N -0.853 5.853 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.265 1.265 23 C -0.049 4.049 24 C 0.049 3.951 25 F -0.131 7.131 26 C 0.043 3.957 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.219 0.781 31 H 0.188 0.812 32 H 0.170 0.830 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.280 0.720 37 H 0.144 0.856 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.624 2.880 2.597 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.236 4.236 3 C -0.130 4.130 4 N -0.149 5.149 5 N -0.118 5.118 6 C 0.061 3.939 7 C -0.146 4.146 8 C -0.035 4.035 9 C -0.737 4.737 10 S 2.654 3.346 11 O -0.998 6.998 12 O -0.994 6.994 13 N -0.639 5.639 14 C -0.022 4.022 15 C -0.424 4.424 16 H 0.126 0.874 17 C -0.207 4.207 18 N -0.492 5.492 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.190 1.190 23 C -0.069 4.069 24 C 0.027 3.973 25 F -0.109 7.109 26 C -0.097 4.097 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.236 0.764 31 H 0.206 0.794 32 H 0.188 0.812 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -14.193 2.873 3.397 14.874 hybrid contribution -0.426 1.171 -0.734 1.446 sum -14.619 4.043 2.663 15.400 Atomic orbital electron populations 1.20175 0.85773 1.03795 1.02883 1.20737 0.99143 0.90574 1.13145 1.24771 0.89104 1.02141 0.96945 1.77734 1.23434 0.88066 1.25635 1.45797 1.04340 1.04745 1.56945 1.17935 0.83297 0.90838 1.01856 1.21203 1.02135 0.88264 1.02981 1.21086 0.89409 1.01713 0.91255 1.32233 1.21866 1.07934 1.11664 1.10236 0.74020 0.73052 0.77276 1.93328 1.55137 1.71704 1.79681 1.93330 1.83729 1.42581 1.79742 1.54095 1.47614 1.29481 1.32751 1.21348 0.99424 0.85559 0.95854 1.20115 1.09537 1.21937 0.90803 0.87423 1.26357 0.99938 0.96978 0.97450 1.70143 1.29946 1.40267 1.08863 0.85071 0.77952 0.78959 0.77426 1.18884 1.20036 1.18980 1.20788 0.98166 0.92675 0.95273 1.17558 0.93161 0.77831 1.08718 1.91511 1.96512 1.28776 1.94114 1.23194 0.81825 1.02803 1.01839 0.90704 0.90352 0.90510 0.76440 0.79444 0.81239 0.93041 0.91432 0.91810 0.90943 0.83865 0.76918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.37 71.24 0.74 0.03 16 2 C -0.23 -4.27 6.10 -20.13 -0.12 -4.39 16 3 C 0.06 1.33 11.96 85.24 1.02 2.35 16 4 N -0.33 -10.73 10.81 -56.98 -0.62 -11.35 16 5 N -0.34 -10.47 3.80 -187.60 -0.71 -11.18 16 6 C 0.16 5.25 6.70 38.12 0.26 5.50 16 7 C -0.12 -3.46 9.45 22.38 0.21 -3.25 16 8 C -0.01 -0.49 9.51 22.26 0.21 -0.27 16 9 C -0.66 -26.29 5.97 22.28 0.13 -26.16 16 10 S 2.56 114.97 5.65 -56.49 -0.32 114.66 16 11 O -1.01 -50.97 16.06 -128.00 -2.06 -53.03 16 12 O -1.00 -45.58 15.83 -128.00 -2.03 -47.61 16 13 N -0.81 -37.85 3.31 -364.89 -1.21 -39.06 16 14 C 0.12 5.21 8.94 127.77 1.14 6.35 16 15 C -0.28 -13.59 9.45 84.03 0.79 -12.80 16 16 H 0.11 5.36 7.16 -2.91 -0.02 5.34 16 17 C 0.00 0.16 5.07 84.86 0.43 0.59 16 18 N -0.85 -40.10 10.67 21.65 0.23 -39.86 16 19 Si 0.98 37.46 29.58 68.60 2.03 39.49 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 23 C -0.05 -2.00 9.49 22.30 0.21 -1.79 16 24 C 0.05 1.95 7.29 22.48 0.16 2.11 16 25 F -0.13 -5.41 15.54 44.97 0.70 -4.71 16 26 C 0.04 0.92 10.71 83.50 0.89 1.81 16 27 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.22 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.19 3.20 6.74 -2.91 -0.02 3.18 16 32 H 0.17 4.73 7.61 -2.91 -0.02 4.70 16 33 H 0.05 2.17 7.40 -2.39 -0.02 2.15 16 34 H 0.07 2.91 7.22 -2.38 -0.02 2.89 16 35 H 0.06 2.42 6.91 -2.39 -0.02 2.40 16 36 H 0.28 12.32 8.31 -92.71 -0.77 11.55 16 37 H 0.14 6.03 7.61 -2.91 -0.02 6.01 16 38 H 0.21 2.67 7.04 -2.91 -0.02 2.65 16 Total: -1.00 -67.77 342.08 3.22 -64.56 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 1.11 Total: 18.02 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 6.08 Total: -29.92 kcal Atomic # 7 Polarization: -99.15 SS G_CDS: -2.31 Total: -101.45 kcal Atomic # 8 Polarization: -96.56 SS G_CDS: -4.08 Total: -100.64 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.70 Total: -4.71 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Atomic # 16 Polarization: 114.97 SS G_CDS: -0.32 Total: 114.66 kcal Total: -67.77 3.22 -64.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180676043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.883 kcal (2) G-P(sol) polarization free energy of solvation -67.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds