Wall clock time and date at job start Tue Mar 31 2020 21:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00253 * 2 1 4 4 H 1.48506 * 109.47294 * 270.00140 * 3 2 1 5 5 H 1.48498 * 109.47179 * 30.00018 * 3 2 1 6 6 H 1.48499 * 109.47254 * 150.00152 * 3 2 1 7 7 C 1.37879 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99482 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00112 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47038 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47094 * 179.97438 * 10 9 7 12 12 S 1.65597 * 119.99926 * 165.27799 * 11 10 9 13 13 O 1.42096 * 106.40195 * 178.26439 * 12 11 10 14 14 O 1.42108 * 106.40105 * 311.18495 * 12 11 10 15 15 C 1.76199 * 107.22117 * 64.72196 * 12 11 10 16 16 C 1.39219 * 119.54907 * 90.00186 * 15 12 11 17 17 C 1.36311 * 121.03073 * 180.02562 * 16 15 12 18 18 C 1.40166 * 119.58957 * 359.97438 * 17 16 15 19 19 N 1.34104 * 121.94342 * 180.02562 * 18 17 16 20 20 C 1.31713 * 120.37410 * 179.97438 * 19 18 17 21 21 O 1.35418 * 118.60711 * 179.97438 * 20 19 18 22 22 N 1.32915 * 122.78266 * 0.02613 * 20 19 18 23 23 C 1.32291 * 121.47609 * 359.97143 * 22 20 19 24 24 O 1.35271 * 120.84234 * 180.02562 * 23 22 20 25 25 C 1.41500 * 118.31725 * 0.02562 * 23 22 20 26 26 C 1.36372 * 119.55079 * 269.73100 * 15 12 11 27 27 H 0.97005 * 120.00004 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47449 * 59.99680 * 9 7 2 29 29 H 1.09002 * 109.46981 * 299.98904 * 9 7 2 30 30 H 1.09007 * 109.47007 * 59.99663 * 10 9 7 31 31 H 1.08995 * 109.47080 * 299.99907 * 10 9 7 32 32 H 0.97001 * 119.99790 * 344.99588 * 11 10 9 33 33 H 1.08000 * 119.48711 * 359.97310 * 16 15 12 34 34 H 1.08004 * 120.20188 * 179.97438 * 17 16 15 35 35 H 0.96693 * 114.00511 * 90.00399 * 21 20 19 36 36 H 0.96696 * 113.99866 * 89.99706 * 24 23 22 37 37 H 1.08001 * 120.23975 * 359.97438 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 7 5.4865 -2.6366 -0.0001 12 16 6.3144 -4.0237 0.3642 13 8 7.6950 -3.7114 0.2394 14 8 5.7376 -4.5333 1.5588 15 6 5.9528 -5.1948 -0.9016 16 6 6.7603 -5.2530 -2.0342 17 6 6.5080 -6.1468 -3.0320 18 6 5.4193 -7.0223 -2.9180 19 7 5.1281 -7.9202 -3.8705 20 6 4.0976 -8.7285 -3.7311 21 8 3.8359 -9.6212 -4.7153 22 7 3.3030 -8.7045 -2.6659 23 6 3.5060 -7.8557 -1.6717 24 8 2.6896 -7.8427 -0.5933 25 6 4.5989 -6.9617 -1.7650 26 6 4.8890 -6.0356 -0.7561 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6808 0.8904 29 1 3.8752 -0.6798 -0.8896 30 1 3.6584 -3.1503 -0.8903 31 1 3.6578 -3.1506 0.8896 32 1 5.9714 -1.8252 -0.2176 33 1 7.5993 -4.5789 -2.1241 34 1 7.1429 -6.1800 -3.9050 35 1 4.2788 -10.4731 -4.6015 36 1 2.9710 -8.4315 0.1202 37 1 4.2725 -5.9845 0.1292 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273496686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:37 Heat of formation + Delta-G solvation = -75.505580 kcal Electronic energy + Delta-G solvation = -26566.253569 eV Core-core repulsion = 22437.156298 eV Total energy + Delta-G solvation = -4129.097271 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.02855 -39.04272 -38.57332 -37.28465 -36.65524 -35.87868 -35.66466 -33.85126 -32.74832 -31.81727 -30.47168 -29.77902 -25.39802 -24.81899 -24.63950 -22.93001 -21.06046 -20.74532 -19.76376 -19.30188 -18.64370 -18.26838 -17.38691 -17.09159 -16.84706 -16.47147 -16.16051 -15.48363 -15.23523 -14.67286 -14.37886 -14.31068 -14.25986 -14.16631 -13.84066 -13.06442 -12.69263 -12.62478 -12.48049 -12.28872 -12.26548 -12.12559 -11.98965 -11.75195 -11.66923 -11.43524 -11.37196 -10.99115 -10.54156 -10.13527 -9.95172 -9.86936 -9.76636 -9.38787 -9.16022 -8.99091 -8.64042 -6.14185 -4.14873 -0.54722 -0.00604 0.38371 1.16401 2.00281 2.39266 2.97250 3.06043 3.24239 3.32436 3.32900 3.34154 3.70239 3.72683 3.90370 4.16458 4.35803 4.36141 4.57250 4.75640 4.86578 4.96641 5.19353 5.30441 5.36970 5.49850 5.54139 5.63082 5.95419 6.06533 6.15092 6.26959 6.41883 6.78523 6.94986 7.04802 7.12317 7.19920 7.45271 7.63940 8.38459 8.88536 9.46057 10.98589 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.003487 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.818432 B = 8028.906935 C = 9333.005963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.076 0.924 9 C -0.017 4.017 10 C 0.123 3.877 11 N -1.111 6.111 12 S 2.695 3.305 13 O -0.963 6.963 14 O -0.952 6.952 15 C -0.683 4.683 16 C 0.010 3.990 17 C -0.123 4.123 18 C 0.230 3.770 19 N -0.527 5.527 20 C 0.541 3.459 21 O -0.453 6.453 22 N -0.561 5.561 23 C 0.456 3.544 24 O -0.459 6.459 25 C -0.213 4.213 26 C 0.063 3.937 27 H 0.265 0.735 28 H 0.027 0.973 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.418 0.582 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.415 0.585 36 H 0.420 0.580 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.305 -17.461 -3.840 22.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.565 4.565 8 H 0.094 0.906 9 C -0.056 4.056 10 C -0.001 4.001 11 N -0.873 5.873 12 S 2.781 3.219 13 O -0.953 6.953 14 O -0.942 6.942 15 C -0.768 4.768 16 C -0.012 4.012 17 C -0.142 4.142 18 C 0.103 3.897 19 N -0.255 5.255 20 C 0.236 3.764 21 O -0.257 6.257 22 N -0.297 5.297 23 C 0.256 3.744 24 O -0.268 6.268 25 C -0.220 4.220 26 C 0.041 3.959 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.253 0.747 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.275 0.725 36 H 0.282 0.718 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 13.764 -17.561 -4.470 22.756 hybrid contribution 0.513 0.742 0.061 0.905 sum 14.278 -16.818 -4.410 22.498 Atomic orbital electron populations 1.69897 1.06304 1.27122 1.50206 1.24990 0.94750 0.99184 0.94278 0.86782 0.80409 0.83560 0.78540 1.20246 1.21254 1.18883 1.20936 0.88664 0.94898 1.52032 0.90591 1.19752 0.97706 0.90814 0.97327 1.21524 0.74871 1.02448 1.01266 1.55528 1.17670 1.25991 1.88133 1.01956 0.72933 0.73078 0.73887 1.93576 1.31110 1.83686 1.86890 1.93604 1.78785 1.80015 1.41793 1.31071 1.06727 1.19811 1.19184 1.20719 0.95894 0.94993 0.89641 1.20758 0.97008 0.95610 1.00855 1.18735 0.92959 0.91114 0.86884 1.68462 1.19407 1.08191 1.29481 1.19876 0.84251 0.88729 0.83517 1.84725 1.72434 1.27032 1.41526 1.67337 1.31763 1.27511 1.03131 1.19311 0.82898 0.85517 0.86693 1.84698 1.49746 1.66946 1.25368 1.19654 0.99125 1.03432 0.99805 1.20881 0.91336 0.87551 0.96126 0.92513 0.95474 0.96211 0.92357 0.90441 0.74711 0.82813 0.82957 0.72459 0.71767 0.82002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 13.96 55.43 0.77 -25.99 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.53 -14.13 9.66 -34.44 -0.33 -14.46 16 8 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.37 4.18 -27.88 -0.12 -0.48 16 10 C 0.12 2.15 6.16 -4.04 -0.02 2.12 16 11 N -1.11 -15.47 6.00 -10.61 -0.06 -15.53 16 12 S 2.69 35.09 5.72 -107.50 -0.62 34.47 16 13 O -0.96 -13.69 17.23 -57.17 -0.99 -14.68 16 14 O -0.95 -14.70 16.70 -57.17 -0.95 -15.66 16 15 C -0.68 -7.85 5.91 -39.89 -0.24 -8.08 16 16 C 0.01 0.10 9.42 -39.91 -0.38 -0.28 16 17 C -0.12 -1.25 10.01 -39.55 -0.40 -1.64 16 18 C 0.23 2.77 6.61 -84.85 -0.56 2.20 16 19 N -0.53 -6.50 10.47 -12.79 -0.13 -6.64 16 20 C 0.54 6.39 8.65 -91.25 -0.79 5.60 16 21 O -0.45 -4.24 13.63 -17.95 -0.24 -4.48 16 22 N -0.56 -6.86 10.44 -14.40 -0.15 -7.01 16 23 C 0.46 5.16 7.89 -16.11 -0.13 5.04 16 24 O -0.46 -4.21 12.92 -17.51 -0.23 -4.43 16 25 C -0.21 -2.50 5.75 -106.70 -0.61 -3.11 16 26 C 0.06 0.71 9.05 -39.60 -0.36 0.35 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 29 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 1.35 7.76 -51.93 -0.40 0.95 16 32 H 0.42 5.12 8.65 -34.47 -0.30 4.82 16 33 H 0.15 1.22 7.57 -52.49 -0.40 0.83 16 34 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.42 1.39 9.06 45.56 0.41 1.80 16 36 H 0.42 1.33 9.06 45.56 0.41 1.74 16 37 H 0.16 1.64 7.21 -52.49 -0.38 1.26 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -37.74 340.65 -8.01 -45.75 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -1.85 Total: 3.91 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -4.03 Total: -10.87 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.43 Total: -55.17 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -2.41 Total: -39.26 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Atomic # 16 Polarization: 35.09 SS G_CDS: -0.62 Total: 34.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.74 -8.01 -45.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273496686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.752 kcal (2) G-P(sol) polarization free energy of solvation -37.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds