Wall clock time and date at job start Tue Mar 31 2020 22:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46493 * 109.47352 * 2 1 4 4 C 1.37096 * 119.99891 * 264.47846 * 3 2 1 5 5 H 1.08005 * 120.00282 * 146.17428 * 4 3 2 6 6 C 1.38957 * 120.00280 * 326.17385 * 4 3 2 7 7 N 1.31407 * 119.99772 * 337.75554 * 6 4 3 8 8 Si 1.86802 * 120.00137 * 157.74506 * 6 4 3 9 9 H 1.48497 * 109.47224 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46559 * 120.00508 * 8 6 4 11 11 H 1.48493 * 109.47151 * 240.00074 * 8 6 4 12 12 C 1.34777 * 120.00425 * 84.75926 * 3 2 1 13 13 O 1.21292 * 120.00383 * 180.02562 * 12 3 2 14 14 C 1.50700 * 119.99728 * 359.97438 * 12 3 2 15 15 N 1.46504 * 109.47186 * 180.02562 * 14 12 3 16 16 N 1.40080 * 126.03778 * 90.02225 * 15 14 12 17 17 C 1.30845 * 108.22573 * 180.02562 * 16 15 14 18 18 C 1.50705 * 125.89467 * 179.97438 * 17 16 15 19 19 F 1.39897 * 109.46794 * 5.02282 * 18 17 16 20 20 F 1.39895 * 109.46981 * 125.02557 * 18 17 16 21 21 F 1.39903 * 109.46908 * 245.02529 * 18 17 16 22 22 C 1.39929 * 108.21547 * 0.02562 * 17 16 15 23 23 Cl 1.73601 * 126.04950 * 179.97438 * 22 17 16 24 24 C 1.35049 * 126.03572 * 269.72462 * 15 14 12 25 25 C 1.50703 * 126.13796 * 359.97150 * 24 15 14 26 26 H 1.08999 * 109.47252 * 300.00634 * 1 2 3 27 27 H 1.09012 * 109.46950 * 60.00151 * 1 2 3 28 28 H 1.08998 * 109.47243 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47252 * 239.99366 * 2 1 3 30 30 H 1.09012 * 109.46950 * 119.99848 * 2 1 3 31 31 H 0.96998 * 120.00261 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47421 * 300.00496 * 14 12 3 33 33 H 1.09006 * 109.46698 * 60.00649 * 14 12 3 34 34 H 1.08997 * 109.47061 * 90.00126 * 25 24 15 35 35 H 1.08999 * 109.47221 * 210.00551 * 25 24 15 36 36 H 1.09007 * 109.46969 * 330.00758 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3545 1.9893 -1.1818 5 1 2.1875 3.0485 -1.3108 6 6 2.9103 1.2430 -2.2138 7 7 3.5122 0.1048 -1.9512 8 14 2.8015 1.8575 -3.9745 9 1 2.0795 3.1549 -4.0022 10 1 4.1704 2.0415 -4.5199 11 1 2.0687 0.8649 -4.8008 12 6 2.1425 2.0521 1.1623 13 8 2.5464 3.1958 1.1622 14 6 1.7784 1.3817 2.4619 15 7 1.9994 2.3133 3.5707 16 7 1.0602 3.2131 4.0908 17 6 1.6241 3.8729 5.0699 18 6 0.9700 4.9418 5.9071 19 9 -0.3799 5.0486 5.5554 20 9 1.0740 4.6029 7.2604 21 9 1.6087 6.1661 5.6824 22 6 2.9397 3.4157 5.2048 23 17 4.1029 3.9784 6.3641 24 6 3.1429 2.4524 4.2757 25 6 4.4178 1.6775 4.0630 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 3.8999 -0.4164 -2.6715 32 1 0.7289 1.0884 2.4379 33 1 2.3998 0.4970 2.6009 34 1 5.0482 2.2047 3.3470 35 1 4.9469 1.5812 5.0111 36 1 4.1804 0.6861 3.6771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290778049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:35 Heat of formation + Delta-G solvation = -121.901346 kcal Electronic energy + Delta-G solvation = -27808.192952 eV Core-core repulsion = 23133.183362 eV Total energy + Delta-G solvation = -4675.009589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.070 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.32188 -48.83596 -48.81755 -42.88941 -40.46495 -37.66529 -37.05566 -35.17123 -34.06982 -33.12698 -31.24455 -30.09655 -28.31705 -27.55447 -26.10653 -24.00114 -22.51667 -22.14599 -20.74407 -19.72366 -19.48849 -18.91418 -18.82518 -18.19951 -17.69051 -17.01763 -16.52289 -16.17373 -15.86043 -15.64946 -15.62483 -15.42815 -15.23328 -14.95816 -14.95245 -14.78980 -14.64353 -14.52172 -14.02823 -13.85029 -13.69260 -13.62489 -13.29046 -13.09044 -13.00279 -12.90851 -12.68912 -12.63215 -12.31512 -12.10863 -11.87724 -11.81707 -11.20536 -10.95279 -10.42131 -9.68049 -9.55054 -8.41069 -6.09725 0.16489 0.49918 0.83896 1.10420 1.32376 1.42202 1.53439 1.64632 1.85860 2.24922 2.41645 2.69594 2.90887 2.95091 3.17391 3.33589 3.57314 3.77427 3.84173 3.92851 4.08487 4.34334 4.53653 4.56761 4.60627 4.69330 4.81009 4.91357 5.01677 5.31694 5.41451 5.47045 5.56477 5.96521 6.13690 6.43741 7.09925 7.34971 7.91508 8.60424 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.003279 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.457005 B = 8536.694904 C = 8869.329093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.085 3.915 3 N -0.437 5.437 4 C -0.342 4.342 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.875 5.875 8 Si 0.974 3.026 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.261 1.261 12 C 0.426 3.574 13 O -0.621 6.621 14 C 0.120 3.880 15 N -0.321 5.321 16 N -0.248 5.248 17 C -0.019 4.019 18 C 0.563 3.437 19 F -0.168 7.168 20 F -0.155 7.155 21 F -0.165 7.165 22 C -0.173 4.173 23 Cl -0.010 7.010 24 C 0.128 3.872 25 C -0.097 4.097 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.277 0.723 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 -3.374 13.820 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.038 4.038 3 N -0.156 5.156 4 C -0.470 4.470 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.512 5.512 8 Si 0.798 3.202 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.186 1.186 12 C 0.214 3.786 13 O -0.507 6.507 14 C -0.003 4.003 15 N -0.103 5.103 16 N -0.072 5.072 17 C -0.186 4.186 18 C 0.506 3.494 19 F -0.149 7.149 20 F -0.136 7.136 21 F -0.146 7.146 22 C -0.211 4.211 23 Cl 0.018 6.982 24 C -0.001 4.001 25 C -0.155 4.155 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.177 0.823 34 H 0.103 0.897 35 H 0.136 0.864 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.316 -3.194 13.008 13.593 hybrid contribution 0.627 0.959 -0.508 1.253 sum -1.689 -2.235 12.500 12.810 Atomic orbital electron populations 1.22152 0.95391 1.02857 1.01279 1.21900 0.94025 0.82872 1.04958 1.43760 1.54605 1.13305 1.03927 1.19319 1.42190 0.94768 0.90696 0.92393 1.25897 0.93302 0.96472 1.03209 1.69926 1.31603 1.15343 1.34364 0.85186 0.78197 0.78618 0.78219 1.20285 1.20366 1.18560 1.21053 0.83249 0.88233 0.86057 1.90579 1.52364 1.20600 1.87159 1.22039 1.07481 0.89966 0.80860 1.48056 1.08184 1.28862 1.25244 1.77343 1.15631 1.04280 1.09935 1.22076 0.94971 1.01657 0.99860 1.16653 0.75823 0.79264 0.77630 1.93225 1.33600 1.96218 1.91869 1.93247 1.95812 1.92143 1.32393 1.93247 1.81826 1.45005 1.94514 1.19980 0.91786 1.05779 1.03580 1.98322 1.56011 1.88106 1.55721 1.21381 0.90961 0.96931 0.90827 1.20778 0.89460 0.99527 1.05705 0.92831 0.94251 0.89142 0.88611 0.90065 0.91310 0.84232 0.82304 0.89746 0.86391 0.88106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 10.15 71.98 0.73 -3.96 16 2 C 0.09 3.07 5.43 86.38 0.47 3.54 16 3 N -0.44 -20.11 2.56 -635.54 -1.63 -21.74 16 4 C -0.34 -18.20 8.98 84.04 0.75 -17.44 16 5 H 0.06 3.44 7.70 -2.91 -0.02 3.42 16 6 C 0.02 0.76 4.92 84.93 0.42 1.17 16 7 N -0.88 -42.52 11.33 21.66 0.25 -42.27 16 8 Si 0.97 39.97 29.61 68.60 2.03 42.00 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 12 C 0.43 19.11 7.66 87.66 0.67 19.78 16 13 O -0.62 -34.37 16.26 -3.07 -0.05 -34.42 16 14 C 0.12 3.76 5.34 85.63 0.46 4.21 16 15 N -0.32 -10.94 3.10 -338.26 -1.05 -11.99 16 16 N -0.25 -9.19 12.35 -47.34 -0.58 -9.77 16 17 C -0.02 -0.63 6.51 43.12 0.28 -0.35 16 18 C 0.56 16.92 3.36 71.24 0.24 17.16 16 19 F -0.17 -5.15 17.14 44.97 0.77 -4.38 16 20 F -0.15 -4.11 17.30 44.97 0.78 -3.34 16 21 F -0.16 -5.00 17.30 44.97 0.78 -4.22 16 22 C -0.17 -5.32 6.63 22.02 0.15 -5.17 16 23 Cl -0.01 -0.25 28.71 -2.72 -0.08 -0.33 16 24 C 0.13 3.88 6.94 41.40 0.29 4.16 16 25 C -0.10 -2.16 9.94 71.24 0.71 -1.45 16 26 H 0.05 1.45 6.59 -2.39 -0.02 1.43 16 27 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.10 3.97 5.34 -2.39 -0.01 3.95 16 30 H 0.08 2.33 6.66 -2.38 -0.02 2.31 16 31 H 0.28 12.52 8.31 -92.71 -0.77 11.75 16 32 H 0.14 3.75 6.54 -2.39 -0.02 3.74 16 33 H 0.16 3.65 6.32 -2.38 -0.02 3.64 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.12 1.97 7.91 -2.39 -0.02 1.95 16 36 H 0.10 1.82 7.08 -2.38 -0.02 1.80 16 Total: -1.00 -67.83 339.70 7.54 -60.29 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.16 Total: 8.50 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 5.16 Total: 21.66 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -3.01 Total: -85.77 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.05 Total: -34.42 kcal Atomic # 9 Polarization: -14.27 SS G_CDS: 2.33 Total: -11.94 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Total: -67.83 7.54 -60.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290778049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.609 kcal (2) G-P(sol) polarization free energy of solvation -67.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds