Wall clock time and date at job start Tue Mar 31 2020 22:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76200 * 102.99798 * 2 1 4 4 C 1.39079 * 120.01340 * 359.95647 * 3 2 1 5 5 C 1.38183 * 120.21913 * 180.02562 * 4 3 2 6 6 C 1.38041 * 120.23294 * 0.04033 * 5 4 3 7 7 C 1.39590 * 120.01432 * 359.97438 * 6 5 4 8 8 C 1.47868 * 120.10813 * 179.97438 * 7 6 5 9 9 O 1.21546 * 120.00042 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99689 * 0.02562 * 8 7 6 11 11 C 1.46496 * 119.99884 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47013 * 180.02562 * 11 10 8 13 13 O 1.21290 * 119.99794 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99606 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99487 * 180.02562 * 14 12 11 16 16 H 1.07998 * 120.00222 * 0.02562 * 15 14 12 17 17 C 1.38958 * 119.99780 * 180.02562 * 15 14 12 18 18 N 1.31413 * 119.99587 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00061 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47311 * 89.99940 * 19 17 15 21 21 H 1.48500 * 109.47494 * 210.00053 * 19 17 15 22 22 H 1.48506 * 109.47162 * 329.99994 * 19 17 15 23 23 C 1.38705 * 120.00999 * 180.02562 * 3 2 1 24 24 N 1.48025 * 120.11605 * 0.25393 * 23 3 2 25 25 O 1.21808 * 119.99789 * 269.72646 * 24 23 3 26 26 O 1.21796 * 120.00399 * 89.72301 * 24 23 3 27 27 H 1.08997 * 109.47578 * 59.99946 * 1 2 3 28 28 H 1.08996 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46843 * 299.99871 * 1 2 3 30 30 H 1.08003 * 119.89353 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.88630 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.99330 * 179.97438 * 6 5 4 33 33 H 0.96999 * 119.99837 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47111 * 300.00491 * 11 10 8 35 35 H 1.09000 * 109.47172 * 60.00541 * 11 10 8 36 36 H 0.96993 * 120.00444 * 0.02562 * 14 12 11 37 37 H 0.97008 * 119.99577 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1933 2.6656 -0.0009 5 6 1.4992 4.0131 -0.0015 6 6 2.8162 4.4268 -0.0019 7 6 3.8446 3.4830 -0.0013 8 6 5.2560 3.9239 -0.0024 9 8 6.1500 3.1003 -0.0023 10 7 5.5512 5.2389 -0.0034 11 6 6.9495 5.6758 -0.0051 12 6 7.0053 7.1818 -0.0054 13 8 5.9781 7.8266 -0.0038 14 7 8.1967 7.8119 -0.0063 15 6 8.2474 9.1819 -0.0060 16 1 7.3328 9.7562 -0.0046 17 6 9.4757 9.8317 -0.0075 18 7 9.5243 11.1449 -0.0077 19 14 11.0577 8.8384 -0.0091 20 1 11.4754 8.5750 -1.4095 21 1 12.1225 9.6022 0.6896 22 1 10.8330 7.5484 0.6914 23 6 3.5366 2.1227 -0.0005 24 7 4.6215 1.1156 -0.0068 25 8 5.0730 0.7003 1.0455 26 8 5.0625 0.7020 -1.0641 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 0.1610 2.3481 -0.0012 31 1 0.7053 4.7452 -0.0017 32 1 3.0509 5.4810 -0.0028 33 1 4.8378 5.8961 -0.0031 34 1 7.4505 5.2941 0.8846 35 1 7.4486 5.2932 -0.8954 36 1 9.0182 7.2962 -0.0071 37 1 10.3818 11.5985 -0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344120543.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:09 Heat of formation + Delta-G solvation = -53.729018 kcal Electronic energy + Delta-G solvation = -26126.336635 eV Core-core repulsion = 21998.183666 eV Total energy + Delta-G solvation = -4128.152969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.31325 -41.61899 -40.45909 -39.66834 -37.57159 -36.46810 -35.69825 -33.89576 -33.42125 -33.15602 -30.25477 -29.46501 -27.78059 -26.47539 -25.24397 -23.74223 -22.18076 -21.60648 -20.95583 -20.34258 -19.87488 -19.44619 -18.72863 -17.96645 -17.58340 -17.18358 -17.07638 -16.80300 -16.50950 -16.12778 -15.88640 -15.77662 -15.34249 -15.00696 -14.92199 -14.39228 -14.20650 -14.15993 -13.94167 -13.77154 -13.58493 -13.15261 -13.00868 -12.79771 -12.47829 -12.37428 -12.24458 -12.03492 -11.64792 -11.62151 -11.52600 -11.38231 -10.82798 -10.73987 -10.50331 -10.35306 -8.92826 -8.48819 -6.10713 -0.96274 -0.61942 -0.59658 -0.12264 0.34948 1.11664 1.27252 1.29261 1.32038 1.40935 1.54489 1.71847 2.10760 2.17337 2.71191 3.03832 3.07261 3.26772 3.43902 3.69387 3.80978 3.85309 3.97681 4.20244 4.20419 4.25900 4.27491 4.39046 4.66579 4.75499 4.84502 4.88161 5.06614 5.26376 5.43430 5.83706 6.05482 6.36933 6.42674 6.67635 6.73322 7.23837 7.70044 8.67010 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.025045 B = 0.002426 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.719800 B =11540.468247 C =12519.497147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.152 6.152 3 C -0.059 4.059 4 C -0.086 4.086 5 C -0.043 4.043 6 C -0.075 4.075 7 C -0.091 4.091 8 C 0.545 3.455 9 O -0.567 6.567 10 N -0.685 5.685 11 C 0.114 3.886 12 C 0.447 3.553 13 O -0.610 6.610 14 N -0.575 5.575 15 C -0.330 4.330 16 H 0.069 0.931 17 C -0.005 4.005 18 N -0.921 5.921 19 Si 0.954 3.046 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.235 1.235 23 C 0.002 3.998 24 N 0.040 4.960 25 O -0.157 6.157 26 O -0.157 6.157 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.196 0.804 31 H 0.205 0.795 32 H 0.171 0.829 33 H 0.420 0.580 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.392 0.608 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.389 -20.062 0.028 30.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.093 5.907 3 C -0.173 4.173 4 C -0.110 4.110 5 C -0.063 4.063 6 C -0.097 4.097 7 C -0.096 4.096 8 C 0.331 3.669 9 O -0.448 6.448 10 N -0.340 5.340 11 C -0.013 4.013 12 C 0.234 3.766 13 O -0.496 6.496 14 N -0.215 5.215 15 C -0.459 4.459 16 H 0.087 0.913 17 C -0.206 4.206 18 N -0.561 5.561 19 Si 0.775 3.225 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.159 1.159 23 C -0.086 4.086 24 N 0.568 4.432 25 O -0.379 6.379 26 O -0.379 6.379 27 H 0.132 0.868 28 H 0.151 0.849 29 H 0.132 0.868 30 H 0.213 0.787 31 H 0.222 0.778 32 H 0.188 0.812 33 H 0.261 0.739 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.227 0.773 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.227 -20.540 0.034 30.265 hybrid contribution 0.957 1.049 0.002 1.420 sum -21.271 -19.491 0.035 28.850 Atomic orbital electron populations 1.24030 0.87518 1.09900 1.08355 1.86615 1.14234 0.99237 1.90663 1.21671 0.92054 1.01062 1.02562 1.22016 0.99322 0.92044 0.97605 1.21968 0.96551 0.96410 0.91340 1.21865 0.92028 0.99871 0.95944 1.19596 0.94545 0.90675 1.04799 1.18403 0.88645 0.82763 0.77046 1.90891 1.49203 1.53234 1.51422 1.45408 1.09370 1.06416 1.72757 1.20998 0.83739 0.90948 1.05603 1.20225 0.83861 0.89660 0.82825 1.90513 1.34318 1.68173 1.56568 1.41929 1.07246 1.06447 1.65859 1.19035 0.95250 0.80845 1.50795 0.91327 1.26018 1.02079 0.96771 0.95705 1.69767 1.28197 1.09186 1.48919 0.85501 0.77484 0.79471 0.80062 1.18147 1.19732 1.15892 1.20484 0.86424 0.87472 1.14226 1.43437 1.00262 0.99646 0.99899 1.94501 1.61351 1.60745 1.21325 1.94498 1.61957 1.60825 1.20614 0.86789 0.84884 0.86793 0.78729 0.77819 0.81162 0.73942 0.87536 0.87434 0.77271 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.36 9.15 113.37 1.04 0.68 16 2 S -0.15 -2.59 21.97 -56.49 -1.24 -3.83 16 3 C -0.06 -1.09 6.11 22.58 0.14 -0.95 16 4 C -0.09 -0.69 9.36 22.46 0.21 -0.48 16 5 C -0.04 -0.29 10.02 22.21 0.22 -0.07 16 6 C -0.08 -1.12 9.54 22.55 0.22 -0.90 16 7 C -0.09 -2.30 5.87 -20.10 -0.12 -2.42 16 8 C 0.54 17.53 7.77 86.79 0.67 18.21 16 9 O -0.57 -22.70 14.44 14.75 0.21 -22.49 16 10 N -0.69 -20.71 5.48 -469.68 -2.57 -23.28 16 11 C 0.11 3.74 6.15 85.63 0.53 4.27 16 12 C 0.45 18.80 7.85 87.66 0.69 19.48 16 13 O -0.61 -29.54 15.24 -3.06 -0.05 -29.58 16 14 N -0.58 -25.90 5.09 -306.98 -1.56 -27.46 16 15 C -0.33 -18.28 10.16 84.04 0.85 -17.43 16 16 H 0.07 4.45 7.39 -2.91 -0.02 4.43 16 17 C -0.01 -0.27 5.50 84.93 0.47 0.20 16 18 N -0.92 -53.14 13.96 21.67 0.30 -52.84 16 19 Si 0.95 37.91 27.74 68.60 1.90 39.81 16 20 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 22 H -0.24 -8.09 6.52 99.48 0.65 -7.45 16 23 C 0.00 0.06 6.16 36.78 0.23 0.29 16 24 N 0.04 1.41 1.82 -45.48 -0.08 1.33 16 25 O -0.16 -6.02 18.91 22.56 0.43 -5.59 16 26 O -0.16 -6.00 18.94 22.43 0.42 -5.57 16 27 H 0.11 -0.12 7.74 -2.39 -0.02 -0.13 16 28 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.11 -0.12 7.75 -2.39 -0.02 -0.13 16 30 H 0.20 -0.22 5.86 -2.91 -0.02 -0.24 16 31 H 0.20 -0.53 8.06 -2.91 -0.02 -0.56 16 32 H 0.17 2.03 6.40 -2.91 -0.02 2.02 16 33 H 0.42 11.53 5.47 -92.71 -0.51 11.03 16 34 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 35 H 0.11 3.25 8.14 -2.39 -0.02 3.24 16 36 H 0.39 15.00 5.76 -92.71 -0.53 14.46 16 37 H 0.28 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -86.69 345.11 2.98 -83.70 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.08 Total: 24.93 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 5.14 Total: 20.87 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -3.92 Total: -102.25 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: 1.02 Total: -63.24 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -1.24 Total: -3.83 kcal Total: -86.69 2.98 -83.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344120543.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.976 kcal (2) G-P(sol) polarization free energy of solvation -86.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds