Wall clock time and date at job start Tue Mar 31 2020 22:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42107 * 109.46848 * 2 1 4 4 C 1.81402 * 103.00369 * 116.38975 * 2 1 3 5 5 C 1.53002 * 115.54553 * 294.34982 * 4 2 1 6 6 N 1.46496 * 109.47103 * 271.03887 * 5 4 2 7 7 C 1.34780 * 119.99616 * 185.01546 * 6 5 4 8 8 O 1.21549 * 120.00340 * 354.97126 * 7 6 5 9 9 C 1.47863 * 119.99496 * 174.96845 * 7 6 5 10 10 C 1.39672 * 120.10515 * 5.27584 * 9 7 6 11 11 C 1.38036 * 120.04322 * 179.97438 * 10 9 7 12 12 C 1.38190 * 120.24233 * 359.76021 * 11 10 9 13 13 C 1.39180 * 120.19630 * 0.51651 * 12 11 10 14 14 S 1.76203 * 120.01497 * 179.73807 * 13 12 11 15 15 C 1.76196 * 100.00176 * 264.78347 * 14 13 12 16 16 H 1.08010 * 120.00113 * 5.01877 * 15 14 13 17 17 C 1.38729 * 120.00191 * 185.01460 * 15 14 13 18 18 N 1.31625 * 119.99911 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99910 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46875 * 90.00054 * 19 17 15 21 21 H 1.48506 * 109.46987 * 209.99669 * 19 17 15 22 22 H 1.48494 * 109.47503 * 330.00026 * 19 17 15 23 23 C 1.38870 * 119.96088 * 359.46396 * 13 12 11 24 24 C 1.52992 * 117.51656 * 80.04968 * 4 2 1 25 25 C 1.52999 * 60.00170 * 107.48371 * 24 4 2 26 26 H 1.09000 * 109.47190 * 308.81690 * 1 2 3 27 27 H 1.08998 * 109.47569 * 68.82198 * 1 2 3 28 28 H 1.09003 * 109.47216 * 188.81808 * 1 2 3 29 29 H 1.09000 * 109.46649 * 151.04174 * 5 4 2 30 30 H 1.08997 * 109.47260 * 31.04715 * 5 4 2 31 31 H 0.96993 * 120.00357 * 5.02524 * 6 5 4 32 32 H 1.08000 * 119.97857 * 359.97128 * 10 9 7 33 33 H 1.08002 * 119.88676 * 180.02562 * 11 10 9 34 34 H 1.08002 * 119.90187 * 180.27817 * 12 11 10 35 35 H 0.97001 * 119.99772 * 180.02562 * 18 17 15 36 36 H 1.08008 * 120.11956 * 180.24671 * 23 13 12 37 37 H 1.09004 * 117.49533 * 214.97195 * 24 4 2 38 38 H 1.08994 * 117.50184 * 359.97438 * 24 4 2 39 39 H 1.08997 * 117.49939 * 252.51694 * 25 24 4 40 40 H 1.09003 * 117.50181 * 107.48339 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2221 -0.7856 1.5833 5 6 1.8160 -0.0017 2.8329 6 7 2.9028 0.9025 3.2167 7 6 2.8104 1.6235 4.3517 8 8 1.7885 1.5936 5.0093 9 6 3.9522 2.4508 4.7970 10 6 5.0849 2.5743 3.9893 11 6 6.1499 3.3474 4.4060 12 6 6.0990 4.0059 5.6198 13 6 4.9776 3.8853 6.4353 14 16 4.9207 4.7215 7.9852 15 6 5.4740 3.4311 9.0496 16 1 5.8031 2.4907 8.6325 17 6 5.4871 3.6228 10.4235 18 7 5.0856 4.7686 10.9319 19 14 6.0744 2.2549 11.5520 20 1 7.5375 2.3867 11.7695 21 1 5.3694 2.3516 12.8554 22 1 5.7833 0.9392 10.9281 23 6 3.9013 3.1100 6.0241 24 6 2.1527 -2.3123 1.6535 25 6 3.5107 -1.6076 1.6527 26 1 -0.3633 0.6442 0.8007 27 1 -0.3634 0.3712 -0.9582 28 1 -0.3634 -1.0155 0.1575 29 1 1.6162 -0.6965 3.6486 30 1 0.9178 0.5786 2.6218 31 1 3.6888 0.9825 2.6541 32 1 5.1277 2.0646 3.0381 33 1 7.0244 3.4415 3.7792 34 1 6.9336 4.6130 5.9384 35 1 5.0951 4.9028 11.8926 36 1 3.0281 3.0178 6.6530 37 1 1.8178 -2.7584 2.5900 38 1 1.8613 -2.8451 0.7483 39 1 4.1130 -1.6765 0.7468 40 1 4.0692 -1.5898 2.5886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442933506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:01 Heat of formation + Delta-G solvation = -20.879285 kcal Electronic energy + Delta-G solvation = -23682.946078 eV Core-core repulsion = 20102.510795 eV Total energy + Delta-G solvation = -3580.435283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02177 -38.30534 -37.47697 -36.06237 -34.14597 -32.49706 -31.00219 -30.49905 -29.38860 -27.45685 -25.55968 -23.54905 -22.97282 -22.27387 -21.52678 -20.31886 -18.46108 -17.70836 -17.34610 -16.74730 -16.18833 -15.86475 -15.26506 -14.98926 -14.92966 -14.84534 -14.77327 -14.26895 -14.16113 -13.64697 -13.46107 -13.32922 -13.06736 -12.91022 -12.79515 -12.38818 -12.19383 -12.07119 -11.62791 -11.26097 -11.14251 -11.13053 -11.08283 -11.03104 -10.69420 -10.36111 -9.96141 -9.75046 -9.19396 -9.15121 -8.98973 -8.71947 -8.54852 -8.00379 -6.69585 -6.27416 -4.01144 1.14073 1.19722 1.70161 2.10969 2.76290 3.06256 3.19323 3.22171 3.26970 3.30088 3.48839 3.57306 4.08873 4.11868 4.18233 4.28576 4.42720 4.74890 4.83872 4.86536 5.07174 5.08494 5.08770 5.15616 5.25445 5.28293 5.34401 5.42158 5.49243 5.57212 5.58453 5.76955 5.90290 6.01974 6.28402 6.33832 6.62212 6.67279 6.95691 7.22221 7.50946 7.58424 8.29447 8.33739 9.18150 10.79375 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.002465 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.893096 B =11356.974682 C =11839.209994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.490 4.490 2 S 1.281 4.719 3 O -0.837 6.837 4 C -0.487 4.487 5 C 0.169 3.831 6 N -0.727 5.727 7 C 0.564 3.436 8 O -0.538 6.538 9 C -0.154 4.154 10 C -0.088 4.088 11 C -0.140 4.140 12 C -0.055 4.055 13 C -0.107 4.107 14 S -0.035 6.035 15 C -0.519 4.519 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.870 5.870 19 Si 0.921 3.079 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.271 1.271 23 C -0.019 4.019 24 C -0.114 4.114 25 C -0.125 4.125 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.402 0.598 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.270 0.730 36 H 0.138 0.862 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -16.721 -25.998 31.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 1.477 4.523 3 O -0.832 6.832 4 C -0.584 4.584 5 C 0.044 3.956 6 N -0.380 5.380 7 C 0.353 3.647 8 O -0.415 6.415 9 C -0.159 4.159 10 C -0.107 4.107 11 C -0.160 4.160 12 C -0.076 4.076 13 C -0.218 4.218 14 S 0.200 5.800 15 C -0.666 4.666 16 H 0.093 0.907 17 C -0.136 4.136 18 N -0.506 5.506 19 Si 0.747 3.253 20 H -0.201 1.201 21 H -0.206 1.206 22 H -0.196 1.196 23 C -0.041 4.041 24 C -0.153 4.153 25 C -0.163 4.163 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.238 0.762 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.079 0.921 36 H 0.156 0.844 37 H 0.122 0.878 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.340 -15.163 -25.705 30.158 hybrid contribution 0.049 -0.829 1.866 2.042 sum -4.292 -15.992 -23.840 29.026 Atomic orbital electron populations 1.27621 1.21399 1.08191 1.07536 1.70160 0.86941 0.99045 0.96120 1.93170 1.73415 1.36562 1.80093 1.29434 1.12106 1.02283 1.14534 1.20617 0.89648 0.91391 0.93940 1.45841 1.22541 1.44635 1.24985 1.18440 0.87423 0.78896 0.79956 1.90760 1.30823 1.64635 1.55313 1.19838 0.94987 1.03317 0.97769 1.21145 0.93033 0.98348 0.98186 1.21057 0.98576 0.99144 0.97240 1.21956 0.96954 0.95881 0.92813 1.22835 0.95021 1.01061 1.02850 1.83608 1.87518 1.17910 0.90967 1.22836 1.49512 1.01619 0.92679 0.90654 1.25008 0.94839 0.96614 0.97165 1.69991 1.44297 1.23189 1.13091 0.86114 0.78772 0.81110 0.79279 1.20147 1.20644 1.19604 1.21933 0.98009 0.91082 0.93036 1.22814 0.99713 0.88115 1.04613 1.22791 0.89413 0.99474 1.04654 0.89707 0.87479 0.86824 0.90867 0.92204 0.76222 0.86587 0.85795 0.85014 0.92061 0.84388 0.87836 0.86806 0.87212 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -2.59 10.56 101.05 1.07 -1.52 16 2 S 1.28 7.36 13.66 -107.50 -1.47 5.89 16 3 O -0.84 -10.87 18.14 -35.23 -0.64 -11.51 16 4 C -0.49 -3.13 2.05 -90.62 -0.19 -3.32 16 5 C 0.17 1.91 5.70 -4.04 -0.02 1.89 16 6 N -0.73 -10.05 5.37 -61.25 -0.33 -10.38 16 7 C 0.56 10.28 7.76 -12.32 -0.10 10.19 16 8 O -0.54 -11.64 16.36 5.32 0.09 -11.55 16 9 C -0.15 -2.88 5.87 -105.00 -0.62 -3.50 16 10 C -0.09 -1.37 9.54 -39.12 -0.37 -1.74 16 11 C -0.14 -2.20 10.02 -39.67 -0.40 -2.60 16 12 C -0.05 -1.04 9.79 -39.25 -0.38 -1.43 16 13 C -0.11 -2.41 5.45 -39.00 -0.21 -2.62 16 14 S -0.03 -0.92 21.41 -107.50 -2.30 -3.22 16 15 C -0.52 -14.98 9.46 30.91 0.29 -14.69 16 16 H 0.08 2.15 7.79 -52.48 -0.41 1.75 16 17 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 18 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 19 Si 0.92 21.80 29.55 -169.99 -5.02 16.77 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C -0.02 -0.41 9.34 -38.92 -0.36 -0.78 16 24 C -0.11 -0.37 9.94 -26.74 -0.27 -0.64 16 25 C -0.12 -0.58 9.63 -26.73 -0.26 -0.83 16 26 H 0.08 0.68 7.53 -51.92 -0.39 0.29 16 27 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.11 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 30 H 0.06 0.76 7.28 -51.93 -0.38 0.38 16 31 H 0.40 4.81 6.32 -40.82 -0.26 4.55 16 32 H 0.12 1.41 6.42 -52.49 -0.34 1.07 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 2.35 8.06 -52.49 -0.42 1.93 16 35 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.14 3.24 7.66 -52.48 -0.40 2.84 16 37 H 0.10 0.41 8.04 -51.93 -0.42 0.00 16 38 H 0.11 -0.02 8.14 -51.93 -0.42 -0.44 16 39 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -39.87 373.68 -10.32 -50.19 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.10 Total: 2.98 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -1.91 Total: -19.60 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.40 Total: -35.56 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.55 Total: -23.07 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -3.77 Total: 2.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.87 -10.32 -50.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442933506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.307 kcal (2) G-P(sol) polarization free energy of solvation -39.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds