Wall clock time and date at job start Tue Mar 31 2020 22:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42107 * 109.46848 * 2 1 4 4 C 1.81402 * 103.00369 * 116.38975 * 2 1 3 5 5 C 1.53002 * 115.54553 * 294.34982 * 4 2 1 6 6 N 1.46496 * 109.47103 * 271.03887 * 5 4 2 7 7 C 1.34780 * 119.99616 * 185.01546 * 6 5 4 8 8 O 1.21549 * 120.00340 * 354.97126 * 7 6 5 9 9 C 1.47863 * 119.99496 * 174.96845 * 7 6 5 10 10 C 1.39672 * 120.10515 * 5.27584 * 9 7 6 11 11 C 1.38036 * 120.04322 * 179.97438 * 10 9 7 12 12 C 1.38190 * 120.24233 * 359.76021 * 11 10 9 13 13 C 1.39180 * 120.19630 * 0.51651 * 12 11 10 14 14 S 1.76203 * 120.01497 * 179.73807 * 13 12 11 15 15 C 1.76196 * 100.00176 * 264.78347 * 14 13 12 16 16 H 1.08010 * 120.00113 * 5.01877 * 15 14 13 17 17 C 1.38729 * 120.00191 * 185.01460 * 15 14 13 18 18 N 1.31625 * 119.99911 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99910 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46875 * 90.00054 * 19 17 15 21 21 H 1.48506 * 109.46987 * 209.99669 * 19 17 15 22 22 H 1.48494 * 109.47503 * 330.00026 * 19 17 15 23 23 C 1.38870 * 119.96088 * 359.46396 * 13 12 11 24 24 C 1.52992 * 117.51656 * 80.04968 * 4 2 1 25 25 C 1.52999 * 60.00170 * 107.48371 * 24 4 2 26 26 H 1.09000 * 109.47190 * 308.81690 * 1 2 3 27 27 H 1.08998 * 109.47569 * 68.82198 * 1 2 3 28 28 H 1.09003 * 109.47216 * 188.81808 * 1 2 3 29 29 H 1.09000 * 109.46649 * 151.04174 * 5 4 2 30 30 H 1.08997 * 109.47260 * 31.04715 * 5 4 2 31 31 H 0.96993 * 120.00357 * 5.02524 * 6 5 4 32 32 H 1.08000 * 119.97857 * 359.97128 * 10 9 7 33 33 H 1.08002 * 119.88676 * 180.02562 * 11 10 9 34 34 H 1.08002 * 119.90187 * 180.27817 * 12 11 10 35 35 H 0.97001 * 119.99772 * 180.02562 * 18 17 15 36 36 H 1.08008 * 120.11956 * 180.24671 * 23 13 12 37 37 H 1.09004 * 117.49533 * 214.97195 * 24 4 2 38 38 H 1.08994 * 117.50184 * 359.97438 * 24 4 2 39 39 H 1.08997 * 117.49939 * 252.51694 * 25 24 4 40 40 H 1.09003 * 117.50181 * 107.48339 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2221 -0.7856 1.5833 5 6 1.8160 -0.0017 2.8329 6 7 2.9028 0.9025 3.2167 7 6 2.8104 1.6235 4.3517 8 8 1.7885 1.5936 5.0093 9 6 3.9522 2.4508 4.7970 10 6 5.0849 2.5743 3.9893 11 6 6.1499 3.3474 4.4060 12 6 6.0990 4.0059 5.6198 13 6 4.9776 3.8853 6.4353 14 16 4.9207 4.7215 7.9852 15 6 5.4740 3.4311 9.0496 16 1 5.8031 2.4907 8.6325 17 6 5.4871 3.6228 10.4235 18 7 5.0856 4.7686 10.9319 19 14 6.0744 2.2549 11.5520 20 1 7.5375 2.3867 11.7695 21 1 5.3694 2.3516 12.8554 22 1 5.7833 0.9392 10.9281 23 6 3.9013 3.1100 6.0241 24 6 2.1527 -2.3123 1.6535 25 6 3.5107 -1.6076 1.6527 26 1 -0.3633 0.6442 0.8007 27 1 -0.3634 0.3712 -0.9582 28 1 -0.3634 -1.0155 0.1575 29 1 1.6162 -0.6965 3.6486 30 1 0.9178 0.5786 2.6218 31 1 3.6888 0.9825 2.6541 32 1 5.1277 2.0646 3.0381 33 1 7.0244 3.4415 3.7792 34 1 6.9336 4.6130 5.9384 35 1 5.0951 4.9028 11.8926 36 1 3.0281 3.0178 6.6530 37 1 1.8178 -2.7584 2.5900 38 1 1.8613 -2.8451 0.7483 39 1 4.1130 -1.6765 0.7468 40 1 4.0692 -1.5898 2.5886 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000442933506.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:01 Heat of formation + Delta-G solvation = -50.766429 kcal Electronic energy + Delta-G solvation = -23684.242081 eV Core-core repulsion = 20102.510795 eV Total energy + Delta-G solvation = -3581.731287 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40175 -39.44471 -38.45782 -36.83799 -35.31572 -34.69511 -32.42876 -32.00483 -29.87182 -28.42330 -27.78625 -24.87431 -23.72481 -23.32986 -22.26470 -21.71013 -20.10000 -19.21896 -18.17843 -17.54024 -17.40439 -17.04281 -16.97389 -16.73291 -16.18204 -15.82037 -15.75061 -15.45869 -15.18256 -14.81182 -14.71912 -14.60871 -14.23959 -13.90220 -13.73883 -13.43317 -13.30447 -13.14898 -12.99088 -12.91318 -12.75273 -12.46085 -12.30464 -11.82732 -11.81189 -11.66424 -11.27811 -11.13372 -10.92332 -10.83304 -10.43209 -10.01242 -9.78942 -9.30997 -8.86130 -8.43172 -6.24168 -0.29922 0.15717 0.68919 1.25606 1.34934 1.42723 1.57322 1.61596 1.67529 1.91064 2.20182 2.57792 2.69290 2.89880 3.06131 3.36601 3.50133 3.57012 3.63302 3.84538 3.91087 4.08557 4.24784 4.26486 4.35266 4.36563 4.44899 4.50542 4.60199 4.75764 4.82176 4.87386 5.10841 5.11939 5.15192 5.15616 5.22757 5.33782 5.34153 5.40518 5.76038 6.11736 6.27054 6.93914 6.96767 8.64290 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.002465 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.893096 B =11356.974682 C =11839.209994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.493 4.493 2 S 1.347 4.653 3 O -0.913 6.913 4 C -0.506 4.506 5 C 0.161 3.839 6 N -0.706 5.706 7 C 0.558 3.442 8 O -0.585 6.585 9 C -0.161 4.161 10 C -0.066 4.066 11 C -0.118 4.118 12 C -0.059 4.059 13 C -0.127 4.127 14 S -0.093 6.093 15 C -0.537 4.537 16 H 0.067 0.933 17 C 0.019 3.981 18 N -0.907 5.907 19 Si 0.995 3.005 20 H -0.260 1.260 21 H -0.271 1.271 22 H -0.269 1.269 23 C -0.045 4.045 24 C -0.089 4.089 25 C -0.124 4.124 26 H 0.052 0.948 27 H 0.118 0.882 28 H 0.148 0.852 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.413 0.587 32 H 0.163 0.837 33 H 0.179 0.821 34 H 0.141 0.859 35 H 0.275 0.725 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.160 0.840 39 H 0.143 0.857 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -20.168 -29.325 35.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.545 4.455 3 O -0.909 6.909 4 C -0.602 4.602 5 C 0.037 3.963 6 N -0.358 5.358 7 C 0.346 3.654 8 O -0.466 6.466 9 C -0.165 4.165 10 C -0.085 4.085 11 C -0.137 4.137 12 C -0.080 4.080 13 C -0.238 4.238 14 S 0.142 5.858 15 C -0.684 4.684 16 H 0.085 0.915 17 C -0.187 4.187 18 N -0.543 5.543 19 Si 0.816 3.184 20 H -0.184 1.184 21 H -0.196 1.196 22 H -0.193 1.193 23 C -0.067 4.067 24 C -0.127 4.127 25 C -0.163 4.163 26 H 0.072 0.928 27 H 0.136 0.864 28 H 0.166 0.834 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.251 0.749 32 H 0.180 0.820 33 H 0.196 0.804 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.178 0.822 39 H 0.161 0.839 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.525 -18.614 -29.090 34.627 hybrid contribution -0.587 0.155 2.737 2.804 sum -3.112 -18.459 -26.352 32.324 Atomic orbital electron populations 1.27686 1.20743 1.09775 1.06984 1.69166 0.86028 0.95931 0.94388 1.93032 1.75716 1.40263 1.81872 1.29339 1.15217 1.04012 1.11678 1.20803 0.88415 0.90955 0.96164 1.45787 1.23427 1.43380 1.23249 1.18522 0.86722 0.79238 0.80868 1.90732 1.32466 1.66359 1.57087 1.19948 0.96556 1.03029 0.97013 1.21645 0.91104 0.96927 0.98816 1.21559 0.99909 0.96459 0.95758 1.22112 0.95782 0.96400 0.93719 1.22518 0.97204 1.02867 1.01196 1.83503 1.88029 1.19649 0.94658 1.23054 1.50015 1.01622 0.93695 0.91452 1.26054 0.94657 0.99295 0.98657 1.70114 1.45221 1.25249 1.13699 0.85006 0.78961 0.77439 0.76947 1.18447 1.19626 1.19348 1.21611 0.97135 0.93261 0.94671 1.23125 0.97940 0.85172 1.06499 1.23031 0.89554 0.98200 1.05498 0.92836 0.86381 0.83385 0.91662 0.94185 0.74864 0.81974 0.80406 0.84114 0.91617 0.88013 0.88546 0.82180 0.83872 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -4.25 10.56 113.37 1.20 -3.05 16 2 S 1.35 12.31 13.66 -56.49 -0.77 11.53 16 3 O -0.91 -22.80 18.14 -148.98 -2.70 -25.50 16 4 C -0.51 -5.22 2.05 -10.80 -0.02 -5.24 16 5 C 0.16 3.60 5.70 86.38 0.49 4.09 16 6 N -0.71 -19.11 5.37 -465.96 -2.50 -21.61 16 7 C 0.56 20.91 7.76 86.79 0.67 21.58 16 8 O -0.58 -27.04 16.36 -3.87 -0.06 -27.10 16 9 C -0.16 -6.05 5.87 -20.11 -0.12 -6.17 16 10 C -0.07 -1.86 9.54 22.57 0.22 -1.65 16 11 C -0.12 -3.24 10.02 22.21 0.22 -3.01 16 12 C -0.06 -2.20 9.79 22.48 0.22 -1.98 16 13 C -0.13 -5.96 5.45 22.65 0.12 -5.83 16 14 S -0.09 -5.29 21.41 -56.49 -1.21 -6.50 16 15 C -0.54 -32.37 9.46 67.94 0.64 -31.73 16 16 H 0.07 4.02 7.79 -2.91 -0.02 4.00 16 17 C 0.02 1.09 5.49 84.84 0.47 1.55 16 18 N -0.91 -55.84 13.22 21.64 0.29 -55.56 16 19 Si 1.00 45.45 29.55 68.60 2.03 47.48 16 20 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C -0.04 -2.08 9.34 22.70 0.21 -1.87 16 24 C -0.09 -0.20 9.94 30.59 0.30 0.10 16 25 C -0.12 -0.66 9.63 30.59 0.29 -0.37 16 26 H 0.05 0.85 7.53 -2.39 -0.02 0.83 16 27 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.07 1.56 7.88 -2.39 -0.02 1.54 16 30 H 0.04 1.06 7.28 -2.39 -0.02 1.04 16 31 H 0.41 8.95 6.32 -92.71 -0.59 8.36 16 32 H 0.16 3.09 6.42 -2.91 -0.02 3.07 16 33 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.14 4.91 8.06 -2.91 -0.02 4.88 16 35 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.10 5.34 7.66 -2.91 -0.02 5.32 16 37 H 0.10 0.45 8.04 -2.39 -0.02 0.43 16 38 H 0.16 -1.07 8.14 -2.39 -0.02 -1.09 16 39 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -96.33 373.68 0.47 -95.86 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.48 Total: 14.97 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 4.92 Total: -33.57 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.21 Total: -77.17 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -2.77 Total: -52.60 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Atomic # 16 Polarization: 7.01 SS G_CDS: -1.98 Total: 5.03 kcal Total: -96.33 0.47 -95.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442933506.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.089 kcal (2) G-P(sol) polarization free energy of solvation -96.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds