Wall clock time and date at job start Tue Mar 31 2020 22:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48497 * 109.47074 * 239.99977 * 3 2 1 5 5 H 1.48500 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47265 * 119.99977 * 3 2 1 7 7 C 1.37876 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99952 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00267 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.49772 * 299.93818 * 9 7 2 11 11 C 1.53046 * 109.49743 * 59.99562 * 9 7 2 12 12 C 1.53032 * 109.53716 * 181.31926 * 11 9 7 13 13 C 1.53195 * 109.31456 * 298.63569 * 12 11 9 14 14 N 1.46926 * 108.77262 * 54.63952 * 13 12 11 15 15 S 1.65599 * 120.63234 * 126.37199 * 14 13 12 16 16 O 1.42099 * 106.40098 * 336.45709 * 15 14 13 17 17 O 1.42097 * 106.40388 * 203.53696 * 15 14 13 18 18 C 1.76204 * 107.21928 * 89.99482 * 15 14 13 19 19 C 1.38285 * 119.98256 * 115.00341 * 18 15 14 20 20 C 1.38208 * 120.14068 * 180.25736 * 19 18 15 21 21 C 1.38287 * 120.14272 * 359.47033 * 20 19 18 22 22 C 1.38503 * 120.02668 * 0.56048 * 21 20 19 23 23 C 1.38501 * 119.98434 * 295.02153 * 18 15 14 24 24 O 1.36499 * 131.54070 * 0.04556 * 23 18 15 25 25 C 1.43984 * 105.48333 * 197.23943 * 24 23 18 26 26 O 1.36502 * 131.53530 * 179.66568 * 22 21 20 27 27 C 1.46928 * 118.73697 * 306.64130 * 14 13 12 28 28 H 0.96999 * 119.99577 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.45228 * 61.29963 * 11 9 7 30 30 H 1.08999 * 109.44948 * 301.33822 * 11 9 7 31 31 H 1.09004 * 109.49617 * 178.68980 * 12 11 9 32 32 H 1.08999 * 109.50379 * 58.58850 * 12 11 9 33 33 H 1.09000 * 109.58949 * 294.85136 * 13 12 11 34 34 H 1.08999 * 109.58777 * 174.42504 * 13 12 11 35 35 H 1.08002 * 119.92717 * 359.97178 * 19 18 15 36 36 H 1.08001 * 119.92655 * 179.72349 * 20 19 18 37 37 H 1.07997 * 119.98417 * 180.23602 * 21 20 19 38 38 H 1.09008 * 110.56921 * 91.44074 * 25 24 23 39 39 H 1.08998 * 110.57329 * 214.15792 * 25 24 23 40 40 H 1.09004 * 109.58833 * 173.14997 * 27 14 13 41 41 H 1.09007 * 109.58703 * 293.57001 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5577 0.8908 11 6 0.3714 -2.5812 -1.2491 12 6 -0.4190 -3.8915 -1.2336 13 6 0.5571 -5.0722 -1.2511 14 7 1.4998 -4.9229 -0.1341 15 16 1.7169 -6.1499 0.9566 16 8 0.5358 -6.9388 0.9133 17 8 2.2057 -5.5471 2.1469 18 6 3.0180 -7.1681 0.3440 19 6 4.2072 -7.2651 1.0430 20 6 5.2318 -8.0586 0.5628 21 6 5.0682 -8.7676 -0.6132 22 6 3.8801 -8.6747 -1.3189 23 6 2.8493 -7.8707 -0.8377 24 8 1.7965 -7.9466 -1.7032 25 6 2.0393 -9.1199 -2.5017 26 8 3.4729 -9.2541 -2.4859 27 6 2.2418 -3.6619 0.0003 28 1 -0.4849 0.8401 0.0004 29 1 1.0004 -2.5469 -2.1387 30 1 -0.3211 -1.7395 -1.2614 31 1 -1.0626 -3.9386 -2.1121 32 1 -1.0295 -3.9375 -0.3318 33 1 1.1051 -5.0794 -2.1933 34 1 0.0042 -6.0050 -1.1404 35 1 4.3372 -6.7159 1.9639 36 1 6.1608 -8.1282 1.1093 37 1 5.8692 -9.3898 -0.9841 38 1 1.5678 -9.9937 -2.0518 39 1 1.6775 -8.9722 -3.5193 40 1 2.8003 -3.6645 0.9364 41 1 2.9301 -3.5517 -0.8378 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807556.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:44 Heat of formation + Delta-G solvation = -125.568025 kcal Electronic energy + Delta-G solvation = -28495.953291 eV Core-core repulsion = 24468.225493 eV Total energy + Delta-G solvation = -4027.727798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.34165 -39.34794 -39.01219 -38.42019 -37.48044 -37.03626 -35.20524 -32.77169 -32.11018 -31.89528 -31.12608 -27.03889 -26.88343 -25.27543 -24.60843 -24.15120 -23.36467 -21.21997 -20.31525 -19.28556 -19.13646 -18.79727 -18.56094 -18.04914 -17.62372 -16.94675 -16.83215 -16.50895 -15.75039 -15.46667 -15.36746 -15.20792 -14.92179 -14.83676 -14.48005 -14.37328 -14.15043 -14.02301 -13.84762 -13.67985 -13.36413 -13.28616 -13.14012 -12.92471 -12.76497 -12.69085 -12.53943 -12.08896 -11.88150 -11.86611 -11.79071 -11.57300 -11.09294 -10.77036 -10.47105 -10.39422 -9.81212 -9.26716 -8.04783 -6.19997 -0.78958 -0.41702 -0.03931 1.45829 1.47531 1.54601 1.57026 1.81107 2.27007 2.33052 2.47007 2.62738 3.12771 3.22144 3.40654 3.70806 3.79446 3.83861 4.04965 4.10882 4.13442 4.24204 4.29051 4.35010 4.54951 4.57442 4.59434 4.72991 4.79741 4.85447 4.94653 5.00750 5.06780 5.10818 5.26832 5.29678 5.34297 5.53194 5.65644 5.71097 5.89397 5.98911 6.17204 6.39082 6.91035 7.47951 8.99288 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017187 B = 0.003732 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.753528 B = 7501.618104 C = 7860.873357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.035 3.965 10 H -0.010 1.010 11 C -0.102 4.102 12 C -0.127 4.127 13 C 0.129 3.871 14 N -0.993 5.993 15 S 2.694 3.306 16 O -0.980 6.980 17 O -0.980 6.980 18 C -0.669 4.669 19 C -0.034 4.034 20 C -0.115 4.115 21 C -0.043 4.043 22 C -0.001 4.001 23 C 0.113 3.887 24 O -0.317 6.317 25 C 0.201 3.799 26 O -0.311 6.311 27 C 0.136 3.864 28 H 0.260 0.740 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.163 0.837 36 H 0.190 0.810 37 H 0.178 0.822 38 H 0.109 0.891 39 H 0.171 0.829 40 H 0.077 0.923 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.446 -20.823 -5.340 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.015 3.985 10 H 0.008 0.992 11 C -0.140 4.140 12 C -0.166 4.166 13 C 0.005 3.995 14 N -0.832 5.832 15 S 2.788 3.212 16 O -0.970 6.970 17 O -0.970 6.970 18 C -0.758 4.758 19 C -0.053 4.053 20 C -0.133 4.133 21 C -0.061 4.061 22 C -0.046 4.046 23 C 0.065 3.935 24 O -0.232 6.232 25 C 0.091 3.909 26 O -0.228 6.228 27 C 0.012 3.988 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.181 0.819 36 H 0.207 0.793 37 H 0.196 0.804 38 H 0.126 0.874 39 H 0.188 0.812 40 H 0.095 0.905 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.730 -20.828 -4.808 23.090 hybrid contribution 0.162 0.945 -0.419 1.047 sum 8.892 -19.883 -5.228 22.399 Atomic orbital electron populations 1.70030 1.07290 1.27160 1.51099 1.25732 0.95630 1.02404 0.94711 0.85638 0.78336 0.78911 0.78901 1.19264 1.21298 1.19796 1.21446 0.93385 0.91499 1.50935 0.92035 1.18841 0.93505 0.92004 0.94115 0.99225 1.21390 0.98801 0.96227 0.97625 1.21905 0.97788 0.95467 1.01452 1.21496 0.90262 0.99011 0.88753 1.57495 1.53881 1.27233 1.44592 1.01547 0.73829 0.72715 0.73089 1.93515 1.46336 1.70423 1.86743 1.93522 1.82177 1.76624 1.44691 1.29748 1.19638 1.21609 1.04833 1.21184 0.89580 0.95858 0.98668 1.21555 1.00400 0.95606 0.95742 1.20900 0.94410 0.98188 0.92605 1.20122 0.97202 0.98934 0.88363 1.19212 0.88072 0.96035 0.90151 1.87443 1.42454 1.47302 1.46011 1.26298 0.78180 0.86701 0.99705 1.87357 1.23568 1.76704 1.35159 1.21475 0.94242 0.81650 1.01443 0.93087 0.94178 0.91920 0.89686 0.94108 0.90178 0.88949 0.81942 0.79261 0.80418 0.87358 0.81228 0.90502 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 11.31 21.45 0.24 -52.97 16 2 C 0.01 0.78 5.30 84.65 0.45 1.22 16 3 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.53 -29.18 8.56 25.60 0.22 -28.96 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.04 1.81 2.24 -11.61 -0.03 1.78 16 10 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 11 C -0.10 -4.81 4.96 30.62 0.15 -4.66 16 12 C -0.13 -4.93 6.08 30.67 0.19 -4.75 16 13 C 0.13 4.46 6.19 86.36 0.53 4.99 16 14 N -0.99 -37.56 3.30 -513.84 -1.69 -39.26 16 15 S 2.69 98.01 5.66 -56.49 -0.32 97.69 16 16 O -0.98 -38.99 16.52 -128.00 -2.11 -41.10 16 17 O -0.98 -39.74 15.55 -128.00 -1.99 -41.73 16 18 C -0.67 -19.34 5.92 22.34 0.13 -19.21 16 19 C -0.03 -0.76 9.54 22.27 0.21 -0.55 16 20 C -0.11 -1.73 10.04 22.27 0.22 -1.51 16 21 C -0.04 -0.67 10.06 22.34 0.22 -0.44 16 22 C 0.00 -0.02 7.15 22.59 0.16 0.14 16 23 C 0.11 3.04 6.78 22.59 0.15 3.20 16 24 O -0.32 -8.07 11.03 -76.05 -0.84 -8.90 16 25 C 0.20 3.24 8.89 113.37 1.01 4.25 16 26 O -0.31 -6.18 11.40 -76.08 -0.87 -7.05 16 27 C 0.14 5.74 5.67 86.22 0.49 6.23 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 3.36 6.04 -2.39 -0.01 3.34 16 31 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.09 2.99 6.84 -2.39 -0.02 2.97 16 35 H 0.16 3.43 7.33 -2.91 -0.02 3.41 16 36 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.17 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 3.24 6.91 -2.38 -0.02 3.22 16 41 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 Total: -1.00 -74.38 347.44 -0.38 -74.76 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 1.06 Total: 11.43 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 4.12 Total: -38.25 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -1.45 Total: -92.22 kcal Atomic # 8 Polarization: -92.98 SS G_CDS: -5.81 Total: -98.79 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 98.01 SS G_CDS: -0.32 Total: 97.69 kcal Total: -74.38 -0.38 -74.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807556.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.805 kcal (2) G-P(sol) polarization free energy of solvation -74.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds