Wall clock time and date at job start Tue Mar 31 2020 22:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38753 * 120.79652 * 2 1 4 4 Br 1.89105 * 120.42882 * 0.02562 * 3 2 1 5 5 C 1.38281 * 119.14438 * 180.25549 * 3 2 1 6 6 N 1.31871 * 120.74711 * 359.76822 * 5 3 2 7 7 C 1.31853 * 121.74010 * 359.97438 * 6 5 3 8 8 C 1.38231 * 120.78464 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.41647 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.46847 * 105.50674 * 9 8 7 11 11 C 1.46901 * 110.99712 * 184.26651 * 10 9 8 12 12 C 1.53243 * 109.34210 * 187.25204 * 11 10 9 13 13 N 1.47082 * 108.51994 * 306.17238 * 12 11 10 14 14 C 1.36932 * 120.87966 * 231.18369 * 13 12 11 15 15 H 1.08007 * 119.99915 * 28.80670 * 14 13 12 16 16 C 1.38815 * 120.00112 * 208.53382 * 14 13 12 17 17 N 1.31615 * 119.99675 * 16.66861 * 16 14 13 18 18 Si 1.86806 * 119.99847 * 196.66862 * 16 14 13 19 19 H 1.48496 * 109.46762 * 94.98172 * 18 16 14 20 20 H 1.48496 * 109.46786 * 214.97832 * 18 16 14 21 21 H 1.48497 * 109.47082 * 334.98021 * 18 16 14 22 22 C 1.47074 * 118.23998 * 51.45125 * 13 12 11 23 23 C 1.46898 * 111.00097 * 308.56250 * 10 9 8 24 24 H 1.09002 * 109.46920 * 274.61502 * 1 2 3 25 25 H 1.08996 * 109.46972 * 34.61526 * 1 2 3 26 26 H 1.08998 * 109.47458 * 154.61809 * 1 2 3 27 27 H 1.07998 * 119.62218 * 179.75257 * 5 3 2 28 28 H 1.08004 * 119.60961 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.47026 * 345.50877 * 9 8 7 30 30 H 1.08997 * 109.47195 * 225.50663 * 9 8 7 31 31 H 1.09004 * 109.49835 * 67.29625 * 11 10 9 32 32 H 1.08997 * 109.49714 * 307.21334 * 11 10 9 33 33 H 1.08998 * 109.62986 * 186.45865 * 12 11 10 34 34 H 1.09002 * 109.78857 * 65.97308 * 12 11 10 35 35 H 0.97003 * 119.99796 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.62608 * 68.25360 * 22 13 12 37 37 H 1.08995 * 109.63042 * 188.83407 * 22 13 12 38 38 H 1.08996 * 109.49836 * 292.71198 * 23 10 9 39 39 H 1.08998 * 109.49123 * 52.76654 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2175 1.1919 0.0000 4 35 1.3072 2.8494 0.0007 5 6 3.5997 1.1520 -0.0054 6 7 4.2409 -0.0003 -0.0059 7 6 3.5984 -1.1517 -0.0008 8 6 2.2167 -1.1907 0.0058 9 6 1.4907 -2.5114 0.0121 10 7 0.9367 -2.7591 1.3499 11 6 0.3081 -4.0849 1.4220 12 6 -0.4120 -4.2327 2.7666 13 7 0.5451 -3.9387 3.8440 14 6 0.7144 -4.8063 4.8898 15 1 0.5441 -5.8633 4.7475 16 6 1.1103 -4.3280 6.1313 17 7 1.0086 -3.0447 6.4050 18 14 1.7872 -5.5059 7.4135 19 1 3.2703 -5.5186 7.3398 20 1 1.3626 -5.0630 8.7657 21 1 1.2670 -6.8724 7.1540 22 6 1.3113 -2.6854 3.7714 23 6 1.9678 -2.6014 2.3842 24 1 -0.3633 0.0827 1.0244 25 1 -0.3633 0.8457 -0.5838 26 1 -0.3634 -0.9284 -0.4405 27 1 4.1603 2.0751 -0.0095 28 1 4.1583 -2.0752 -0.0010 29 1 2.1864 -3.3096 -0.2466 30 1 0.6811 -2.4845 -0.7172 31 1 1.0735 -4.8558 1.3328 32 1 -0.4117 -4.1909 0.6104 33 1 -0.7822 -5.2523 2.8737 34 1 -1.2464 -3.5331 2.8172 35 1 1.2849 -2.7105 7.2728 36 1 0.6411 -1.8378 3.9146 37 1 2.0811 -2.6816 4.5431 38 1 2.7102 -3.3929 2.2816 39 1 2.4520 -1.6316 2.2701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596995708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:46 Heat of formation + Delta-G solvation = 69.800445 kcal Electronic energy + Delta-G solvation = -21875.908979 eV Core-core repulsion = 18672.474352 eV Total energy + Delta-G solvation = -3203.434627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 339.064 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.63861 -38.05179 -35.05964 -34.05024 -32.63021 -31.05635 -29.98993 -29.80862 -28.03585 -27.18003 -24.92103 -22.84686 -22.57126 -22.40145 -21.00632 -19.12100 -17.14066 -16.70759 -16.53251 -15.47732 -15.27197 -14.66068 -14.33264 -14.16650 -13.96733 -13.49710 -13.23536 -13.05020 -12.95152 -12.83024 -12.71772 -12.56734 -11.71867 -11.56869 -11.39217 -11.23051 -11.08894 -10.77808 -10.54619 -10.44438 -10.35635 -10.11260 -9.81842 -9.67702 -9.51538 -9.32997 -8.92832 -8.52366 -7.90020 -6.66744 -5.79802 -3.22951 0.77714 1.07756 1.42929 3.36660 3.43837 3.45179 3.51385 4.27597 4.38770 4.49264 4.55043 4.59201 4.74760 5.00422 5.28860 5.37440 5.40133 5.40568 5.53263 5.55899 5.74185 5.77567 5.85713 5.91390 6.08792 6.11282 6.18442 6.22761 6.29496 6.44894 6.50397 6.65314 6.89619 7.19326 7.48863 7.59591 7.65636 7.75040 7.79736 8.42764 9.19623 9.82645 10.41943 11.28939 Molecular weight = 339.06amu Principal moments of inertia in cm(-1) A = 0.017926 B = 0.003281 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.609147 B = 8530.919228 C = 8843.935767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.013 3.987 3 C -0.152 4.152 4 Br -0.038 7.038 5 C 0.128 3.872 6 N -0.481 5.481 7 C 0.120 3.880 8 C -0.121 4.121 9 C 0.095 3.905 10 N -0.524 5.524 11 C 0.045 3.955 12 C 0.149 3.851 13 N -0.594 5.594 14 C -0.255 4.255 15 H 0.065 0.935 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.182 3.818 23 C 0.035 3.965 24 H 0.093 0.907 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.161 0.839 28 H 0.158 0.842 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.254 0.746 36 H 0.026 0.974 37 H 0.084 0.916 38 H 0.025 0.975 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.014 9.921 -17.372 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.003 3.997 3 C -0.233 4.233 4 Br 0.046 6.954 5 C -0.031 4.031 6 N -0.190 5.190 7 C -0.037 4.037 8 C -0.124 4.124 9 C -0.033 4.033 10 N -0.249 5.249 11 C -0.085 4.085 12 C 0.022 3.978 13 N -0.318 5.318 14 C -0.385 4.385 15 H 0.083 0.917 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.056 3.944 23 C -0.094 4.094 24 H 0.111 0.889 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.178 0.822 28 H 0.175 0.825 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.102 0.898 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.254 10.937 -17.106 20.342 hybrid contribution 0.414 -1.450 0.637 1.637 sum 1.669 9.487 -16.469 19.079 Atomic orbital electron populations 1.20961 0.88906 1.03325 1.04299 1.20100 0.97653 0.90450 0.91527 1.22883 0.96180 0.92421 1.11861 1.96682 1.77340 1.23712 1.97642 1.22741 0.89493 0.96956 0.93888 1.67820 1.39996 0.98030 1.13119 1.22844 0.91241 0.96353 0.93264 1.20727 0.94538 0.95664 1.01516 1.21007 0.97358 0.91443 0.93523 1.62125 1.31373 1.30116 1.01301 1.22642 0.97723 0.88098 0.99996 1.20966 0.91710 0.98442 0.86633 1.44113 1.42628 1.21920 1.23099 1.19189 1.42416 0.88915 0.87953 0.91703 1.25064 1.01642 0.96002 0.96742 1.70028 1.49879 1.12582 1.22096 0.86287 0.79015 0.80480 0.81092 1.21498 1.21714 1.20371 1.20884 0.95039 0.87820 0.90662 1.22994 0.92794 0.98689 0.94894 0.88895 0.91085 0.90118 0.82196 0.82468 0.94144 0.89802 0.95239 0.91912 0.92587 0.95672 0.93599 0.95596 0.89789 0.95620 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.17 36.01 0.33 -1.04 16 2 C 0.01 0.16 5.92 -104.29 -0.62 -0.46 16 3 C -0.15 -1.88 6.24 -39.38 -0.25 -2.13 16 4 Br -0.04 -0.41 32.08 -68.01 -2.18 -2.59 16 5 C 0.13 1.59 10.95 -17.52 -0.19 1.40 16 6 N -0.48 -6.59 10.36 -13.23 -0.14 -6.72 16 7 C 0.12 1.57 10.15 -17.55 -0.18 1.39 16 8 C -0.12 -1.58 3.74 -104.48 -0.39 -1.97 16 9 C 0.09 1.22 4.56 -4.98 -0.02 1.20 16 10 N -0.52 -8.57 4.67 -235.47 -1.10 -9.67 16 11 C 0.04 0.74 5.61 -3.70 -0.02 0.72 16 12 C 0.15 3.06 6.69 -3.60 -0.02 3.04 16 13 N -0.59 -14.83 3.02 -171.73 -0.52 -15.34 16 14 C -0.26 -6.98 9.61 -15.06 -0.14 -7.12 16 15 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 16 C 0.00 0.12 4.93 -17.43 -0.09 0.04 16 17 N -0.90 -26.27 11.26 55.49 0.62 -25.64 16 18 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.18 4.37 5.43 -3.37 -0.02 4.35 16 23 C 0.04 0.68 5.27 -3.46 -0.02 0.66 16 24 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.07 0.73 7.00 -51.93 -0.36 0.36 16 26 H 0.08 0.88 6.24 -51.93 -0.32 0.56 16 27 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 28 H 0.16 1.79 8.00 -52.48 -0.42 1.37 16 29 H 0.04 0.50 7.96 -51.93 -0.41 0.08 16 30 H 0.08 0.94 6.79 -51.93 -0.35 0.59 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 2.26 6.24 -51.93 -0.32 1.94 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 LS Contribution 329.99 15.07 4.97 4.97 Total: -1.00 -29.70 329.99 -10.44 -40.14 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.44 Total: -1.85 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -1.63 Total: 0.08 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -1.13 Total: -57.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.18 Total: -2.59 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.70 -10.44 -40.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.940 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds