Wall clock time and date at job start Tue Mar 31 2020 22:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38753 * 120.79652 * 2 1 4 4 Br 1.89105 * 120.42882 * 0.02562 * 3 2 1 5 5 C 1.38281 * 119.14438 * 180.25549 * 3 2 1 6 6 N 1.31871 * 120.74711 * 359.76822 * 5 3 2 7 7 C 1.31853 * 121.74010 * 359.97438 * 6 5 3 8 8 C 1.38231 * 120.78464 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.41647 * 180.02562 * 8 7 6 10 10 N 1.46896 * 109.46847 * 105.50674 * 9 8 7 11 11 C 1.46901 * 110.99712 * 184.26651 * 10 9 8 12 12 C 1.53243 * 109.34210 * 187.25204 * 11 10 9 13 13 N 1.47082 * 108.51994 * 306.17238 * 12 11 10 14 14 C 1.36932 * 120.87966 * 231.18369 * 13 12 11 15 15 H 1.08007 * 119.99915 * 28.80670 * 14 13 12 16 16 C 1.38815 * 120.00112 * 208.53382 * 14 13 12 17 17 N 1.31615 * 119.99675 * 16.66861 * 16 14 13 18 18 Si 1.86806 * 119.99847 * 196.66862 * 16 14 13 19 19 H 1.48496 * 109.46762 * 94.98172 * 18 16 14 20 20 H 1.48496 * 109.46786 * 214.97832 * 18 16 14 21 21 H 1.48497 * 109.47082 * 334.98021 * 18 16 14 22 22 C 1.47074 * 118.23998 * 51.45125 * 13 12 11 23 23 C 1.46898 * 111.00097 * 308.56250 * 10 9 8 24 24 H 1.09002 * 109.46920 * 274.61502 * 1 2 3 25 25 H 1.08996 * 109.46972 * 34.61526 * 1 2 3 26 26 H 1.08998 * 109.47458 * 154.61809 * 1 2 3 27 27 H 1.07998 * 119.62218 * 179.75257 * 5 3 2 28 28 H 1.08004 * 119.60961 * 180.02562 * 7 6 5 29 29 H 1.08997 * 109.47026 * 345.50877 * 9 8 7 30 30 H 1.08997 * 109.47195 * 225.50663 * 9 8 7 31 31 H 1.09004 * 109.49835 * 67.29625 * 11 10 9 32 32 H 1.08997 * 109.49714 * 307.21334 * 11 10 9 33 33 H 1.08998 * 109.62986 * 186.45865 * 12 11 10 34 34 H 1.09002 * 109.78857 * 65.97308 * 12 11 10 35 35 H 0.97003 * 119.99796 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.62608 * 68.25360 * 22 13 12 37 37 H 1.08995 * 109.63042 * 188.83407 * 22 13 12 38 38 H 1.08996 * 109.49836 * 292.71198 * 23 10 9 39 39 H 1.08998 * 109.49123 * 52.76654 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2175 1.1919 0.0000 4 35 1.3072 2.8494 0.0007 5 6 3.5997 1.1520 -0.0054 6 7 4.2409 -0.0003 -0.0059 7 6 3.5984 -1.1517 -0.0008 8 6 2.2167 -1.1907 0.0058 9 6 1.4907 -2.5114 0.0121 10 7 0.9367 -2.7591 1.3499 11 6 0.3081 -4.0849 1.4220 12 6 -0.4120 -4.2327 2.7666 13 7 0.5451 -3.9387 3.8440 14 6 0.7144 -4.8063 4.8898 15 1 0.5441 -5.8633 4.7475 16 6 1.1103 -4.3280 6.1313 17 7 1.0086 -3.0447 6.4050 18 14 1.7872 -5.5059 7.4135 19 1 3.2703 -5.5186 7.3398 20 1 1.3626 -5.0630 8.7657 21 1 1.2670 -6.8724 7.1540 22 6 1.3113 -2.6854 3.7714 23 6 1.9678 -2.6014 2.3842 24 1 -0.3633 0.0827 1.0244 25 1 -0.3633 0.8457 -0.5838 26 1 -0.3634 -0.9284 -0.4405 27 1 4.1603 2.0751 -0.0095 28 1 4.1583 -2.0752 -0.0010 29 1 2.1864 -3.3096 -0.2466 30 1 0.6811 -2.4845 -0.7172 31 1 1.0735 -4.8558 1.3328 32 1 -0.4117 -4.1909 0.6104 33 1 -0.7822 -5.2523 2.8737 34 1 -1.2464 -3.5331 2.8172 35 1 1.2849 -2.7105 7.2728 36 1 0.6411 -1.8378 3.9146 37 1 2.0811 -2.6816 4.5431 38 1 2.7102 -3.3929 2.2816 39 1 2.4520 -1.6316 2.2701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596995708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:45 Heat of formation + Delta-G solvation = 51.553365 kcal Electronic energy + Delta-G solvation = -21876.700232 eV Core-core repulsion = 18672.474352 eV Total energy + Delta-G solvation = -3204.225880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 339.064 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63281 -39.51552 -36.56937 -35.17380 -33.99068 -32.67338 -31.62574 -30.85907 -29.17188 -28.50236 -26.47038 -24.40739 -24.21972 -23.37888 -22.15759 -20.78358 -18.74554 -17.98820 -17.48427 -17.10101 -16.42084 -16.32879 -15.63046 -15.46054 -15.28635 -15.11315 -14.79898 -14.67649 -14.13403 -13.83014 -13.75197 -13.62168 -13.23984 -13.06700 -12.82072 -12.64393 -12.46128 -12.27475 -12.17562 -12.05697 -11.89998 -11.62280 -11.45309 -11.34861 -10.60544 -10.51726 -10.32893 -9.88466 -9.24556 -8.66457 -7.88633 -5.34932 -0.18530 0.09749 0.50539 1.45422 1.46739 1.56054 2.49309 2.51895 3.10052 3.27669 3.37864 3.58992 3.66097 3.68889 3.79292 4.01743 4.26713 4.29812 4.36904 4.49147 4.51770 4.60589 4.68090 4.68186 4.72387 4.83608 4.87323 4.91314 5.05143 5.18429 5.20464 5.28565 5.36966 5.51485 5.61587 5.65133 6.14597 6.23571 6.37352 6.78332 7.12741 7.83737 8.38304 9.17973 Molecular weight = 339.06amu Principal moments of inertia in cm(-1) A = 0.017926 B = 0.003281 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.609147 B = 8530.919228 C = 8843.935767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.004 3.996 3 C -0.161 4.161 4 Br -0.025 7.025 5 C 0.124 3.876 6 N -0.500 5.500 7 C 0.114 3.886 8 C -0.130 4.130 9 C 0.100 3.900 10 N -0.529 5.529 11 C 0.056 3.944 12 C 0.143 3.857 13 N -0.613 5.613 14 C -0.264 4.264 15 H 0.069 0.931 16 C -0.049 4.049 17 N -0.936 5.936 18 Si 0.966 3.034 19 H -0.287 1.287 20 H -0.295 1.295 21 H -0.265 1.265 22 C 0.191 3.809 23 C 0.060 3.940 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.179 0.821 28 H 0.171 0.829 29 H 0.055 0.945 30 H 0.109 0.891 31 H 0.028 0.972 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.016 0.984 35 H 0.249 0.751 36 H -0.005 1.005 37 H 0.047 0.953 38 H 0.021 0.979 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 9.267 -19.285 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.006 4.006 3 C -0.243 4.243 4 Br 0.060 6.940 5 C -0.034 4.034 6 N -0.209 5.209 7 C -0.043 4.043 8 C -0.133 4.133 9 C -0.027 4.027 10 N -0.254 5.254 11 C -0.072 4.072 12 C 0.018 3.982 13 N -0.337 5.337 14 C -0.394 4.394 15 H 0.086 0.914 16 C -0.245 4.245 17 N -0.582 5.582 18 Si 0.794 3.206 19 H -0.214 1.214 20 H -0.222 1.222 21 H -0.190 1.190 22 C 0.065 3.935 23 C -0.070 4.070 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.196 0.804 28 H 0.188 0.812 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.046 0.954 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.216 10.269 -19.062 21.686 hybrid contribution 0.364 -1.179 1.181 1.708 sum 1.580 9.090 -17.881 20.121 Atomic orbital electron populations 1.20932 0.88163 1.04457 1.03430 1.20330 0.98300 0.90675 0.91271 1.23029 0.96431 0.93079 1.11714 1.96690 1.77040 1.22686 1.97597 1.23091 0.89823 0.97378 0.93140 1.67845 1.40597 0.98591 1.13863 1.23109 0.91545 0.96763 0.92913 1.20773 0.94593 0.95839 1.02126 1.21060 0.98517 0.91673 0.91454 1.62013 1.30763 1.30123 1.02542 1.22487 0.98150 0.88059 0.98541 1.21154 0.91200 0.98391 0.87481 1.44389 1.43986 1.21644 1.23673 1.19547 1.41576 0.89565 0.88727 0.91375 1.25820 1.02444 0.97413 0.98790 1.70191 1.51356 1.14403 1.22290 0.85274 0.78072 0.79049 0.78228 1.21429 1.22211 1.18977 1.20587 0.93486 0.86669 0.92753 1.22517 0.92692 0.98721 0.93036 0.90662 0.89884 0.89100 0.80376 0.81202 0.92704 0.87267 0.95365 0.87905 0.92095 0.96565 0.94176 0.98727 0.93502 0.96059 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 9.17 71.24 0.65 -1.76 16 2 C 0.00 0.10 5.92 -19.65 -0.12 -0.02 16 3 C -0.16 -3.76 6.24 22.40 0.14 -3.62 16 4 Br -0.02 -0.50 32.08 -20.37 -0.65 -1.15 16 5 C 0.12 2.92 10.95 84.70 0.93 3.85 16 6 N -0.50 -13.05 10.36 -195.77 -2.03 -15.08 16 7 C 0.11 2.77 10.15 84.69 0.86 3.63 16 8 C -0.13 -3.12 3.74 -19.77 -0.07 -3.19 16 9 C 0.10 2.25 4.56 85.56 0.39 2.64 16 10 N -0.53 -16.18 4.67 -898.88 -4.20 -20.38 16 11 C 0.06 1.72 5.61 86.38 0.48 2.20 16 12 C 0.14 5.74 6.69 86.35 0.58 6.32 16 13 N -0.61 -30.88 3.02 -697.23 -2.11 -32.99 16 14 C -0.26 -14.56 9.61 84.03 0.81 -13.75 16 15 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 16 C -0.05 -2.77 4.93 84.86 0.42 -2.35 16 17 N -0.94 -56.37 11.26 21.65 0.24 -56.13 16 18 Si 0.97 45.11 29.59 68.60 2.03 47.14 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.19 9.45 5.43 86.51 0.47 9.92 16 23 C 0.06 2.26 5.27 86.54 0.46 2.72 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 25 H 0.08 1.53 7.00 -2.39 -0.02 1.52 16 26 H 0.09 1.72 6.24 -2.39 -0.01 1.70 16 27 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 28 H 0.17 3.55 8.00 -2.91 -0.02 3.53 16 29 H 0.05 1.13 7.96 -2.39 -0.02 1.11 16 30 H 0.11 1.96 6.79 -2.39 -0.02 1.95 16 31 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 2.37 8.11 -2.39 -0.02 2.36 16 33 H 0.06 2.34 7.95 -2.39 -0.02 2.32 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 36 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 37 H 0.05 2.64 6.24 -2.39 -0.01 2.62 16 38 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 2.25 6.16 -2.39 -0.01 2.23 16 Total: -1.00 -65.18 329.99 0.33 -64.86 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.05 Total: 7.15 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 5.99 Total: 6.59 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -8.09 Total: -124.58 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -0.65 Total: -1.15 kcal Total: -65.18 0.33 -64.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596995708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.409 kcal (2) G-P(sol) polarization free energy of solvation -65.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds