Wall clock time and date at job start Tue Mar 31 2020 22:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39773 * 125.84073 * 2 1 4 4 C 1.36176 * 107.81165 * 180.16734 * 3 2 1 5 5 N 1.39217 * 126.21697 * 179.84867 * 4 3 2 6 6 S 1.65600 * 120.00119 * 3.40130 * 5 4 3 7 7 O 1.42098 * 106.40102 * 181.46489 * 6 5 4 8 8 O 1.42103 * 106.39959 * 48.54250 * 6 5 4 9 9 C 1.76200 * 107.21920 * 295.00594 * 6 5 4 10 10 C 1.38215 * 120.01457 * 115.26625 * 9 6 5 11 11 C 1.38220 * 120.02543 * 180.02562 * 10 9 6 12 12 C 1.38268 * 120.05252 * 0.02562 * 11 10 9 13 13 C 1.38173 * 120.02562 * 359.97438 * 12 11 10 14 14 C 1.38442 * 120.01037 * 295.29970 * 9 6 5 15 15 F 1.35098 * 120.02520 * 359.95129 * 14 9 6 16 16 N 1.35244 * 107.56109 * 359.58070 * 4 3 2 17 17 C 1.46498 * 126.04476 * 180.25977 * 16 4 3 18 18 C 1.50705 * 109.46696 * 90.00416 * 17 16 4 19 19 H 1.07991 * 120.00344 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99808 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99902 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47263 * 89.99744 * 22 20 18 24 24 H 1.48507 * 109.46895 * 209.99935 * 22 20 18 25 25 H 1.48497 * 109.47372 * 329.99464 * 22 20 18 26 26 N 1.30840 * 125.83944 * 179.70160 * 2 1 3 27 27 H 1.09000 * 109.46923 * 270.27580 * 1 2 3 28 28 H 1.08997 * 109.46984 * 30.27498 * 1 2 3 29 29 H 1.08998 * 109.47111 * 150.27285 * 1 2 3 30 30 H 1.07994 * 126.09699 * 0.02562 * 3 2 1 31 31 H 0.96995 * 119.99734 * 183.40110 * 5 4 3 32 32 H 1.07998 * 119.98712 * 0.04908 * 10 9 6 33 33 H 1.08001 * 119.97382 * 180.28320 * 11 10 9 34 34 H 1.08000 * 119.98538 * 179.97438 * 12 11 10 35 35 H 1.08002 * 120.01327 * 180.02562 * 13 12 11 36 36 H 1.09000 * 109.47672 * 210.00584 * 17 16 4 37 37 H 1.09001 * 109.46986 * 330.00864 * 17 16 4 38 38 H 0.96997 * 119.99574 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1331 0.0000 4 6 3.6203 0.7116 -0.0038 5 7 4.7501 1.5251 -0.0080 6 16 4.5858 3.1707 0.0763 7 8 5.8997 3.7086 0.0170 8 8 3.6872 3.4300 1.1462 9 6 3.7689 3.6895 -1.3962 10 6 2.5108 4.2572 -1.3256 11 6 1.8695 4.6638 -2.4806 12 6 2.4855 4.5026 -3.7079 13 6 3.7433 3.9353 -3.7811 14 6 4.3869 3.5279 -2.6245 15 9 5.6168 2.9734 -2.6948 16 7 3.6093 -0.6408 0.0034 17 6 4.7867 -1.5124 0.0079 18 6 5.1905 -1.8038 1.4303 19 1 4.6262 -1.3823 2.2489 20 6 6.2804 -2.6086 1.6864 21 7 6.9672 -3.1223 0.6894 22 14 6.7804 -2.9704 3.4494 23 1 6.0804 -4.1919 3.9218 24 1 8.2485 -3.1850 3.5134 25 1 6.4100 -1.8218 4.3147 26 7 2.2731 -1.0607 0.0055 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.9906 2.1598 0.0004 31 1 5.6334 1.1279 -0.0604 32 1 2.0287 4.3836 -0.3675 33 1 0.8883 5.1115 -2.4239 34 1 1.9833 4.8203 -4.6097 35 1 4.2244 3.8098 -4.7398 36 1 4.5493 -2.4466 -0.5011 37 1 5.6083 -1.0159 -0.5086 38 1 7.7337 -3.6888 0.8697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608926678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:33 Heat of formation + Delta-G solvation = -12.471071 kcal Electronic energy + Delta-G solvation = -27631.310410 eV Core-core repulsion = 23517.319310 eV Total energy + Delta-G solvation = -4113.991100 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.084 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.39167 -40.67725 -39.22889 -37.30284 -35.97779 -35.12720 -33.85590 -32.12606 -31.78576 -30.86892 -29.20596 -28.06974 -26.09000 -23.89352 -23.17333 -22.91462 -20.96185 -20.00301 -19.26750 -18.46589 -17.37773 -17.14287 -17.07644 -16.72951 -16.48191 -15.97381 -15.35777 -15.12783 -14.82041 -14.56372 -14.52781 -14.27921 -13.67635 -13.21161 -12.90085 -12.81358 -12.79749 -12.63698 -12.37212 -12.28681 -12.16563 -12.00382 -11.97486 -11.96742 -11.57976 -11.33369 -11.02692 -10.86774 -10.83664 -10.31434 -9.90919 -9.82800 -9.81551 -9.18286 -8.69565 -8.08582 -7.71143 -6.31569 -4.39701 0.08037 0.41517 0.79704 2.48159 2.72613 3.04052 3.20709 3.26888 3.28178 3.31457 3.54108 3.60679 3.72170 4.12050 4.27011 4.44149 4.54630 4.78860 4.87270 4.99846 5.01750 5.19804 5.22090 5.45526 5.58844 5.67966 5.69828 5.88857 5.93682 5.98486 6.01015 6.20981 6.36756 6.39416 6.76597 6.89411 6.97964 7.33613 7.61017 7.79949 7.87612 8.49821 8.68457 9.27835 10.76083 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.004365 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.688366 B = 6413.737079 C = 7215.061788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.071 3.929 3 C -0.335 4.335 4 C 0.333 3.667 5 N -1.024 6.024 6 S 2.705 3.295 7 O -0.939 6.939 8 O -0.931 6.931 9 C -0.710 4.710 10 C 0.011 3.989 11 C -0.149 4.149 12 C -0.036 4.036 13 C -0.174 4.174 14 C 0.200 3.800 15 F -0.120 7.120 16 N -0.333 5.333 17 C 0.254 3.746 18 C -0.542 4.542 19 H 0.067 0.933 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.907 3.093 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.271 1.271 26 N -0.284 5.284 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.142 0.858 31 H 0.435 0.565 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 15.936 -9.414 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 C -0.368 4.368 4 C 0.106 3.894 5 N -0.777 5.777 6 S 2.792 3.208 7 O -0.929 6.929 8 O -0.921 6.921 9 C -0.797 4.797 10 C -0.008 4.008 11 C -0.168 4.168 12 C -0.054 4.054 13 C -0.193 4.193 14 C 0.179 3.821 15 F -0.098 7.098 16 N -0.117 5.117 17 C 0.137 3.863 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.137 4.137 21 N -0.527 5.527 22 Si 0.734 3.266 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.195 1.195 26 N -0.109 5.109 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.160 0.840 31 H 0.273 0.727 32 H 0.173 0.827 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.510 15.038 -8.788 19.845 hybrid contribution 0.962 0.126 0.126 0.979 sum -8.547 15.163 -8.662 19.443 Atomic orbital electron populations 1.20057 0.87319 1.02454 1.02497 1.21796 0.96439 0.90252 1.00969 1.20597 0.89001 1.00134 1.27118 1.17449 0.86457 0.84486 1.01026 1.52886 1.13420 1.24620 1.86733 1.01878 0.73720 0.71233 0.73993 1.93655 1.36775 1.75507 1.86932 1.93623 1.65995 1.82902 1.49604 1.30925 1.10546 1.20370 1.17824 1.20931 0.90030 0.89190 1.00619 1.21351 1.01169 1.02205 0.92108 1.21351 0.92975 0.92488 0.98606 1.21254 0.97081 1.03285 0.97686 1.17089 0.79862 0.91709 0.93415 1.91633 1.39209 1.81887 1.97035 1.49386 1.06689 1.02195 1.53405 1.19718 0.77750 0.89648 0.99216 1.21337 1.13480 1.31994 0.91241 0.91477 1.24941 0.95592 0.94859 0.98324 1.69916 1.19167 1.32459 1.31196 0.86336 0.77674 0.79074 0.83547 1.20195 1.20806 1.19539 1.77391 0.86014 1.21689 1.25795 0.90943 0.91121 0.91306 0.84047 0.72656 0.82670 0.84090 0.84137 0.83722 0.92321 0.93445 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.44 36.00 0.38 -0.47 16 2 C 0.07 1.31 7.21 -82.44 -0.59 0.72 16 3 C -0.33 -6.13 9.17 -39.75 -0.36 -6.50 16 4 C 0.33 6.76 7.57 -153.40 -1.16 5.60 16 5 N -1.02 -18.61 5.87 31.11 0.18 -18.43 16 6 S 2.71 43.92 4.93 -107.50 -0.53 43.39 16 7 O -0.94 -16.88 17.45 -57.17 -1.00 -17.88 16 8 O -0.93 -16.22 15.34 -57.17 -0.88 -17.09 16 9 C -0.71 -9.46 5.22 -39.51 -0.21 -9.66 16 10 C 0.01 0.12 8.22 -39.60 -0.33 -0.20 16 11 C -0.15 -1.17 10.04 -39.58 -0.40 -1.57 16 12 C -0.04 -0.27 10.04 -39.59 -0.40 -0.67 16 13 C -0.17 -1.67 10.03 -39.52 -0.40 -2.07 16 14 C 0.20 2.59 7.21 -39.42 -0.28 2.31 16 15 F -0.12 -1.74 16.30 2.25 0.04 -1.70 16 16 N -0.33 -7.67 3.60 -61.63 -0.22 -7.89 16 17 C 0.25 6.41 6.02 -5.19 -0.03 6.38 16 18 C -0.54 -14.85 9.39 -34.44 -0.32 -15.18 16 19 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 20 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 21 N -0.89 -24.80 13.29 55.43 0.74 -24.07 16 22 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 N -0.28 -6.32 12.56 33.65 0.42 -5.90 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.14 2.18 5.10 -52.49 -0.27 1.91 16 31 H 0.44 7.75 8.06 -34.47 -0.28 7.47 16 32 H 0.16 1.43 7.13 -52.49 -0.37 1.05 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.05 1.17 7.45 -51.93 -0.39 0.78 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 346.83 15.07 5.23 5.23 Total: -1.00 -33.90 346.83 -9.06 -42.95 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.81 Total: 4.79 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -4.20 Total: -19.59 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 1.12 Total: -56.29 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -1.87 Total: -34.98 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 43.92 SS G_CDS: -0.53 Total: 43.39 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.90 -9.06 -42.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608926678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.482 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds