Wall clock time and date at job start Tue Mar 31 2020 22:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39773 * 125.84073 * 2 1 4 4 C 1.36176 * 107.81165 * 180.16734 * 3 2 1 5 5 N 1.39217 * 126.21697 * 179.84867 * 4 3 2 6 6 S 1.65600 * 120.00119 * 3.40130 * 5 4 3 7 7 O 1.42098 * 106.40102 * 181.46489 * 6 5 4 8 8 O 1.42103 * 106.39959 * 48.54250 * 6 5 4 9 9 C 1.76200 * 107.21920 * 295.00594 * 6 5 4 10 10 C 1.38215 * 120.01457 * 115.26625 * 9 6 5 11 11 C 1.38220 * 120.02543 * 180.02562 * 10 9 6 12 12 C 1.38268 * 120.05252 * 0.02562 * 11 10 9 13 13 C 1.38173 * 120.02562 * 359.97438 * 12 11 10 14 14 C 1.38442 * 120.01037 * 295.29970 * 9 6 5 15 15 F 1.35098 * 120.02520 * 359.95129 * 14 9 6 16 16 N 1.35244 * 107.56109 * 359.58070 * 4 3 2 17 17 C 1.46498 * 126.04476 * 180.25977 * 16 4 3 18 18 C 1.50705 * 109.46696 * 90.00416 * 17 16 4 19 19 H 1.07991 * 120.00344 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99808 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99902 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47263 * 89.99744 * 22 20 18 24 24 H 1.48507 * 109.46895 * 209.99935 * 22 20 18 25 25 H 1.48497 * 109.47372 * 329.99464 * 22 20 18 26 26 N 1.30840 * 125.83944 * 179.70160 * 2 1 3 27 27 H 1.09000 * 109.46923 * 270.27580 * 1 2 3 28 28 H 1.08997 * 109.46984 * 30.27498 * 1 2 3 29 29 H 1.08998 * 109.47111 * 150.27285 * 1 2 3 30 30 H 1.07994 * 126.09699 * 0.02562 * 3 2 1 31 31 H 0.96995 * 119.99734 * 183.40110 * 5 4 3 32 32 H 1.07998 * 119.98712 * 0.04908 * 10 9 6 33 33 H 1.08001 * 119.97382 * 180.28320 * 11 10 9 34 34 H 1.08000 * 119.98538 * 179.97438 * 12 11 10 35 35 H 1.08002 * 120.01327 * 180.02562 * 13 12 11 36 36 H 1.09000 * 109.47672 * 210.00584 * 17 16 4 37 37 H 1.09001 * 109.46986 * 330.00864 * 17 16 4 38 38 H 0.96997 * 119.99574 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1331 0.0000 4 6 3.6203 0.7116 -0.0038 5 7 4.7501 1.5251 -0.0080 6 16 4.5858 3.1707 0.0763 7 8 5.8997 3.7086 0.0170 8 8 3.6872 3.4300 1.1462 9 6 3.7689 3.6895 -1.3962 10 6 2.5108 4.2572 -1.3256 11 6 1.8695 4.6638 -2.4806 12 6 2.4855 4.5026 -3.7079 13 6 3.7433 3.9353 -3.7811 14 6 4.3869 3.5279 -2.6245 15 9 5.6168 2.9734 -2.6948 16 7 3.6093 -0.6408 0.0034 17 6 4.7867 -1.5124 0.0079 18 6 5.1905 -1.8038 1.4303 19 1 4.6262 -1.3823 2.2489 20 6 6.2804 -2.6086 1.6864 21 7 6.9672 -3.1223 0.6894 22 14 6.7804 -2.9704 3.4494 23 1 6.0804 -4.1919 3.9218 24 1 8.2485 -3.1850 3.5134 25 1 6.4100 -1.8218 4.3147 26 7 2.2731 -1.0607 0.0055 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.9906 2.1598 0.0004 31 1 5.6334 1.1279 -0.0604 32 1 2.0287 4.3836 -0.3675 33 1 0.8883 5.1115 -2.4239 34 1 1.9833 4.8203 -4.6097 35 1 4.2244 3.8098 -4.7398 36 1 4.5493 -2.4466 -0.5011 37 1 5.6083 -1.0159 -0.5086 38 1 7.7337 -3.6888 0.8697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608926678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:32 Heat of formation + Delta-G solvation = -35.919517 kcal Electronic energy + Delta-G solvation = -27632.327211 eV Core-core repulsion = 23517.319310 eV Total energy + Delta-G solvation = -4115.007901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.084 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.37182 -42.23769 -39.97999 -38.64360 -37.32224 -36.59894 -35.77581 -33.87205 -32.58177 -31.61750 -30.74735 -29.61329 -27.82725 -24.83999 -24.66955 -23.94758 -22.45950 -21.44432 -20.51712 -19.56442 -18.91285 -18.55805 -18.42670 -18.14694 -17.62649 -16.97799 -16.75905 -16.36412 -16.25501 -16.00185 -15.91908 -15.26160 -14.72682 -14.55592 -14.48880 -14.10814 -13.88129 -13.76301 -13.68014 -13.62954 -13.48393 -13.43523 -13.33263 -13.11579 -12.99442 -12.72927 -12.70087 -12.56081 -12.31053 -11.90172 -11.75578 -11.40560 -10.79551 -10.63083 -9.95337 -9.74913 -9.25783 -8.40375 -6.57463 -1.12007 -0.45464 0.05864 0.97631 1.32620 1.34000 1.34473 1.46030 1.84741 1.89718 2.23419 2.30687 2.44794 2.85958 2.90388 3.07522 3.48824 3.62546 3.76401 3.89605 4.15887 4.20318 4.44637 4.47265 4.49557 4.72452 4.74340 4.77917 4.81518 4.90201 4.97245 5.08701 5.14823 5.21281 5.23189 5.43506 5.47722 5.72018 5.73054 5.90669 6.13560 6.53910 6.94962 7.14189 8.66632 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.004365 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.688366 B = 6413.737079 C = 7215.061788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.079 3.921 3 C -0.331 4.331 4 C 0.324 3.676 5 N -1.032 6.032 6 S 2.707 3.293 7 O -0.967 6.967 8 O -0.950 6.950 9 C -0.719 4.719 10 C -0.003 4.003 11 C -0.134 4.134 12 C -0.020 4.020 13 C -0.174 4.174 14 C 0.163 3.837 15 F -0.141 7.141 16 N -0.362 5.362 17 C 0.270 3.730 18 C -0.559 4.559 19 H 0.050 0.950 20 C 0.024 3.976 21 N -0.915 5.915 22 Si 0.969 3.031 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.272 1.272 26 N -0.330 5.330 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.172 0.828 31 H 0.431 0.569 32 H 0.167 0.833 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.165 0.835 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.947 17.972 -10.425 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.086 4.086 3 C -0.364 4.364 4 C 0.098 3.902 5 N -0.781 5.781 6 S 2.800 3.200 7 O -0.957 6.957 8 O -0.940 6.940 9 C -0.811 4.811 10 C -0.022 4.022 11 C -0.152 4.152 12 C -0.038 4.038 13 C -0.194 4.194 14 C 0.142 3.858 15 F -0.120 7.120 16 N -0.147 5.147 17 C 0.151 3.849 18 C -0.597 4.597 19 H 0.068 0.932 20 C -0.177 4.177 21 N -0.553 5.553 22 Si 0.792 3.208 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.197 1.197 26 N -0.154 5.154 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.189 0.811 31 H 0.268 0.732 32 H 0.184 0.816 33 H 0.202 0.798 34 H 0.205 0.795 35 H 0.183 0.817 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.363 17.068 -9.758 23.225 hybrid contribution 1.697 -0.358 0.295 1.760 sum -10.666 16.710 -9.463 21.967 Atomic orbital electron populations 1.20323 0.83168 1.04672 1.04087 1.22776 0.98812 0.89185 0.97864 1.21029 0.87984 1.01513 1.25883 1.17888 0.87856 0.83742 1.00691 1.53069 1.12893 1.25194 1.86938 1.01436 0.73327 0.70366 0.74865 1.93610 1.38732 1.75560 1.87832 1.93582 1.65925 1.82836 1.51623 1.30351 1.12084 1.22944 1.15756 1.21281 0.89038 0.89286 1.02585 1.21884 1.02338 1.00118 0.90891 1.21966 0.91602 0.89843 1.00353 1.21665 0.97975 1.02484 0.97232 1.17556 0.79862 0.93734 0.94675 1.91575 1.40632 1.82594 1.97157 1.49127 1.06541 1.02935 1.56063 1.19218 0.78802 0.89055 0.97813 1.21464 1.13897 1.32572 0.91795 0.93158 1.25732 0.95333 0.94385 1.02290 1.69993 1.19511 1.32732 1.33033 0.85392 0.77920 0.78790 0.78666 1.19504 1.19434 1.19691 1.77344 0.85928 1.23858 1.28317 0.89499 0.87422 0.90589 0.81081 0.73223 0.81606 0.79798 0.79538 0.81715 0.94938 0.93954 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.48 10.44 71.24 0.74 -0.74 16 2 C 0.08 2.86 7.21 43.08 0.31 3.17 16 3 C -0.33 -11.86 9.17 22.16 0.20 -11.66 16 4 C 0.32 13.58 7.57 131.43 0.99 14.58 16 5 N -1.03 -39.65 5.87 -55.50 -0.33 -39.98 16 6 S 2.71 91.00 4.93 -56.49 -0.28 90.72 16 7 O -0.97 -36.84 17.45 -128.00 -2.23 -39.07 16 8 O -0.95 -33.44 15.34 -128.00 -1.96 -35.40 16 9 C -0.72 -18.70 5.22 22.31 0.12 -18.58 16 10 C 0.00 -0.05 8.22 22.26 0.18 0.14 16 11 C -0.13 -1.39 10.04 22.27 0.22 -1.17 16 12 C -0.02 -0.19 10.04 22.26 0.22 0.03 16 13 C -0.17 -2.88 10.03 22.31 0.22 -2.65 16 14 C 0.16 4.15 7.21 22.38 0.16 4.31 16 15 F -0.14 -4.32 16.30 44.97 0.73 -3.59 16 16 N -0.36 -17.48 3.60 -348.90 -1.26 -18.74 16 17 C 0.27 14.50 6.02 85.64 0.52 15.02 16 18 C -0.56 -32.04 9.39 25.60 0.24 -31.80 16 19 H 0.05 2.99 7.81 -2.92 -0.02 2.96 16 20 C 0.02 1.35 5.46 84.66 0.46 1.81 16 21 N -0.91 -52.38 13.29 21.45 0.28 -52.10 16 22 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 26 N -0.33 -15.01 12.56 -47.45 -0.60 -15.60 16 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.17 4.93 5.10 -2.91 -0.01 4.91 16 31 H 0.43 16.81 8.06 -96.75 -0.78 16.03 16 32 H 0.17 2.57 7.13 -2.91 -0.02 2.55 16 33 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.19 0.15 8.06 -2.91 -0.02 0.12 16 35 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.04 2.26 7.45 -2.39 -0.02 2.24 16 38 H 0.27 14.68 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -78.36 346.83 1.34 -77.03 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.35 Total: 18.05 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 4.60 Total: -27.55 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -1.89 Total: -126.42 kcal Atomic # 8 Polarization: -70.28 SS G_CDS: -4.20 Total: -74.48 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.73 Total: -3.59 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 91.00 SS G_CDS: -0.28 Total: 90.72 kcal Total: -78.36 1.34 -77.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608926678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.106 kcal (2) G-P(sol) polarization free energy of solvation -78.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds