Wall clock time and date at job start Tue Mar 31 2020 21:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86800 * 119.99789 * 2 1 4 4 H 1.48496 * 109.47423 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47196 * 299.99708 * 3 2 1 6 6 H 1.48496 * 109.47324 * 59.99466 * 3 2 1 7 7 C 1.38793 * 120.00437 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00257 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00063 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46800 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00422 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99517 * 179.97438 * 11 10 9 14 14 N 1.40104 * 119.99809 * 180.02562 * 13 11 10 15 15 C 1.34779 * 119.99794 * 180.02562 * 14 13 11 16 16 O 1.21589 * 119.99775 * 179.97438 * 15 14 13 17 17 N 1.34777 * 120.00181 * 0.02562 * 15 14 13 18 18 C 1.40133 * 119.99824 * 185.33743 * 17 15 14 19 19 C 1.38839 * 120.00117 * 213.30680 * 18 17 15 20 20 C 1.38182 * 120.07073 * 179.75055 * 19 18 17 21 21 C 1.38551 * 120.11680 * 0.45671 * 20 19 18 22 22 C 1.39275 * 119.94351 * 359.54307 * 21 20 19 23 23 C 1.38503 * 119.89277 * 0.23172 * 22 21 20 24 24 O 1.36511 * 108.64643 * 180.25299 * 22 21 20 25 25 C 1.43979 * 105.49460 * 342.69592 * 24 22 21 26 26 O 1.36597 * 131.44374 * 179.84904 * 21 20 19 27 27 H 0.96998 * 120.00239 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47046 * 59.99727 * 10 9 7 29 29 H 1.09001 * 109.46665 * 299.99831 * 10 9 7 30 30 H 0.97001 * 120.00455 * 0.02562 * 13 11 10 31 31 H 0.96994 * 120.00183 * 0.02562 * 14 13 11 32 32 H 0.97001 * 120.00009 * 5.33481 * 17 15 14 33 33 H 1.08003 * 119.96237 * 0.02562 * 19 18 17 34 34 H 1.08003 * 119.94034 * 180.28467 * 20 19 18 35 35 H 1.08000 * 120.00956 * 180.02562 * 23 22 21 36 36 H 1.08998 * 110.57374 * 268.58934 * 25 24 22 37 37 H 1.09003 * 110.56900 * 145.71939 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0019 10 6 2.5160 -3.8913 0.0029 11 6 1.9875 -5.3026 0.0036 12 8 0.7912 -5.5022 0.0029 13 7 2.8443 -6.3430 0.0039 14 7 2.3531 -7.6551 0.0039 15 6 3.2099 -8.6954 0.0047 16 8 2.7835 -9.8341 0.0052 17 7 4.5393 -8.4736 0.0060 18 6 5.4293 -9.5502 -0.1060 19 6 6.6558 -9.5074 0.5434 20 6 7.5324 -10.5704 0.4381 21 6 7.1943 -11.6775 -0.3232 22 6 5.9647 -11.7233 -0.9758 23 6 5.0849 -10.6594 -0.8658 24 8 5.8706 -12.9084 -1.6468 25 6 7.2176 -13.4095 -1.7333 26 8 7.8707 -12.8348 -0.5860 27 1 -0.4850 0.8400 -0.0004 28 1 3.1246 -3.7304 0.8927 29 1 3.1245 -3.7320 -0.8872 30 1 3.8011 -6.1834 0.0041 31 1 1.3963 -7.8147 0.0033 32 1 4.8799 -7.5688 0.0845 33 1 6.9230 -8.6443 1.1351 34 1 8.4839 -10.5369 0.9479 35 1 4.1307 -10.6930 -1.3707 36 1 7.6935 -13.0718 -2.6539 37 1 7.2259 -14.4979 -1.6736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802095359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:06 Heat of formation + Delta-G solvation = -45.141832 kcal Electronic energy + Delta-G solvation = -25128.236326 eV Core-core repulsion = 21000.455726 eV Total energy + Delta-G solvation = -4127.780600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.51812 -41.09776 -39.43594 -38.09561 -36.61566 -35.86651 -34.65380 -32.54368 -31.78631 -30.87859 -29.44206 -28.51458 -26.18177 -25.59918 -23.79420 -23.39288 -21.58159 -21.47456 -19.78876 -18.78274 -18.23837 -18.00844 -17.65296 -17.27474 -16.80488 -16.05844 -15.89718 -15.71516 -15.13334 -15.11468 -14.90453 -14.82947 -14.32494 -14.25383 -14.06261 -13.59702 -13.50066 -13.32004 -13.20069 -12.74954 -12.58113 -11.96538 -11.70830 -11.36950 -11.15027 -11.14955 -10.91924 -10.77800 -10.32650 -9.96029 -9.89591 -9.18337 -9.08718 -8.59619 -8.40712 -8.12896 -6.65263 -6.33119 -4.05780 0.66964 0.83882 1.58087 2.21022 2.43692 2.53934 2.79702 3.06680 3.11093 3.14838 3.23531 3.27493 3.33158 4.07729 4.12949 4.26783 4.37299 4.49795 4.59922 4.63962 4.79067 4.86340 5.02842 5.13795 5.20192 5.40169 5.60634 5.61286 5.69729 5.77303 5.84330 5.88461 6.16054 6.20052 6.29857 6.75027 7.10580 7.31520 7.49012 7.91994 8.23649 8.29336 9.12600 10.74243 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.026712 B = 0.001814 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.973706 B =15434.718001 C =16201.548327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.539 4.539 8 H 0.076 0.924 9 S -0.050 6.050 10 C -0.147 4.147 11 C 0.537 3.463 12 O -0.504 6.504 13 N -0.542 5.542 14 N -0.520 5.520 15 C 0.713 3.287 16 O -0.558 6.558 17 N -0.681 5.681 18 C 0.181 3.819 19 C -0.136 4.136 20 C -0.077 4.077 21 C 0.011 3.989 22 C 0.055 3.945 23 C -0.104 4.104 24 O -0.306 6.306 25 C 0.213 3.787 26 O -0.310 6.310 27 H 0.269 0.731 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.416 0.584 31 H 0.448 0.552 32 H 0.408 0.592 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.084 0.916 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.415 -21.201 -1.545 28.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.687 4.687 8 H 0.094 0.906 9 S 0.176 5.824 10 C -0.299 4.299 11 C 0.323 3.677 12 O -0.375 6.375 13 N -0.298 5.298 14 N -0.275 5.275 15 C 0.412 3.588 16 O -0.431 6.431 17 N -0.332 5.332 18 C 0.086 3.914 19 C -0.157 4.157 20 C -0.096 4.096 21 C -0.034 4.034 22 C 0.010 3.990 23 C -0.125 4.125 24 O -0.222 6.222 25 C 0.101 3.899 26 O -0.226 6.226 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.257 0.743 31 H 0.295 0.705 32 H 0.245 0.755 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.168 0.832 36 H 0.102 0.898 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 15.989 -22.465 -1.551 27.618 hybrid contribution 2.231 1.594 -0.090 2.743 sum 18.221 -20.872 -1.641 27.755 Atomic orbital electron populations 1.70010 1.05990 1.27598 1.46491 1.25003 0.95049 0.99140 0.94340 0.86086 0.79539 0.81702 0.77984 1.19557 1.20523 1.20512 1.22890 0.95008 0.91369 1.59446 0.90618 1.85542 1.03831 0.96244 1.96781 1.23505 1.07472 0.93149 1.05750 1.20718 0.86484 0.85204 0.75308 1.90765 1.14923 1.84753 1.47018 1.45259 1.09406 0.95094 1.80016 1.44467 1.09877 0.93987 1.79192 1.15613 0.80762 0.83949 0.78459 1.91073 1.76115 1.18326 1.57578 1.42515 1.04199 1.09347 1.77123 1.16879 0.89931 0.88364 0.96245 1.20614 0.93592 1.00046 1.01445 1.19777 1.00776 0.89360 0.99697 1.19783 0.91818 0.88955 1.02795 1.19468 0.94794 0.87487 0.97261 1.19935 1.00989 0.90475 1.01081 1.87399 1.28937 1.31904 1.73959 1.25635 0.75622 0.99734 0.88880 1.87373 1.54592 1.33012 1.47619 0.92065 0.88364 0.88372 0.74267 0.70494 0.75494 0.83830 0.84092 0.83187 0.89811 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.96 13.22 55.49 0.73 -24.22 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 20.31 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.27 9.50 30.94 0.29 -13.98 16 8 H 0.08 1.87 7.80 -52.49 -0.41 1.46 16 9 S -0.05 -1.24 20.57 -107.50 -2.21 -3.45 16 10 C -0.15 -2.48 6.16 36.01 0.22 -2.25 16 11 C 0.54 8.39 7.96 -10.99 -0.09 8.30 16 12 O -0.50 -10.05 15.70 5.56 0.09 -9.96 16 13 N -0.54 -5.81 6.25 31.22 0.20 -5.62 16 14 N -0.52 -6.02 6.26 27.64 0.17 -5.84 16 15 C 0.71 8.24 8.41 -86.92 -0.73 7.51 16 16 O -0.56 -8.33 14.87 5.29 0.08 -8.25 16 17 N -0.68 -5.65 5.31 -14.20 -0.08 -5.72 16 18 C 0.18 1.66 6.28 -83.63 -0.53 1.13 16 19 C -0.14 -0.94 9.96 -39.38 -0.39 -1.33 16 20 C -0.08 -0.58 10.05 -39.49 -0.40 -0.97 16 21 C 0.01 0.11 7.15 -39.08 -0.28 -0.17 16 22 C 0.06 0.60 7.15 -39.10 -0.28 0.32 16 23 C -0.10 -1.16 8.67 -39.28 -0.34 -1.50 16 24 O -0.31 -3.22 11.40 -45.72 -0.52 -3.74 16 25 C 0.21 1.43 8.89 101.05 0.90 2.33 16 26 O -0.31 -2.86 11.41 -46.01 -0.52 -3.38 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.10 1.45 8.14 -51.92 -0.42 1.03 16 29 H 0.10 1.46 8.14 -51.92 -0.42 1.04 16 30 H 0.42 2.77 6.72 -182.59 -1.23 1.54 16 31 H 0.45 5.70 8.10 -182.60 -1.48 4.22 16 32 H 0.41 2.05 6.76 -40.82 -0.28 1.77 16 33 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 34 H 0.14 0.73 8.06 -52.48 -0.42 0.30 16 35 H 0.15 1.89 6.41 -52.49 -0.34 1.55 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -36.20 344.31 -9.01 -45.21 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.40 Total: 3.20 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.71 Total: 1.31 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 1.03 Total: -41.41 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.88 Total: -25.33 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: -1.24 SS G_CDS: -2.21 Total: -3.45 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.20 -9.01 -45.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802095359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.068 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds