Wall clock time and date at job start Tue Mar 31 2020 22:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00578 * 2 1 4 4 H 1.48501 * 109.47316 * 264.97102 * 3 2 1 5 5 H 1.48504 * 109.46810 * 24.96415 * 3 2 1 6 6 H 1.48498 * 109.47281 * 144.96630 * 3 2 1 7 7 C 1.38823 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99828 * 204.71477 * 7 2 1 9 9 N 1.36932 * 119.99811 * 24.71622 * 7 2 1 10 10 C 1.46507 * 120.00543 * 9.91197 * 9 7 2 11 11 C 1.50701 * 109.46835 * 268.33722 * 10 9 7 12 12 O 1.20823 * 120.00252 * 359.97438 * 11 10 9 13 13 O 1.34232 * 119.99406 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99660 * 189.91071 * 9 7 2 15 15 C 1.50703 * 109.46907 * 90.00438 * 14 9 7 16 16 N 1.30970 * 126.43916 * 90.26883 * 15 14 9 17 17 C 1.35223 * 105.57894 * 180.12655 * 16 15 14 18 18 C 1.48393 * 126.41780 * 179.88076 * 17 16 15 19 19 C 1.39365 * 120.08333 * 179.71787 * 18 17 16 20 20 C 1.37970 * 119.94595 * 180.02562 * 19 18 17 21 21 C 1.38521 * 120.12182 * 359.97438 * 20 19 18 22 22 F 1.35099 * 119.91466 * 180.02562 * 21 20 19 23 23 C 1.38755 * 120.17068 * 0.02562 * 21 20 19 24 24 F 1.35101 * 119.97454 * 180.02562 * 23 21 20 25 25 C 1.38174 * 120.04688 * 359.97438 * 23 21 20 26 26 N 1.30778 * 107.16911 * 359.62015 * 17 16 15 27 27 O 1.21288 * 110.09638 * 0.23978 * 26 17 16 28 28 H 0.97006 * 119.99619 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46722 * 28.33438 * 10 9 7 30 30 H 1.09002 * 109.46896 * 148.33445 * 10 9 7 31 31 H 0.96698 * 116.99457 * 180.02562 * 13 11 10 32 32 H 1.08993 * 109.47526 * 329.99881 * 14 9 7 33 33 H 1.08999 * 109.47050 * 209.99918 * 14 9 7 34 34 H 1.07993 * 120.02484 * 0.29429 * 19 18 17 35 35 H 1.07999 * 119.93742 * 179.97438 * 20 19 18 36 36 H 1.07998 * 120.05595 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6042 1.9849 -1.3947 5 1 1.3986 2.6810 0.5909 6 1 3.4906 1.4730 0.8037 7 6 2.0102 -1.2023 -0.0005 8 1 3.0160 -1.2453 0.3905 9 7 1.4195 -2.3336 -0.4969 10 6 0.1498 -2.2394 -1.2218 11 6 -0.9940 -2.4131 -0.2561 12 8 -0.7715 -2.5972 0.9171 13 8 -2.2600 -2.3633 -0.6995 14 6 2.0572 -3.6382 -0.3030 15 6 1.5669 -4.2507 0.9836 16 7 0.5271 -5.0343 1.1254 17 6 0.4738 -5.3321 2.4434 18 6 -0.5335 -6.1924 3.1122 19 6 -0.4594 -6.4163 4.4857 20 6 -1.3971 -7.2172 5.1045 21 6 -2.4124 -7.7988 4.3632 22 9 -3.3287 -8.5818 4.9735 23 6 -2.4909 -7.5792 2.9954 24 9 -3.4831 -8.1480 2.2762 25 6 -1.5555 -6.7784 2.3684 26 7 1.4795 -4.7243 3.0174 27 8 2.1148 -4.1008 2.1936 28 1 -0.4850 0.8401 0.0004 29 1 0.0763 -1.2627 -1.7003 30 1 0.1062 -3.0202 -1.9811 31 1 -2.9600 -2.4797 -0.0426 32 1 3.1386 -3.5106 -0.2558 33 1 1.8048 -4.2934 -1.1367 34 1 0.3288 -5.9598 5.0659 35 1 -1.3393 -7.3910 6.1689 36 1 -1.6167 -6.6070 1.3039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:59 Heat of formation + Delta-G solvation = -70.766641 kcal Electronic energy + Delta-G solvation = -29362.906741 eV Core-core repulsion = 24680.174579 eV Total energy + Delta-G solvation = -4682.732162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.086 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.66598 -49.73845 -46.25346 -40.51691 -40.17716 -37.85187 -36.53045 -36.22924 -34.35529 -32.94784 -32.23383 -31.27172 -29.61464 -28.22130 -25.83129 -25.04541 -24.24262 -23.66651 -22.34632 -21.73911 -19.39600 -19.05303 -18.74680 -18.69575 -18.43367 -18.12644 -17.86514 -17.49318 -17.11890 -16.97419 -16.14742 -16.13406 -15.95636 -15.67407 -15.56295 -15.31451 -15.19127 -15.12940 -14.15524 -14.03513 -13.90861 -13.63616 -13.38901 -13.24604 -12.95581 -12.64145 -12.56719 -12.46823 -12.38644 -12.10412 -11.99443 -11.92142 -11.84372 -11.19023 -11.06352 -10.58152 -10.28123 -9.75333 -9.30610 -8.05889 -5.37324 -0.69942 -0.22290 0.47054 1.38597 1.52600 1.55671 1.61864 2.08331 2.14824 2.27395 2.41440 2.46572 2.63479 2.78841 2.95278 3.18716 3.24371 3.47097 3.52085 3.77373 3.85039 4.00144 4.47846 4.52871 4.54576 4.63210 4.66660 4.71506 4.79261 4.87910 5.10594 5.13116 5.16997 5.21224 5.46958 5.63371 6.06455 6.17789 6.89136 7.29078 7.54068 7.73411 7.97090 9.02096 Molecular weight = 339.09amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.003352 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.043026 B = 8351.310927 C = 8946.346941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.039 4.039 3 Si 0.974 3.026 4 H -0.273 1.273 5 H -0.309 1.309 6 H -0.271 1.271 7 C -0.271 4.271 8 H 0.097 0.903 9 N -0.553 5.553 10 C 0.181 3.819 11 C 0.482 3.518 12 O -0.548 6.548 13 O -0.538 6.538 14 C 0.214 3.786 15 C 0.197 3.803 16 N -0.494 5.494 17 C 0.195 3.805 18 C -0.004 4.004 19 C -0.065 4.065 20 C -0.104 4.104 21 C 0.080 3.920 22 F -0.126 7.126 23 C 0.061 3.939 24 F -0.130 7.130 25 C -0.087 4.087 26 N -0.401 5.401 27 O 0.060 5.940 28 H 0.252 0.748 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.396 0.604 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.156 0.844 35 H 0.191 0.809 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -13.136 2.408 13.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.235 4.235 3 Si 0.803 3.197 4 H -0.199 1.199 5 H -0.237 1.237 6 H -0.196 1.196 7 C -0.400 4.400 8 H 0.115 0.885 9 N -0.271 5.271 10 C 0.053 3.947 11 C 0.323 3.677 12 O -0.436 6.436 13 O -0.349 6.349 14 C 0.084 3.916 15 C -0.026 4.026 16 N -0.228 5.228 17 C -0.075 4.075 18 C -0.007 4.007 19 C -0.085 4.085 20 C -0.122 4.122 21 C 0.059 3.941 22 F -0.104 7.104 23 C 0.041 3.959 24 F -0.109 7.109 25 C -0.108 4.108 26 N -0.114 5.114 27 O 0.005 5.995 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.253 0.747 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.174 0.826 35 H 0.208 0.792 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.388 -13.279 3.090 13.640 hybrid contribution -1.021 1.158 0.734 1.709 sum -1.409 -12.122 3.824 12.788 Atomic orbital electron populations 1.70031 1.06640 1.26229 1.53865 1.25560 0.95787 1.01597 1.00569 0.85179 0.77683 0.78727 0.78137 1.19934 1.23664 1.19624 1.19790 0.97382 0.85409 1.37459 0.88513 1.44854 1.20495 1.01870 1.59898 1.20659 0.79933 1.03464 0.90677 1.25211 0.83196 0.69035 0.90251 1.90502 1.85120 1.47189 1.20797 1.84544 1.18004 1.85860 1.46464 1.20652 0.99878 0.85568 0.85475 1.31591 0.89084 0.90208 0.91693 1.71798 1.18443 1.17455 1.15115 1.23916 0.96020 0.99520 0.88066 1.17309 0.92982 0.96842 0.93522 1.21275 0.99102 0.96168 0.91961 1.21262 0.91863 0.96409 1.02705 1.17891 0.91205 0.96026 0.88984 1.91541 1.64419 1.71761 1.82687 1.17446 0.89865 1.00012 0.88602 1.91529 1.58765 1.82923 1.77663 1.20953 0.92496 0.95459 1.01889 1.74637 1.09432 1.11258 1.16040 1.85171 1.45320 1.52668 1.16376 0.93856 0.88042 0.88320 0.74695 0.85994 0.85254 0.82642 0.79164 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.24 9.09 21.65 0.20 -49.04 16 2 C -0.04 -1.93 4.88 84.87 0.41 -1.52 16 3 Si 0.97 41.17 29.62 68.60 2.03 43.20 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.31 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.27 -12.78 9.70 84.04 0.81 -11.96 16 8 H 0.10 4.36 7.92 -2.91 -0.02 4.34 16 9 N -0.55 -22.97 2.10 -710.66 -1.49 -24.46 16 10 C 0.18 7.44 5.57 85.63 0.48 7.91 16 11 C 0.48 21.83 6.45 71.24 0.46 22.29 16 12 O -0.55 -28.60 14.49 21.97 0.32 -28.28 16 13 O -0.54 -21.20 13.42 -51.44 -0.69 -21.89 16 14 C 0.21 6.97 6.33 85.63 0.54 7.51 16 15 C 0.20 7.56 6.75 88.36 0.60 8.16 16 16 N -0.49 -19.29 10.22 -302.48 -3.09 -22.38 16 17 C 0.19 7.40 7.80 137.28 1.07 8.47 16 18 C 0.00 -0.14 5.88 -20.04 -0.12 -0.26 16 19 C -0.07 -1.57 9.69 22.48 0.22 -1.35 16 20 C -0.10 -1.96 10.01 22.27 0.22 -1.74 16 21 C 0.08 1.80 7.31 22.46 0.16 1.97 16 22 F -0.13 -2.83 17.18 44.97 0.77 -2.06 16 23 C 0.06 1.59 7.30 22.38 0.16 1.75 16 24 F -0.13 -3.53 17.18 44.97 0.77 -2.75 16 25 C -0.09 -2.51 9.68 22.52 0.22 -2.30 16 26 N -0.40 -16.01 11.85 -59.11 -0.70 -16.71 16 27 O 0.06 2.45 11.29 74.56 0.84 3.29 16 28 H 0.25 13.48 8.31 -92.70 -0.77 12.71 16 29 H 0.10 4.60 6.27 -2.39 -0.01 4.59 16 30 H 0.10 3.22 7.92 -2.39 -0.02 3.21 16 31 H 0.40 13.00 9.10 -74.06 -0.67 12.32 16 32 H 0.12 3.29 8.03 -2.39 -0.02 3.27 16 33 H 0.13 3.28 7.91 -2.39 -0.02 3.27 16 34 H 0.16 3.51 7.86 -2.91 -0.02 3.49 16 35 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.15 4.46 7.87 -2.91 -0.02 4.44 16 Total: -1.00 -67.02 334.36 4.72 -62.31 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.51 Total: 19.83 kcal Atomic # 6 Polarization: 33.70 SS G_CDS: 5.24 Total: 38.94 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -5.09 Total: -112.59 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: 0.47 Total: -46.88 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 1.54 Total: -4.81 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -67.02 4.72 -62.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.458 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds