Wall clock time and date at job start Tue Mar 31 2020 22:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47356 * 344.85668 * 3 2 1 5 5 N 1.46495 * 109.47503 * 180.02562 * 4 3 2 6 6 C 1.46504 * 119.99938 * 274.99980 * 5 4 3 7 7 C 1.50695 * 109.46975 * 274.99616 * 6 5 4 8 8 H 1.07998 * 119.99791 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99868 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00072 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00050 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47197 * 89.99527 * 11 9 7 13 13 H 1.48499 * 109.47199 * 209.99863 * 11 9 7 14 14 H 1.48507 * 109.46843 * 329.99894 * 11 9 7 15 15 S 1.65599 * 120.00279 * 94.99409 * 5 4 3 16 16 O 1.42097 * 106.40387 * 336.46487 * 15 5 4 17 17 O 1.42102 * 106.40624 * 203.54666 * 15 5 4 18 18 C 1.76196 * 107.21658 * 90.00563 * 15 5 4 19 19 C 1.38619 * 120.32383 * 90.00142 * 18 15 5 20 20 C 1.38595 * 118.49192 * 180.02562 * 19 18 15 21 21 C 1.39339 * 119.05442 * 359.97438 * 20 19 18 22 22 C 1.48072 * 119.72718 * 180.02562 * 21 20 19 23 23 O 1.21429 * 119.99654 * 359.97438 * 22 21 20 24 24 O 1.34674 * 120.00259 * 180.02562 * 22 21 20 25 25 N 1.32750 * 120.55048 * 359.97438 * 21 20 19 26 26 C 1.31504 * 121.64014 * 0.04255 * 25 21 20 27 27 H 1.08998 * 109.46709 * 224.85309 * 3 2 1 28 28 H 1.09001 * 109.47115 * 104.85787 * 3 2 1 29 29 H 1.08997 * 109.47364 * 59.99596 * 4 3 2 30 30 H 1.09001 * 109.47106 * 300.00125 * 4 3 2 31 31 H 1.09004 * 109.46938 * 35.00017 * 6 5 4 32 32 H 1.09001 * 109.46831 * 154.99592 * 6 5 4 33 33 H 0.96997 * 120.00167 * 180.02562 * 10 9 7 34 34 H 1.07998 * 120.75565 * 359.97438 * 19 18 15 35 35 H 1.08005 * 120.47199 * 179.72629 * 20 19 18 36 36 H 0.96704 * 117.00077 * 179.97438 * 24 22 21 37 37 H 1.07997 * 119.54520 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3915 0.3768 5 7 4.5837 -1.3907 0.3774 6 6 5.3168 -1.6136 -0.8712 7 6 5.4617 -3.0942 -1.1112 8 1 5.0486 -3.7987 -0.4046 9 6 6.1216 -3.5494 -2.2330 10 7 6.6242 -2.6915 -3.0937 11 14 6.3006 -5.3848 -2.5309 12 1 5.1407 -5.8739 -3.3189 13 1 7.5546 -5.6443 -3.2827 14 1 6.3486 -6.0954 -1.2277 15 16 5.4110 -1.1377 1.7895 16 8 4.5287 -0.4312 2.6505 17 8 6.6938 -0.6498 1.4211 18 6 5.6725 -2.7148 2.5304 19 6 6.8128 -3.4459 2.2361 20 6 6.9797 -4.6822 2.8400 21 6 6.0010 -5.1443 3.7175 22 6 6.1644 -6.4627 4.3714 23 8 7.1482 -7.1365 4.1417 24 8 5.2216 -6.9150 5.2201 25 7 4.9236 -4.4120 3.9730 26 6 4.7403 -3.2361 3.4136 27 1 2.9710 0.7294 0.7248 28 1 2.9713 0.2643 -0.9933 29 1 2.7557 -2.1201 -0.3479 30 1 2.7555 -1.6551 1.3701 31 1 4.7695 -1.1630 -1.6993 32 1 6.3048 -1.1588 -0.7986 33 1 7.0881 -3.0117 -3.8831 34 1 7.5540 -3.0613 1.5512 35 1 7.8541 -5.2806 2.6303 36 1 5.3722 -7.7815 5.6223 37 1 3.8509 -2.6689 3.6454 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:14 Heat of formation + Delta-G solvation = -93.430726 kcal Electronic energy + Delta-G solvation = -27098.580443 eV Core-core repulsion = 22968.705879 eV Total energy + Delta-G solvation = -4129.874564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92343 -39.54116 -37.32069 -36.96463 -36.39152 -35.82714 -35.59478 -32.99363 -32.87145 -31.88482 -30.82541 -27.15004 -25.94420 -24.03820 -23.85678 -22.39487 -22.03762 -18.98002 -18.63324 -17.94320 -17.66811 -17.45078 -16.89146 -16.61783 -16.51198 -16.02749 -15.59448 -14.96870 -14.77809 -14.64973 -14.10957 -14.04037 -13.90491 -13.62138 -13.34326 -13.07294 -12.78887 -12.66202 -12.39372 -12.14578 -11.85486 -11.82671 -11.82380 -11.60630 -11.32691 -11.25093 -11.17980 -11.10874 -10.76960 -10.67428 -10.41169 -10.17555 -10.04714 -9.80736 -9.67172 -8.67428 -8.44809 -6.29954 -4.37929 -0.07331 0.66814 1.04394 2.04428 2.55504 2.83114 2.91602 3.14087 3.16860 3.23167 3.25679 3.50205 3.91267 4.01062 4.19750 4.22184 4.34363 4.71181 4.78795 4.87728 4.99282 5.05771 5.10311 5.18907 5.44912 5.54933 5.62134 5.64855 5.79842 6.05932 6.10265 6.21843 6.25930 6.99136 7.15587 7.29417 7.30017 7.65361 7.66482 7.67036 7.91391 8.66810 9.30444 10.77671 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.008238 B = 0.005235 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.198382 B = 5347.758247 C = 7135.160326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.221 3.779 3 C -0.052 4.052 4 C 0.135 3.865 5 N -0.976 5.976 6 C 0.239 3.761 7 C -0.551 4.551 8 H 0.061 0.939 9 C 0.071 3.929 10 N -0.884 5.884 11 Si 0.888 3.112 12 H -0.279 1.279 13 H -0.283 1.283 14 H -0.273 1.273 15 S 2.692 3.308 16 O -0.964 6.964 17 O -0.943 6.943 18 C -0.695 4.695 19 C 0.043 3.957 20 C -0.125 4.125 21 C 0.128 3.872 22 C 0.543 3.457 23 O -0.500 6.500 24 O -0.490 6.490 25 N -0.452 5.452 26 C 0.188 3.812 27 H 0.113 0.887 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.267 0.733 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.413 0.587 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.898 -1.209 10.872 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.097 4.097 3 C -0.094 4.094 4 C 0.007 3.993 5 N -0.815 5.815 6 C 0.118 3.882 7 C -0.590 4.590 8 H 0.079 0.921 9 C -0.133 4.133 10 N -0.521 5.521 11 Si 0.715 3.285 12 H -0.205 1.205 13 H -0.209 1.209 14 H -0.198 1.198 15 S 2.778 3.222 16 O -0.955 6.955 17 O -0.933 6.933 18 C -0.780 4.780 19 C 0.017 3.983 20 C -0.146 4.146 21 C -0.008 4.008 22 C 0.384 3.616 23 O -0.387 6.387 24 O -0.300 6.300 25 N -0.164 5.164 26 C 0.026 3.974 27 H 0.131 0.869 28 H 0.138 0.862 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.188 0.812 35 H 0.177 0.823 36 H 0.272 0.728 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.591 -0.623 11.382 11.690 hybrid contribution 1.242 -2.268 -0.664 2.670 sum -1.349 -2.891 10.718 11.183 Atomic orbital electron populations 1.81193 1.13065 1.08721 1.09596 1.29057 0.95059 0.93017 0.92594 1.19877 0.81461 1.01463 1.06586 1.20981 0.80160 0.95019 1.03188 1.57456 1.13199 1.86709 1.24088 1.19423 0.92572 0.97063 0.79128 1.21484 1.37346 0.91915 1.08220 0.92052 1.24883 0.94943 0.97766 0.95726 1.69899 1.36169 1.34043 1.11980 0.86663 0.77917 0.85303 0.78627 1.20451 1.20876 1.19811 1.02197 0.73817 0.73495 0.72697 1.93558 1.66157 1.69367 1.66371 1.93596 1.40063 1.77167 1.82467 1.32676 1.04003 1.28219 1.13099 1.21512 0.94226 0.90972 0.91620 1.22216 1.00025 0.96881 0.95471 1.20206 0.92486 0.92396 0.95724 1.20498 0.79769 0.85093 0.76224 1.90926 1.30236 1.56913 1.60610 1.84691 1.48203 1.40828 1.56268 1.67733 1.19664 1.06070 1.22883 1.22600 0.96570 0.89987 0.88203 0.86871 0.86248 0.88475 0.90384 0.93285 0.92289 0.92313 0.81237 0.82339 0.72823 0.80335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.89 18.54 42.15 0.78 -6.11 16 2 C 0.22 2.83 15.43 -20.76 -0.32 2.51 16 3 C -0.05 -0.57 6.02 -29.52 -0.18 -0.75 16 4 C 0.13 1.72 5.30 -4.05 -0.02 1.69 16 5 N -0.98 -15.24 2.77 -115.67 -0.32 -15.56 16 6 C 0.24 4.75 5.44 -5.19 -0.03 4.72 16 7 C -0.55 -12.37 9.38 -34.44 -0.32 -12.70 16 8 H 0.06 1.35 7.81 -52.49 -0.41 0.94 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.88 -22.63 13.29 55.43 0.74 -21.89 16 11 Si 0.89 19.24 29.54 -169.99 -5.02 14.22 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 15 S 2.69 41.57 5.66 -107.50 -0.61 40.96 16 16 O -0.96 -14.62 16.27 -57.17 -0.93 -15.55 16 17 O -0.94 -17.18 15.90 -57.17 -0.91 -18.09 16 18 C -0.70 -10.27 6.00 -39.31 -0.24 -10.50 16 19 C 0.04 0.64 9.64 -39.31 -0.38 0.26 16 20 C -0.12 -1.76 9.63 -39.04 -0.38 -2.13 16 21 C 0.13 1.85 6.75 -83.03 -0.56 1.29 16 22 C 0.54 7.14 8.32 34.77 0.29 7.42 16 23 O -0.50 -7.33 17.11 -19.21 -0.33 -7.66 16 24 O -0.49 -5.05 13.24 -40.42 -0.54 -5.59 16 25 N -0.45 -6.64 10.12 -9.81 -0.10 -6.74 16 26 C 0.19 2.60 10.68 -17.56 -0.19 2.41 16 27 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.10 1.27 8.11 -51.93 -0.42 0.84 16 30 H 0.08 0.84 7.61 -51.93 -0.40 0.45 16 31 H 0.05 0.99 8.11 -51.93 -0.42 0.57 16 32 H 0.06 1.29 6.91 -51.93 -0.36 0.93 16 33 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 34 H 0.17 2.42 7.70 -52.49 -0.40 2.02 16 35 H 0.16 1.96 7.64 -52.48 -0.40 1.56 16 36 H 0.41 2.00 9.11 45.56 0.42 2.41 16 37 H 0.18 1.99 7.62 -52.49 -0.40 1.59 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -31.64 357.03 -7.05 -38.68 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.78 Total: 2.08 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.42 Total: -4.14 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 1.10 Total: -50.30 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.70 Total: -46.88 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Atomic # 16 Polarization: 41.57 SS G_CDS: -0.61 Total: 40.96 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.64 -7.05 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.748 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds