Wall clock time and date at job start Tue Mar 31 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00128 * 2 1 4 4 H 1.48500 * 109.46987 * 90.00029 * 3 2 1 5 5 H 1.48504 * 109.47361 * 210.00175 * 3 2 1 6 6 H 1.48496 * 109.47108 * 330.00179 * 3 2 1 7 7 C 1.38804 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99829 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99939 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99815 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47244 * 180.02562 * 10 9 7 12 12 O 1.20829 * 120.00079 * 0.02562 * 11 10 9 13 13 O 1.34228 * 120.00260 * 180.02562 * 11 10 9 14 14 C 1.45203 * 117.00021 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.43399 * 31.08869 * 14 13 11 16 16 C 1.54622 * 110.48316 * 153.77104 * 14 13 11 17 17 C 1.54486 * 101.76140 * 143.47680 * 16 14 13 18 18 N 1.46755 * 105.47334 * 334.58243 * 17 16 14 19 19 C 1.40038 * 124.34849 * 197.03515 * 18 17 16 20 20 C 1.38847 * 120.04204 * 173.91493 * 19 18 17 21 21 C 1.38117 * 119.95157 * 179.72378 * 20 19 18 22 22 C 1.38472 * 120.04411 * 0.55223 * 21 20 19 23 23 F 1.35098 * 119.95684 * 179.74788 * 22 21 20 24 24 C 1.38473 * 120.09058 * 359.72184 * 22 21 20 25 25 C 1.38115 * 120.04668 * 0.02562 * 24 22 21 26 26 C 1.34419 * 111.30391 * 17.02012 * 18 17 16 27 27 O 1.21288 * 124.94212 * 179.56009 * 26 18 17 28 28 H 0.96998 * 119.99626 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47005 * 300.00235 * 10 9 7 30 30 H 1.09004 * 109.46989 * 59.99943 * 10 9 7 31 31 H 1.08998 * 110.97579 * 261.59199 * 16 14 13 32 32 H 1.08997 * 110.97499 * 25.36065 * 16 14 13 33 33 H 1.09004 * 110.24414 * 215.58030 * 17 16 14 34 34 H 1.09001 * 110.31934 * 93.62372 * 17 16 14 35 35 H 1.08003 * 120.02468 * 0.02562 * 20 19 18 36 36 H 1.08000 * 119.97674 * 180.30350 * 21 20 19 37 37 H 1.07999 * 119.97734 * 180.02562 * 24 22 21 38 38 H 1.07995 * 120.02844 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4478 2.6526 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9846 -0.0009 11 6 5.5730 -3.2326 -0.0008 12 8 6.3412 -2.2999 -0.0005 13 8 6.0437 -4.4897 -0.0011 14 6 7.4865 -4.6533 -0.0016 15 1 7.9634 -3.8271 0.5258 16 6 7.8779 -6.0054 0.6383 17 6 9.0868 -6.4252 -0.2272 18 7 8.8975 -5.7515 -1.5172 19 6 9.5584 -6.1081 -2.6992 20 6 9.2199 -5.4934 -3.8973 21 6 9.8769 -5.8424 -5.0611 22 6 10.8644 -6.8127 -5.0354 23 9 11.5023 -7.1564 -6.1756 24 6 11.1994 -7.4310 -3.8425 25 6 10.5485 -7.0812 -2.6756 26 6 8.0081 -4.7484 -1.4184 27 8 7.6731 -4.0247 -2.3322 28 1 -0.4849 0.8401 0.0004 29 1 3.6439 -3.4314 0.8893 30 1 3.6433 -3.4318 -0.8907 31 1 8.1708 -5.8739 1.6799 32 1 7.0663 -6.7278 0.5512 33 1 9.0954 -7.5066 -0.3640 34 1 10.0168 -6.0969 0.2370 35 1 8.4469 -4.7394 -3.9184 36 1 9.6173 -5.3610 -5.9924 37 1 11.9702 -8.1872 -3.8245 38 1 10.8098 -7.5638 -1.7455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840201070.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:21 Heat of formation + Delta-G solvation = -142.449018 kcal Electronic energy + Delta-G solvation = -25702.561251 eV Core-core repulsion = 21550.641133 eV Total energy + Delta-G solvation = -4151.920118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.89057 -42.61150 -41.31509 -39.53509 -38.06159 -37.43984 -34.70878 -33.70966 -32.25468 -31.51274 -29.68272 -28.48901 -27.88919 -24.59487 -24.38810 -23.03845 -22.40254 -21.09752 -20.03875 -19.09577 -18.92523 -18.62491 -18.23376 -17.48182 -17.26275 -17.13647 -16.91530 -16.58432 -16.19495 -15.89476 -15.66260 -15.26565 -14.98574 -14.92406 -14.72869 -14.53803 -14.21468 -14.11835 -14.05241 -13.66011 -13.41968 -13.27186 -13.21467 -13.05298 -12.85314 -12.75332 -12.27515 -12.10089 -11.93054 -11.73036 -11.20054 -11.15441 -10.78656 -10.65443 -10.21935 -9.09105 -9.01098 -8.54406 -6.28069 -0.11217 0.14054 0.62728 0.95582 1.10240 1.29509 1.38598 1.47133 1.53256 1.85605 2.21945 2.54928 2.61939 2.83597 2.89357 3.21930 3.26702 3.45325 3.70901 3.81714 3.82196 3.86051 4.06398 4.14085 4.18826 4.27051 4.35126 4.41320 4.62458 4.85664 4.86464 4.90080 4.98236 5.06899 5.14515 5.17180 5.34241 5.68043 5.77020 5.87225 6.09539 6.49593 6.68870 6.89564 8.57828 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.002268 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.602519 B =12344.494075 C =13190.228240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.048 3.952 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.239 1.239 6 H -0.259 1.259 7 C -0.531 4.531 8 H 0.067 0.933 9 S -0.163 6.163 10 C -0.088 4.088 11 C 0.489 3.511 12 O -0.508 6.508 13 O -0.326 6.326 14 C 0.048 3.952 15 H 0.127 0.873 16 C -0.108 4.108 17 C 0.090 3.910 18 N -0.550 5.550 19 C 0.144 3.856 20 C -0.155 4.155 21 C -0.132 4.132 22 C 0.057 3.943 23 F -0.147 7.147 24 C -0.115 4.115 25 C -0.109 4.109 26 C 0.488 3.512 27 O -0.537 6.537 28 H 0.278 0.722 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.146 0.854 32 H 0.112 0.888 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.173 0.827 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.099 -21.650 0.735 33.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.163 1.163 6 H -0.183 1.183 7 C -0.678 4.678 8 H 0.085 0.915 9 S 0.063 5.937 10 C -0.236 4.236 11 C 0.330 3.670 12 O -0.395 6.395 13 O -0.242 6.242 14 C -0.011 4.011 15 H 0.144 0.856 16 C -0.145 4.145 17 C -0.029 4.029 18 N -0.274 5.274 19 C 0.050 3.950 20 C -0.175 4.175 21 C -0.151 4.151 22 C 0.037 3.963 23 F -0.126 7.126 24 C -0.134 4.134 25 C -0.129 4.129 26 C 0.277 3.723 27 O -0.414 6.414 28 H 0.088 0.912 29 H 0.153 0.847 30 H 0.137 0.863 31 H 0.164 0.836 32 H 0.131 0.869 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.190 0.810 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 26.736 -20.048 0.244 33.418 hybrid contribution -1.287 0.255 -0.801 1.537 sum 25.449 -19.793 -0.557 32.245 Atomic orbital electron populations 1.70007 1.07236 1.29148 1.48648 1.25540 0.95299 1.02226 0.92777 0.85894 0.80591 0.79626 0.80445 1.18170 1.16267 1.18290 1.22393 0.89613 0.96993 1.58823 0.91512 1.84708 1.07313 1.03993 1.97688 1.22931 0.91015 1.00687 1.09009 1.22974 0.91329 0.81107 0.71541 1.90670 1.59168 1.44496 1.45161 1.86630 1.24313 1.29324 1.83941 1.23749 0.79006 1.04694 0.93638 0.85587 1.22983 0.98464 0.91161 1.01940 1.22877 1.00182 1.00897 0.78981 1.45795 1.39651 1.31686 1.10315 1.18019 0.94954 0.97398 0.84612 1.21409 1.02135 1.02352 0.91632 1.21118 0.96436 0.98085 0.99501 1.17902 0.95984 0.99214 0.83158 1.91480 1.80644 1.91375 1.49130 1.21308 1.01405 1.00862 0.89801 1.20993 0.94491 0.96955 1.00482 1.21723 0.79444 0.79668 0.91510 1.90680 1.60209 1.45469 1.45039 0.91214 0.84703 0.86276 0.83637 0.86948 0.85054 0.86145 0.85033 0.84227 0.80983 0.80096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.26 13.97 21.65 0.30 -54.95 16 2 C 0.05 2.77 5.50 84.86 0.47 3.24 16 3 Si 0.91 44.60 27.74 68.60 1.90 46.50 16 4 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 6 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.53 -30.72 10.04 67.96 0.68 -30.04 16 8 H 0.07 4.07 8.03 -2.91 -0.02 4.04 16 9 S -0.16 -8.23 18.55 -56.49 -1.05 -9.28 16 10 C -0.09 -3.44 6.27 71.23 0.45 -2.99 16 11 C 0.49 17.73 7.97 71.23 0.57 18.30 16 12 O -0.51 -21.44 15.13 21.95 0.33 -21.10 16 13 O -0.33 -9.14 9.95 -48.63 -0.48 -9.62 16 14 C 0.05 1.00 3.22 30.59 0.10 1.10 16 15 H 0.13 2.70 7.26 -2.39 -0.02 2.68 16 16 C -0.11 -0.74 6.92 31.65 0.22 -0.52 16 17 C 0.09 0.39 6.27 86.84 0.54 0.94 16 18 N -0.55 -9.25 3.14 -627.63 -1.97 -11.22 16 19 C 0.14 2.60 6.60 38.12 0.25 2.85 16 20 C -0.15 -3.72 9.28 22.39 0.21 -3.51 16 21 C -0.13 -2.75 10.02 22.30 0.22 -2.52 16 22 C 0.06 1.01 7.30 22.38 0.16 1.17 16 23 F -0.15 -2.83 17.26 44.97 0.78 -2.05 16 24 C -0.11 -1.29 10.02 22.30 0.22 -1.07 16 25 C -0.11 -1.08 9.40 22.39 0.21 -0.87 16 26 C 0.49 12.84 7.61 87.90 0.67 13.51 16 27 O -0.54 -19.95 14.82 0.81 0.01 -19.94 16 28 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.14 4.61 8.14 -2.39 -0.02 4.60 16 30 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 31 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.11 0.69 8.11 -2.39 -0.02 0.67 16 33 H 0.13 -0.24 7.70 -2.38 -0.02 -0.26 16 34 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.13 4.07 5.27 -2.91 -0.02 4.05 16 36 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.18 0.17 7.01 -2.91 -0.02 0.15 16 Total: -1.00 -83.07 348.29 5.87 -77.20 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.07 Total: 4.89 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 4.97 Total: -0.42 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: -1.67 Total: -66.18 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.14 Total: -50.67 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.50 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.05 Total: -9.28 kcal Total: -83.07 5.87 -77.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840201070.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.246 kcal (2) G-P(sol) polarization free energy of solvation -83.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds