Wall clock time and date at job start Tue Mar 31 2020 23:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48494 * 109.47238 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47002 * 30.00292 * 3 2 1 6 6 H 1.48503 * 109.47014 * 150.00019 * 3 2 1 7 7 C 1.37880 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99953 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00247 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47297 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47067 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54525 * 68.38095 * 11 10 9 13 13 O 1.42101 * 110.54535 * 291.62412 * 11 10 9 14 14 N 1.65604 * 104.44968 * 179.97438 * 11 10 9 15 15 C 1.34788 * 119.99656 * 64.99998 * 14 11 10 16 16 O 1.21280 * 119.99823 * 0.02562 * 15 14 11 17 17 C 1.50700 * 119.99807 * 179.97438 * 15 14 11 18 18 H 1.08995 * 109.67961 * 304.49857 * 17 15 14 19 19 C 1.53410 * 109.67410 * 64.99988 * 17 15 14 20 20 C 1.53073 * 108.29361 * 184.41737 * 19 17 15 21 21 C 1.50774 * 109.67365 * 311.71873 * 20 19 17 22 22 C 1.38501 * 118.76461 * 198.17098 * 21 20 19 23 23 C 1.38100 * 120.31414 * 180.66952 * 22 21 20 24 24 C 1.38294 * 119.97920 * 359.44731 * 23 22 21 25 25 C 1.37966 * 119.96093 * 0.19094 * 24 23 22 26 26 C 1.38366 * 121.39628 * 18.09998 * 21 20 19 27 27 O 1.35837 * 121.80496 * 359.18657 * 26 21 20 28 28 H 0.96993 * 119.99987 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46848 * 59.99794 * 9 7 2 30 30 H 1.08999 * 109.47166 * 300.00792 * 9 7 2 31 31 H 1.08998 * 109.46950 * 60.00189 * 10 9 7 32 32 H 1.08996 * 109.47160 * 300.00295 * 10 9 7 33 33 H 0.97000 * 120.00502 * 244.99980 * 14 11 10 34 34 H 1.09007 * 109.69750 * 64.72405 * 19 17 15 35 35 H 1.08991 * 109.70500 * 304.12250 * 19 17 15 36 36 H 1.09005 * 109.44088 * 191.65462 * 20 19 17 37 37 H 1.09005 * 109.40216 * 71.75936 * 20 19 17 38 38 H 1.08007 * 119.84523 * 0.39958 * 22 21 20 39 39 H 1.08002 * 120.01342 * 179.73295 * 23 22 21 40 40 H 1.08005 * 120.01704 * 180.20984 * 24 23 22 41 41 H 1.07997 * 119.89209 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6364 0.0001 11 16 5.8356 -2.6363 -0.0014 12 8 6.3353 -2.1455 1.2350 13 8 6.3333 -2.1464 -1.2390 14 7 6.2490 -4.2399 -0.0004 15 6 5.9386 -5.0165 -1.0575 16 8 5.3570 -4.5406 -2.0095 17 6 6.3152 -6.4756 -1.0569 18 1 7.3872 -6.5779 -0.8886 19 6 5.5464 -7.2070 0.0510 20 6 6.0330 -8.6577 0.0963 21 6 6.0442 -9.2331 -1.2972 22 6 6.0787 -10.6092 -1.4498 23 6 6.1038 -11.1702 -2.7115 24 6 6.0829 -10.3570 -3.8299 25 6 6.0410 -8.9857 -3.6840 26 6 6.0193 -8.4169 -2.4143 27 8 5.9673 -7.0635 -2.3110 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6795 0.8895 30 1 3.8746 -0.6806 -0.8904 31 1 3.6580 -3.1504 -0.8897 32 1 3.6587 -3.1501 0.8902 33 1 6.7144 -4.6204 0.7608 34 1 4.4785 -7.1844 -0.1663 35 1 5.7370 -6.7254 1.0100 36 1 5.3646 -9.2450 0.7260 37 1 7.0412 -8.6887 0.5097 38 1 6.0905 -11.2466 -0.5780 39 1 6.1351 -12.2438 -2.8248 40 1 6.0991 -10.7952 -4.8169 41 1 6.0251 -8.3517 -4.5582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842329349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:21 Heat of formation + Delta-G solvation = -124.163780 kcal Electronic energy + Delta-G solvation = -26938.575370 eV Core-core repulsion = 22910.908464 eV Total energy + Delta-G solvation = -4027.666906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41798 -39.90581 -37.69283 -36.90739 -35.84135 -35.14105 -34.34139 -33.98556 -31.52944 -31.23987 -30.54261 -27.08893 -26.03385 -24.27950 -22.84108 -22.45758 -21.35132 -20.43850 -19.62541 -18.46439 -18.28710 -17.61214 -17.09659 -16.78620 -16.03956 -15.91574 -15.52420 -15.27341 -15.04275 -14.72426 -14.58715 -14.35766 -14.21657 -13.81314 -13.67522 -13.52068 -13.00902 -12.84990 -12.57540 -12.33436 -11.98632 -11.93391 -11.91241 -11.83011 -11.66868 -11.45149 -11.33152 -11.27513 -11.05634 -10.89947 -10.46478 -10.32425 -10.11520 -9.67387 -9.38558 -9.14230 -8.66962 -8.50941 -6.17062 -4.18764 0.25082 0.96130 1.08369 1.79939 2.20416 2.93128 3.26810 3.33702 3.36782 3.38705 3.72346 3.89443 3.99921 4.25715 4.31099 4.35108 4.39420 4.45279 4.64734 4.71328 4.74476 4.82524 5.03601 5.09875 5.13978 5.17553 5.31878 5.41032 5.45147 5.48548 5.52702 5.68769 5.93364 6.09308 6.19476 6.20838 6.32986 6.44052 6.76548 6.89543 7.04051 7.24687 7.52103 8.35266 8.83834 9.41829 10.95253 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002670 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.495290 B =10482.606269 C =11013.582239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.870 3.130 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.568 4.568 11 S 2.563 3.437 12 O -0.949 6.949 13 O -0.934 6.934 14 N -1.053 6.053 15 C 0.541 3.459 16 O -0.459 6.459 17 C 0.076 3.924 18 H 0.108 0.892 19 C -0.156 4.156 20 C -0.075 4.075 21 C -0.164 4.164 22 C -0.084 4.084 23 C -0.152 4.152 24 C -0.087 4.087 25 C -0.143 4.143 26 C 0.133 3.867 27 O -0.287 6.287 28 H 0.267 0.733 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.430 0.570 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.672 -23.561 0.464 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.703 4.703 11 S 2.663 3.337 12 O -0.940 6.940 13 O -0.924 6.924 14 N -0.816 5.816 15 C 0.324 3.676 16 O -0.327 6.327 17 C 0.014 3.986 18 H 0.126 0.874 19 C -0.194 4.194 20 C -0.112 4.112 21 C -0.164 4.164 22 C -0.102 4.102 23 C -0.171 4.171 24 C -0.105 4.105 25 C -0.161 4.161 26 C 0.088 3.912 27 O -0.200 6.200 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.265 0.735 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.692 -22.262 -0.433 27.240 hybrid contribution 0.084 0.198 0.600 0.637 sum 15.776 -22.064 0.167 27.124 Atomic orbital electron populations 1.69874 1.06200 1.27299 1.49824 1.24974 0.94832 0.99150 0.94087 0.86922 0.80627 0.83667 0.79211 1.19584 1.20712 1.18643 1.20801 0.87536 0.95028 1.52467 0.90308 1.19439 1.00104 0.86883 0.98056 1.30182 1.18242 1.10089 1.11739 1.06823 0.80269 0.71990 0.74618 1.93607 1.79547 1.75872 1.44976 1.93617 1.78515 1.75899 1.44397 1.55371 1.67043 1.32542 1.26634 1.19888 0.78023 0.88101 0.81564 1.90969 1.35957 1.73974 1.31785 1.22276 1.01014 0.90249 0.85035 0.87414 1.22304 1.02145 0.96288 0.98644 1.20489 1.02718 0.94549 0.93410 1.19831 1.07835 0.94277 0.94504 1.20885 0.98355 0.93254 0.97728 1.21048 1.03604 0.99961 0.92443 1.20962 0.98031 0.92411 0.99121 1.20666 1.04911 0.95232 0.95332 1.18741 0.97096 0.81594 0.93753 1.86087 1.83738 1.17688 1.32526 0.92322 0.94790 0.95074 0.84437 0.85261 0.73503 0.88876 0.88492 0.89099 0.89867 0.85714 0.85825 0.85277 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.01 -0.13 4.05 -27.89 -0.11 -0.24 16 10 C -0.57 -10.59 5.82 37.16 0.22 -10.37 16 11 S 2.56 42.73 5.11 -107.50 -0.55 42.18 16 12 O -0.95 -16.92 18.08 -57.54 -1.04 -17.96 16 13 O -0.93 -19.12 17.04 -64.79 -1.10 -20.22 16 14 N -1.05 -11.95 5.53 31.22 0.17 -11.78 16 15 C 0.54 7.06 6.93 -10.98 -0.08 6.98 16 16 O -0.46 -8.18 14.62 -22.89 -0.33 -8.52 16 17 C 0.08 0.74 3.21 -27.67 -0.09 0.65 16 18 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 19 C -0.16 -1.10 5.46 -26.48 -0.14 -1.25 16 20 C -0.07 -0.45 5.86 -27.81 -0.16 -0.61 16 21 C -0.16 -1.40 5.75 -104.44 -0.60 -2.00 16 22 C -0.08 -0.61 9.66 -39.53 -0.38 -1.00 16 23 C -0.15 -1.09 10.04 -39.61 -0.40 -1.49 16 24 C -0.09 -0.68 10.04 -39.66 -0.40 -1.08 16 25 C -0.14 -1.42 9.94 -39.34 -0.39 -1.81 16 26 C 0.13 1.44 6.47 -39.20 -0.25 1.19 16 27 O -0.29 -3.62 9.47 -38.98 -0.37 -3.99 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 30 H 0.03 0.74 7.57 -51.93 -0.39 0.35 16 31 H 0.14 2.59 7.19 -51.92 -0.37 2.22 16 32 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 33 H 0.43 2.81 8.54 -34.48 -0.29 2.52 16 34 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.10 0.41 7.85 -51.93 -0.41 0.00 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 39 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -38.24 357.99 -10.18 -48.42 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.23 Total: -0.06 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -3.22 Total: -23.95 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.95 Total: -38.14 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -2.85 Total: -50.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: 42.73 SS G_CDS: -0.55 Total: 42.18 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.24 -10.18 -48.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842329349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.747 kcal (2) G-P(sol) polarization free energy of solvation -38.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds