Wall clock time and date at job start Tue Mar 31 2020 23:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99756 * 2 1 4 4 H 1.48494 * 109.47238 * 269.99855 * 3 2 1 5 5 H 1.48506 * 109.47002 * 30.00292 * 3 2 1 6 6 H 1.48503 * 109.47014 * 150.00019 * 3 2 1 7 7 C 1.37880 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99953 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00247 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47297 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.47067 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54525 * 68.38095 * 11 10 9 13 13 O 1.42101 * 110.54535 * 291.62412 * 11 10 9 14 14 N 1.65604 * 104.44968 * 179.97438 * 11 10 9 15 15 C 1.34788 * 119.99656 * 64.99998 * 14 11 10 16 16 O 1.21280 * 119.99823 * 0.02562 * 15 14 11 17 17 C 1.50700 * 119.99807 * 179.97438 * 15 14 11 18 18 H 1.08995 * 109.67961 * 304.49857 * 17 15 14 19 19 C 1.53410 * 109.67410 * 64.99988 * 17 15 14 20 20 C 1.53073 * 108.29361 * 184.41737 * 19 17 15 21 21 C 1.50774 * 109.67365 * 311.71873 * 20 19 17 22 22 C 1.38501 * 118.76461 * 198.17098 * 21 20 19 23 23 C 1.38100 * 120.31414 * 180.66952 * 22 21 20 24 24 C 1.38294 * 119.97920 * 359.44731 * 23 22 21 25 25 C 1.37966 * 119.96093 * 0.19094 * 24 23 22 26 26 C 1.38366 * 121.39628 * 18.09998 * 21 20 19 27 27 O 1.35837 * 121.80496 * 359.18657 * 26 21 20 28 28 H 0.96993 * 119.99987 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46848 * 59.99794 * 9 7 2 30 30 H 1.08999 * 109.47166 * 300.00792 * 9 7 2 31 31 H 1.08998 * 109.46950 * 60.00189 * 10 9 7 32 32 H 1.08996 * 109.47160 * 300.00295 * 10 9 7 33 33 H 0.97000 * 120.00502 * 244.99980 * 14 11 10 34 34 H 1.09007 * 109.69750 * 64.72405 * 19 17 15 35 35 H 1.08991 * 109.70500 * 304.12250 * 19 17 15 36 36 H 1.09005 * 109.44088 * 191.65462 * 20 19 17 37 37 H 1.09005 * 109.40216 * 71.75936 * 20 19 17 38 38 H 1.08007 * 119.84523 * 0.39958 * 22 21 20 39 39 H 1.08002 * 120.01342 * 179.73295 * 23 22 21 40 40 H 1.08005 * 120.01704 * 180.20984 * 24 23 22 41 41 H 1.07997 * 119.89209 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0217 -2.6364 0.0001 11 16 5.8356 -2.6363 -0.0014 12 8 6.3353 -2.1455 1.2350 13 8 6.3333 -2.1464 -1.2390 14 7 6.2490 -4.2399 -0.0004 15 6 5.9386 -5.0165 -1.0575 16 8 5.3570 -4.5406 -2.0095 17 6 6.3152 -6.4756 -1.0569 18 1 7.3872 -6.5779 -0.8886 19 6 5.5464 -7.2070 0.0510 20 6 6.0330 -8.6577 0.0963 21 6 6.0442 -9.2331 -1.2972 22 6 6.0787 -10.6092 -1.4498 23 6 6.1038 -11.1702 -2.7115 24 6 6.0829 -10.3570 -3.8299 25 6 6.0410 -8.9857 -3.6840 26 6 6.0193 -8.4169 -2.4143 27 8 5.9673 -7.0635 -2.3110 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6795 0.8895 30 1 3.8746 -0.6806 -0.8904 31 1 3.6580 -3.1504 -0.8897 32 1 3.6587 -3.1501 0.8902 33 1 6.7144 -4.6204 0.7608 34 1 4.4785 -7.1844 -0.1663 35 1 5.7370 -6.7254 1.0100 36 1 5.3646 -9.2450 0.7260 37 1 7.0412 -8.6887 0.5097 38 1 6.0905 -11.2466 -0.5780 39 1 6.1351 -12.2438 -2.8248 40 1 6.0991 -10.7952 -4.8169 41 1 6.0251 -8.3517 -4.5582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842329349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:20 Heat of formation + Delta-G solvation = -152.389163 kcal Electronic energy + Delta-G solvation = -26939.799315 eV Core-core repulsion = 22910.908464 eV Total energy + Delta-G solvation = -4028.890850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.21235 -40.85363 -38.48341 -38.26030 -37.32030 -36.12702 -35.92001 -35.09865 -33.54115 -31.90439 -31.14011 -28.04891 -27.71444 -24.87107 -23.59225 -23.41741 -23.10261 -21.09385 -20.87387 -19.66259 -19.32367 -18.99898 -18.36570 -17.67030 -17.30721 -17.00744 -16.64184 -16.38206 -16.30722 -15.96946 -15.41947 -15.35219 -15.23692 -14.93417 -14.85206 -14.39005 -14.14587 -13.96646 -13.84441 -13.47340 -13.44817 -13.33035 -13.14508 -13.06487 -12.98097 -12.44098 -12.38784 -12.30168 -12.18052 -12.01125 -11.96444 -11.73449 -11.52976 -11.30878 -11.18171 -10.86633 -9.71821 -9.15513 -8.38404 -6.45082 -1.12972 0.37847 0.45373 0.75612 1.10841 1.32062 1.33000 1.43117 2.06600 2.28265 2.45019 2.75846 2.91499 2.95323 3.07937 3.39487 3.64660 3.73957 3.79489 3.84445 3.88195 3.95987 4.15603 4.24448 4.34309 4.48931 4.49677 4.60854 4.63659 4.86996 4.98009 4.99107 5.03193 5.04764 5.15687 5.33727 5.43449 5.49886 5.52982 5.61520 5.85865 6.13545 6.22512 6.41814 6.60583 7.19067 8.77331 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.002670 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.495290 B =10482.606269 C =11013.582239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.013 3.987 3 Si 0.927 3.073 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.243 1.243 7 C -0.530 4.530 8 H 0.046 0.954 9 C -0.015 4.015 10 C -0.581 4.581 11 S 2.605 3.395 12 O -0.955 6.955 13 O -0.972 6.972 14 N -1.028 6.028 15 C 0.541 3.459 16 O -0.513 6.513 17 C 0.076 3.924 18 H 0.143 0.857 19 C -0.155 4.155 20 C -0.072 4.072 21 C -0.169 4.169 22 C -0.087 4.087 23 C -0.153 4.153 24 C -0.093 4.093 25 C -0.169 4.169 26 C 0.103 3.897 27 O -0.323 6.323 28 H 0.271 0.729 29 H 0.045 0.955 30 H 0.028 0.972 31 H 0.128 0.872 32 H 0.155 0.845 33 H 0.455 0.545 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.122 -25.367 2.526 31.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.186 4.186 3 Si 0.750 3.250 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.166 1.166 7 C -0.569 4.569 8 H 0.065 0.935 9 C -0.054 4.054 10 C -0.713 4.713 11 S 2.702 3.298 12 O -0.945 6.945 13 O -0.962 6.962 14 N -0.796 5.796 15 C 0.327 3.673 16 O -0.385 6.385 17 C 0.015 3.985 18 H 0.160 0.840 19 C -0.193 4.193 20 C -0.108 4.108 21 C -0.170 4.170 22 C -0.104 4.104 23 C -0.171 4.171 24 C -0.111 4.111 25 C -0.188 4.188 26 C 0.058 3.942 27 O -0.238 6.238 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.147 0.853 32 H 0.173 0.827 33 H 0.296 0.704 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.172 0.828 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.152 -24.085 1.675 30.206 hybrid contribution -0.689 0.567 -0.070 0.895 sum 17.463 -23.518 1.606 29.336 Atomic orbital electron populations 1.70008 1.07973 1.28505 1.51453 1.25907 0.95695 1.03174 0.93816 0.85991 0.80167 0.79106 0.79777 1.19020 1.19593 1.16578 1.21126 0.90136 0.93908 1.51714 0.93523 1.19385 0.97355 0.90422 0.98268 1.30189 1.21269 1.07122 1.12723 1.05332 0.78318 0.72679 0.73433 1.93597 1.78920 1.76958 1.45015 1.93576 1.78523 1.77700 1.46376 1.54747 1.66631 1.30754 1.27503 1.20658 0.76483 0.89567 0.80567 1.90954 1.38531 1.75057 1.33918 1.22508 1.03230 0.87481 0.85321 0.83958 1.22413 1.00617 0.97312 0.98965 1.20609 1.04688 0.93435 0.92078 1.20192 1.06880 0.94745 0.95147 1.21282 0.97250 0.93076 0.98836 1.21438 1.02217 1.01231 0.92196 1.21231 0.97600 0.91621 1.00632 1.20837 1.06465 0.96318 0.95195 1.19028 0.99125 0.81121 0.94904 1.86016 1.84562 1.19020 1.34170 0.92030 0.93649 0.95383 0.85329 0.82723 0.70390 0.90821 0.84969 0.87233 0.87167 0.82841 0.83283 0.83483 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 2 C 0.01 0.75 5.47 84.66 0.46 1.21 16 3 Si 0.93 44.12 27.47 68.60 1.88 46.00 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.24 -10.68 6.54 99.48 0.65 -10.03 16 7 C -0.53 -30.57 9.66 25.60 0.25 -30.32 16 8 H 0.05 2.89 7.99 -2.91 -0.02 2.87 16 9 C -0.02 -0.72 4.05 29.85 0.12 -0.60 16 10 C -0.58 -21.57 5.82 71.98 0.42 -21.15 16 11 S 2.60 83.31 5.11 -56.49 -0.29 83.02 16 12 O -0.95 -31.58 18.08 -127.65 -2.31 -33.89 16 13 O -0.97 -39.41 17.04 -120.72 -2.06 -41.47 16 14 N -1.03 -21.11 5.53 -173.52 -0.96 -22.07 16 15 C 0.54 13.68 6.93 87.66 0.61 14.28 16 16 O -0.51 -18.85 14.62 24.17 0.35 -18.50 16 17 C 0.08 1.36 3.21 29.99 0.10 1.45 16 18 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 19 C -0.16 -1.77 5.46 30.76 0.17 -1.60 16 20 C -0.07 -0.59 5.86 29.90 0.18 -0.41 16 21 C -0.17 -2.54 5.75 -19.75 -0.11 -2.65 16 22 C -0.09 -1.01 9.66 22.30 0.22 -0.79 16 23 C -0.15 -1.83 10.04 22.25 0.22 -1.61 16 24 C -0.09 -1.39 10.04 22.22 0.22 -1.17 16 25 C -0.17 -3.50 9.94 22.42 0.22 -3.28 16 26 C 0.10 2.22 6.47 22.52 0.15 2.36 16 27 O -0.32 -8.31 9.47 -72.83 -0.69 -9.00 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.05 2.04 7.20 -2.39 -0.02 2.02 16 30 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 31 H 0.13 5.02 7.19 -2.39 -0.02 5.00 16 32 H 0.15 4.77 8.14 -2.39 -0.02 4.75 16 33 H 0.45 4.26 8.54 -96.74 -0.83 3.43 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.13 0.51 7.85 -2.39 -0.02 0.49 16 36 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 38 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.12 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -87.27 357.99 -0.37 -87.64 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.18 Total: 10.84 kcal Atomic # 6 Polarization: -47.49 SS G_CDS: 3.21 Total: -44.28 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -0.66 Total: -80.37 kcal Atomic # 8 Polarization: -98.16 SS G_CDS: -4.70 Total: -102.86 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: 83.31 SS G_CDS: -0.29 Total: 83.02 kcal Total: -87.27 -0.37 -87.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842329349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.751 kcal (2) G-P(sol) polarization free energy of solvation -87.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds