Wall clock time and date at job start Tue Mar 31 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47291 * 270.00393 * 3 2 1 5 5 H 1.48499 * 109.47099 * 30.00258 * 3 2 1 6 6 H 1.48505 * 109.47299 * 150.00426 * 3 2 1 7 7 C 1.37876 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00417 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00074 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47509 * 180.02562 * 9 7 2 11 11 O 1.42100 * 110.54140 * 68.37259 * 10 9 7 12 12 O 1.42102 * 110.54001 * 291.62895 * 10 9 7 13 13 N 1.65597 * 104.45266 * 179.97438 * 10 9 7 14 14 C 1.34780 * 120.00013 * 65.00119 * 13 10 9 15 15 O 1.21286 * 119.99613 * 359.97438 * 14 13 10 16 16 C 1.50700 * 120.00160 * 180.02562 * 14 13 10 17 17 C 1.50697 * 109.46933 * 179.97438 * 16 14 13 18 18 C 1.38286 * 120.01378 * 270.01861 * 17 16 14 19 19 C 1.37965 * 119.96674 * 180.02562 * 18 17 16 20 20 C 1.39151 * 120.21192 * 0.04617 * 19 18 17 21 21 C 1.38369 * 119.69228 * 359.81552 * 20 19 18 22 22 C 1.38106 * 120.00599 * 90.00064 * 17 16 14 23 23 C 1.50770 * 121.41162 * 180.31142 * 21 20 19 24 24 C 1.53075 * 109.68771 * 342.21296 * 23 21 20 25 25 C 1.53407 * 108.29127 * 48.18900 * 24 23 21 26 26 O 1.35844 * 118.50197 * 179.75921 * 20 19 18 27 27 H 0.96995 * 119.99806 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47066 * 60.00150 * 9 7 2 29 29 H 1.08998 * 109.47132 * 300.00011 * 9 7 2 30 30 H 0.96996 * 119.99950 * 244.99980 * 13 10 9 31 31 H 1.09000 * 109.46891 * 59.99300 * 16 14 13 32 32 H 1.09002 * 109.46783 * 299.99441 * 16 14 13 33 33 H 1.08005 * 120.01819 * 0.06473 * 18 17 16 34 34 H 1.08000 * 119.89633 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.84627 * 0.02562 * 22 17 16 36 36 H 1.08998 * 109.44213 * 102.25510 * 23 21 20 37 37 H 1.09001 * 109.44083 * 222.14299 * 23 21 20 38 38 H 1.08997 * 109.66773 * 288.50700 * 24 23 21 39 39 H 1.08997 * 109.72892 * 167.90601 * 24 23 21 40 40 H 1.09002 * 109.68065 * 175.58527 * 25 24 23 41 41 H 1.08999 * 109.68092 * 55.07058 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.1266 -3.9383 1.2364 12 8 3.1266 -3.9383 -1.2375 13 7 1.4795 -5.2341 0.0002 14 6 0.6884 -5.5033 -1.0573 15 8 0.6723 -4.7519 -2.0093 16 6 -0.1768 -6.7371 -1.0565 17 6 -0.9576 -6.8039 -2.3437 18 6 -2.2040 -6.2110 -2.4283 19 6 -2.9182 -6.2733 -3.6070 20 6 -2.3889 -6.9321 -4.7125 21 6 -1.1402 -7.5220 -4.6258 22 6 -0.4283 -7.4571 -3.4394 23 6 -0.5268 -8.2395 -5.8014 24 6 -1.6140 -8.5744 -6.8256 25 6 -2.4518 -7.3125 -7.0685 26 8 -3.1240 -6.9765 -5.8540 27 1 -0.4849 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 1.4922 -5.8348 0.7617 31 1 -0.8678 -6.6957 -0.2145 32 1 0.4528 -7.6223 -0.9667 33 1 -2.6180 -5.6989 -1.5721 34 1 -3.8917 -5.8102 -3.6717 35 1 0.5453 -7.9195 -3.3709 36 1 0.2236 -7.5996 -6.2657 37 1 -0.0554 -9.1605 -5.4585 38 1 -2.2509 -9.3694 -6.4378 39 1 -1.1531 -8.8949 -7.7599 40 1 -3.1843 -7.5036 -7.8527 41 1 -1.8004 -6.4912 -7.3669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842792993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:16 Heat of formation + Delta-G solvation = -138.024925 kcal Electronic energy + Delta-G solvation = -26900.170458 eV Core-core repulsion = 22871.902488 eV Total energy + Delta-G solvation = -4028.267970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83749 -39.78108 -37.65657 -36.22765 -35.16188 -34.48619 -34.07653 -33.34330 -32.40253 -30.56693 -29.04959 -27.96123 -25.65584 -23.67531 -23.48921 -22.62895 -21.41739 -19.70218 -19.12143 -17.87029 -17.59602 -17.13102 -16.88273 -16.44786 -15.92619 -15.70386 -15.06787 -14.85642 -14.64418 -14.57815 -14.28545 -14.19325 -14.01007 -13.90832 -13.36683 -13.24795 -12.59512 -12.51533 -12.24206 -12.16249 -11.96301 -11.65361 -11.47548 -11.45772 -11.28801 -11.18865 -11.15645 -10.92115 -10.90681 -10.64482 -10.56842 -10.46231 -9.98527 -9.78536 -9.15856 -8.80272 -8.69987 -8.10643 -6.32353 -4.43405 1.01959 1.30591 1.36552 2.43096 3.11738 3.22621 3.23381 3.28612 3.33442 3.68688 4.23486 4.36331 4.45700 4.49777 4.53267 4.61616 4.71886 4.73338 4.91228 5.00533 5.04372 5.17650 5.18543 5.21163 5.29809 5.33653 5.38242 5.42811 5.51709 5.57898 5.76736 5.80279 6.00436 6.18755 6.34837 6.54735 6.59155 6.71874 6.77670 7.02978 7.36153 7.42590 7.74099 7.82694 8.57662 9.23870 10.79459 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.002935 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.396377 B = 9539.351473 C =10458.064069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.070 0.930 9 C -0.404 4.404 10 S 2.554 3.446 11 O -0.971 6.971 12 O -0.954 6.954 13 N -1.062 6.062 14 C 0.529 3.471 15 O -0.477 6.477 16 C -0.098 4.098 17 C -0.102 4.102 18 C -0.069 4.069 19 C -0.145 4.145 20 C 0.130 3.870 21 C -0.161 4.161 22 C -0.067 4.067 23 C -0.078 4.078 24 C -0.159 4.159 25 C 0.060 3.940 26 O -0.318 6.318 27 H 0.269 0.731 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.424 0.576 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.049 -19.480 -7.609 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.574 4.574 8 H 0.088 0.912 9 C -0.541 4.541 10 S 2.656 3.344 11 O -0.961 6.961 12 O -0.944 6.944 13 N -0.822 5.822 14 C 0.314 3.686 15 O -0.347 6.347 16 C -0.140 4.140 17 C -0.102 4.102 18 C -0.087 4.087 19 C -0.164 4.164 20 C 0.086 3.914 21 C -0.162 4.162 22 C -0.086 4.086 23 C -0.115 4.115 24 C -0.196 4.196 25 C -0.015 4.015 26 O -0.232 6.232 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.258 0.742 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.141 0.859 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.459 -18.856 -8.379 21.621 hybrid contribution 0.029 0.657 0.398 0.769 sum -6.430 -18.199 -7.980 20.886 Atomic orbital electron populations 1.69954 1.06253 1.27735 1.47306 1.24918 0.95039 0.99572 0.93400 0.86342 0.79947 0.81669 0.78810 1.19844 1.20587 1.19078 1.20283 0.92725 0.88506 1.55922 0.91175 1.27596 1.09885 1.09225 1.07352 1.07095 0.77274 0.76018 0.74012 1.93517 1.71259 1.86020 1.45336 1.93527 1.70872 1.85259 1.44747 1.55501 1.56337 1.43816 1.26575 1.20513 0.79065 0.87764 0.81215 1.90939 1.63044 1.48359 1.32359 1.20728 0.98606 0.96854 0.97796 1.19120 0.95216 1.01143 0.94759 1.20809 0.93693 0.96809 0.97363 1.20529 1.01915 1.02053 0.91861 1.18669 0.90651 0.95511 0.86605 1.19693 0.95579 1.03978 0.96933 1.20704 0.98544 0.98003 0.91316 1.20465 0.97564 1.00196 0.93296 1.22225 0.98532 0.98468 1.00397 1.22956 0.97001 0.96696 0.84879 1.85977 1.37106 1.85613 1.14498 0.92159 0.88364 0.89741 0.74192 0.87038 0.87400 0.85136 0.85138 0.85874 0.90316 0.90083 0.90528 0.89827 0.87672 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.18 13.29 55.43 0.74 -24.45 16 2 C 0.08 2.17 5.46 -17.82 -0.10 2.07 16 3 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.53 -15.09 9.13 -34.44 -0.31 -15.40 16 8 H 0.07 1.93 7.71 -52.49 -0.40 1.53 16 9 C -0.40 -10.06 5.64 36.01 0.20 -9.86 16 10 S 2.55 55.06 5.03 -107.50 -0.54 54.52 16 11 O -0.97 -22.08 18.08 -57.54 -1.04 -23.12 16 12 O -0.95 -23.80 17.04 -64.78 -1.10 -24.90 16 13 N -1.06 -16.32 5.60 31.22 0.17 -16.15 16 14 C 0.53 8.38 7.56 -10.98 -0.08 8.29 16 15 O -0.48 -9.92 14.14 -11.55 -0.16 -10.08 16 16 C -0.10 -1.04 5.83 -29.04 -0.17 -1.21 16 17 C -0.10 -1.27 4.37 -104.65 -0.46 -1.73 16 18 C -0.07 -0.87 9.70 -39.66 -0.38 -1.25 16 19 C -0.15 -1.87 9.94 -39.34 -0.39 -2.26 16 20 C 0.13 1.70 6.47 -39.19 -0.25 1.45 16 21 C -0.16 -1.95 5.75 -104.44 -0.60 -2.55 16 22 C -0.07 -0.83 9.32 -39.53 -0.37 -1.20 16 23 C -0.08 -0.71 5.86 -27.81 -0.16 -0.87 16 24 C -0.16 -1.17 6.20 -26.48 -0.16 -1.34 16 25 C 0.06 0.51 7.02 37.37 0.26 0.78 16 26 O -0.32 -3.85 10.27 -19.25 -0.20 -4.05 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.10 2.58 7.19 -51.92 -0.37 2.20 16 29 H 0.08 2.02 8.14 -51.92 -0.42 1.59 16 30 H 0.42 4.49 8.79 -34.47 -0.30 4.18 16 31 H 0.11 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.11 0.81 8.09 -51.93 -0.42 0.39 16 33 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -38.10 361.89 -9.97 -48.06 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.28 Total: 3.50 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: -2.98 Total: -25.08 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.91 Total: -40.59 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -2.51 Total: -62.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 55.06 SS G_CDS: -0.54 Total: 54.52 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.10 -9.97 -48.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842792993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.961 kcal (2) G-P(sol) polarization free energy of solvation -38.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds