Wall clock time and date at job start Tue Mar 31 2020 22:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99977 * 2 1 4 4 H 1.48502 * 109.47291 * 270.00393 * 3 2 1 5 5 H 1.48499 * 109.47099 * 30.00258 * 3 2 1 6 6 H 1.48505 * 109.47299 * 150.00426 * 3 2 1 7 7 C 1.37876 * 120.00091 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00417 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00074 * 359.97438 * 7 2 1 10 10 S 1.81398 * 109.47509 * 180.02562 * 9 7 2 11 11 O 1.42100 * 110.54140 * 68.37259 * 10 9 7 12 12 O 1.42102 * 110.54001 * 291.62895 * 10 9 7 13 13 N 1.65597 * 104.45266 * 179.97438 * 10 9 7 14 14 C 1.34780 * 120.00013 * 65.00119 * 13 10 9 15 15 O 1.21286 * 119.99613 * 359.97438 * 14 13 10 16 16 C 1.50700 * 120.00160 * 180.02562 * 14 13 10 17 17 C 1.50697 * 109.46933 * 179.97438 * 16 14 13 18 18 C 1.38286 * 120.01378 * 270.01861 * 17 16 14 19 19 C 1.37965 * 119.96674 * 180.02562 * 18 17 16 20 20 C 1.39151 * 120.21192 * 0.04617 * 19 18 17 21 21 C 1.38369 * 119.69228 * 359.81552 * 20 19 18 22 22 C 1.38106 * 120.00599 * 90.00064 * 17 16 14 23 23 C 1.50770 * 121.41162 * 180.31142 * 21 20 19 24 24 C 1.53075 * 109.68771 * 342.21296 * 23 21 20 25 25 C 1.53407 * 108.29127 * 48.18900 * 24 23 21 26 26 O 1.35844 * 118.50197 * 179.75921 * 20 19 18 27 27 H 0.96995 * 119.99806 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.47066 * 60.00150 * 9 7 2 29 29 H 1.08998 * 109.47132 * 300.00011 * 9 7 2 30 30 H 0.96996 * 119.99950 * 244.99980 * 13 10 9 31 31 H 1.09000 * 109.46891 * 59.99300 * 16 14 13 32 32 H 1.09002 * 109.46783 * 299.99441 * 16 14 13 33 33 H 1.08005 * 120.01819 * 0.06473 * 18 17 16 34 34 H 1.08000 * 119.89633 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.84627 * 0.02562 * 22 17 16 36 36 H 1.08998 * 109.44213 * 102.25510 * 23 21 20 37 37 H 1.09001 * 109.44083 * 222.14299 * 23 21 20 38 38 H 1.08997 * 109.66773 * 288.50700 * 24 23 21 39 39 H 1.08997 * 109.72892 * 167.90601 * 24 23 21 40 40 H 1.09002 * 109.68065 * 175.58527 * 25 24 23 41 41 H 1.08999 * 109.68092 * 55.07058 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0005 11 8 3.1266 -3.9383 1.2364 12 8 3.1266 -3.9383 -1.2375 13 7 1.4795 -5.2341 0.0002 14 6 0.6884 -5.5033 -1.0573 15 8 0.6723 -4.7519 -2.0093 16 6 -0.1768 -6.7371 -1.0565 17 6 -0.9576 -6.8039 -2.3437 18 6 -2.2040 -6.2110 -2.4283 19 6 -2.9182 -6.2733 -3.6070 20 6 -2.3889 -6.9321 -4.7125 21 6 -1.1402 -7.5220 -4.6258 22 6 -0.4283 -7.4571 -3.4394 23 6 -0.5268 -8.2395 -5.8014 24 6 -1.6140 -8.5744 -6.8256 25 6 -2.4518 -7.3125 -7.0685 26 8 -3.1240 -6.9765 -5.8540 27 1 -0.4849 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8897 30 1 1.4922 -5.8348 0.7617 31 1 -0.8678 -6.6957 -0.2145 32 1 0.4528 -7.6223 -0.9667 33 1 -2.6180 -5.6989 -1.5721 34 1 -3.8917 -5.8102 -3.6717 35 1 0.5453 -7.9195 -3.3709 36 1 0.2236 -7.5996 -6.2657 37 1 -0.0554 -9.1605 -5.4585 38 1 -2.2509 -9.3694 -6.4378 39 1 -1.1531 -8.8949 -7.7599 40 1 -3.1843 -7.5036 -7.8527 41 1 -1.8004 -6.4912 -7.3669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842792993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:16 Heat of formation + Delta-G solvation = -166.096729 kcal Electronic energy + Delta-G solvation = -26901.387743 eV Core-core repulsion = 22871.902488 eV Total energy + Delta-G solvation = -4029.485255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73666 -41.01918 -38.58847 -38.05815 -37.03264 -35.55080 -35.39733 -35.23059 -33.31723 -31.38852 -31.09786 -28.86756 -26.45350 -25.62443 -24.45799 -23.60167 -22.55643 -20.84711 -20.39220 -19.28274 -18.72966 -18.63722 -18.31429 -17.72415 -17.46911 -16.73055 -16.56280 -16.32483 -16.03738 -15.81605 -15.43881 -15.30638 -14.91511 -14.77211 -14.51951 -14.24124 -14.12081 -14.01140 -13.70406 -13.49224 -13.25441 -13.19671 -13.08329 -12.98155 -12.76294 -12.57387 -12.54837 -12.26486 -11.99217 -11.87982 -11.83995 -11.66058 -11.37999 -11.26510 -11.03283 -10.80245 -9.70925 -9.02387 -8.43696 -6.62646 -0.71803 0.37559 0.40991 1.16547 1.36009 1.38392 1.49969 1.68491 2.28857 2.36347 2.71975 2.80204 2.90668 3.30902 3.55470 3.63997 3.72243 3.81812 3.84893 3.96886 4.16455 4.23219 4.31806 4.43928 4.47851 4.61037 4.65660 4.66583 4.69530 4.73627 4.76064 4.93037 5.05350 5.09853 5.18089 5.28055 5.28718 5.46490 5.62398 5.67763 5.80153 5.89279 6.46836 6.50687 6.59942 7.08980 8.69193 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.002935 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.396377 B = 9539.351473 C =10458.064069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.569 4.569 8 H 0.067 0.933 9 C -0.422 4.422 10 S 2.600 3.400 11 O -0.981 6.981 12 O -0.988 6.988 13 N -1.041 6.041 14 C 0.526 3.474 15 O -0.531 6.531 16 C -0.087 4.087 17 C -0.116 4.116 18 C -0.082 4.082 19 C -0.166 4.166 20 C 0.113 3.887 21 C -0.172 4.172 22 C -0.079 4.079 23 C -0.081 4.081 24 C -0.151 4.151 25 C 0.048 3.952 26 O -0.335 6.335 27 H 0.274 0.726 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.449 0.551 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 -21.131 -7.379 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.608 4.608 8 H 0.085 0.915 9 C -0.557 4.557 10 S 2.700 3.300 11 O -0.971 6.971 12 O -0.978 6.978 13 N -0.808 5.808 14 C 0.315 3.685 15 O -0.404 6.404 16 C -0.127 4.127 17 C -0.117 4.117 18 C -0.100 4.100 19 C -0.184 4.184 20 C 0.068 3.932 21 C -0.173 4.173 22 C -0.097 4.097 23 C -0.118 4.118 24 C -0.189 4.189 25 C -0.026 4.026 26 O -0.249 6.249 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.289 0.711 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.003 -20.515 -8.111 22.862 hybrid contribution -0.182 1.072 0.277 1.122 sum -6.184 -19.443 -7.834 21.855 Atomic orbital electron populations 1.70036 1.07597 1.28925 1.47801 1.25871 0.96007 1.03253 0.92750 0.85424 0.79065 0.77489 0.79185 1.19313 1.19035 1.18236 1.20733 0.93077 0.90537 1.56404 0.91503 1.27663 1.10786 1.10903 1.06313 1.05362 0.76124 0.75714 0.72823 1.93495 1.71565 1.86435 1.45648 1.93483 1.71790 1.85991 1.46530 1.54905 1.55581 1.42348 1.27950 1.21589 0.78454 0.88619 0.79850 1.90932 1.64576 1.50473 1.34405 1.20888 0.98608 0.95035 0.98210 1.19400 0.95309 1.01149 0.95828 1.21068 0.94217 0.97007 0.97703 1.20764 1.02471 1.02706 0.92475 1.18910 0.91332 0.95908 0.87034 1.20094 0.95323 1.03789 0.98105 1.21055 0.99237 0.98070 0.91363 1.20575 0.97949 1.00548 0.92738 1.22212 0.97884 0.97649 1.01122 1.23275 0.97950 0.97223 0.84136 1.85949 1.37975 1.85823 1.15199 0.91679 0.90533 0.89515 0.71078 0.83263 0.83243 0.84026 0.84824 0.84139 0.90532 0.88330 0.90471 0.87156 0.85160 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.02 13.29 21.45 0.28 -52.73 16 2 C 0.02 1.39 5.46 84.65 0.46 1.86 16 3 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.57 -32.76 9.13 25.60 0.23 -32.52 16 8 H 0.07 3.76 7.71 -2.91 -0.02 3.74 16 9 C -0.42 -21.57 5.64 71.24 0.40 -21.17 16 10 S 2.60 111.38 5.03 -56.49 -0.28 111.10 16 11 O -0.98 -43.60 18.08 -127.65 -2.31 -45.90 16 12 O -0.99 -49.53 17.04 -120.73 -2.06 -51.58 16 13 N -1.04 -30.05 5.60 -173.52 -0.97 -31.02 16 14 C 0.53 15.85 7.56 87.66 0.66 16.51 16 15 O -0.53 -22.22 14.14 13.31 0.19 -22.03 16 16 C -0.09 -1.55 5.83 29.10 0.17 -1.38 16 17 C -0.12 -2.74 4.37 -19.89 -0.09 -2.83 16 18 C -0.08 -2.05 9.70 22.22 0.22 -1.83 16 19 C -0.17 -4.38 9.94 22.42 0.22 -4.16 16 20 C 0.11 2.99 6.47 22.52 0.15 3.13 16 21 C -0.17 -4.08 5.75 -19.75 -0.11 -4.19 16 22 C -0.08 -1.84 9.32 22.30 0.21 -1.63 16 23 C -0.08 -1.36 5.86 29.90 0.18 -1.19 16 24 C -0.15 -1.96 6.20 30.76 0.19 -1.77 16 25 C 0.05 0.79 7.02 72.12 0.51 1.30 16 26 O -0.33 -8.17 10.27 -91.79 -0.94 -9.11 16 27 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.08 4.20 7.19 -2.39 -0.02 4.19 16 29 H 0.09 4.26 8.14 -2.39 -0.02 4.24 16 30 H 0.45 8.04 8.79 -96.75 -0.85 7.19 16 31 H 0.15 1.60 8.09 -2.39 -0.02 1.58 16 32 H 0.15 1.50 8.09 -2.39 -0.02 1.48 16 33 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.14 2.64 8.06 -2.91 -0.02 2.61 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -85.21 361.89 -0.46 -85.67 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.22 Total: 19.83 kcal Atomic # 6 Polarization: -53.28 SS G_CDS: 3.39 Total: -49.89 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -0.69 Total: -83.76 kcal Atomic # 8 Polarization: -123.51 SS G_CDS: -5.12 Total: -128.63 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 111.38 SS G_CDS: -0.28 Total: 111.10 kcal Total: -85.21 -0.46 -85.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842792993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.429 kcal (2) G-P(sol) polarization free energy of solvation -85.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds