Wall clock time and date at job start Tue Mar 31 2020 22:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76205 * 99.99923 * 2 1 4 4 C 1.36407 * 125.10712 * 179.97438 * 3 2 1 5 5 C 1.36720 * 114.85097 * 179.97438 * 4 3 2 6 6 C 1.37181 * 114.61307 * 0.02562 * 5 4 3 7 7 C 1.40840 * 125.20523 * 179.97438 * 6 5 4 8 8 C 1.36198 * 119.99388 * 224.97286 * 7 6 5 9 9 C 1.40940 * 120.00654 * 10.31404 * 8 7 6 10 10 O 1.21861 * 119.99719 * 6.82020 * 9 8 7 11 11 N 1.34778 * 120.00313 * 186.55080 * 9 8 7 12 12 C 1.47419 * 125.64884 * 0.29536 * 11 9 8 13 13 C 1.54912 * 104.83570 * 204.09329 * 12 11 9 14 14 C 1.55158 * 101.57925 * 322.99509 * 13 12 11 15 15 O 1.42903 * 110.71599 * 277.13349 * 14 13 12 16 16 C 1.50695 * 110.72211 * 154.04434 * 14 13 12 17 17 H 1.08005 * 119.99533 * 359.97438 * 16 14 13 18 18 C 1.37874 * 120.00246 * 179.97438 * 16 14 13 19 19 N 1.31516 * 120.00118 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99998 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47399 * 59.99898 * 20 18 16 22 22 H 1.48507 * 109.47080 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47341 * 299.99541 * 20 18 16 24 24 C 1.47021 * 125.64614 * 179.97438 * 11 9 8 25 25 S 1.75822 * 125.10984 * 0.27549 * 3 2 1 26 26 H 1.08994 * 109.47027 * 300.00213 * 1 2 3 27 27 H 1.08998 * 109.46653 * 60.00391 * 1 2 3 28 28 H 1.08998 * 109.46735 * 179.97438 * 1 2 3 29 29 H 1.08005 * 122.57963 * 359.97438 * 4 3 2 30 30 H 1.07998 * 122.69274 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.99946 * 44.97006 * 7 6 5 32 32 H 1.08005 * 119.99842 * 190.31293 * 8 7 6 33 33 H 1.09003 * 110.36815 * 322.93388 * 12 11 9 34 34 H 1.09006 * 110.36288 * 85.14385 * 12 11 9 35 35 H 1.09001 * 111.00332 * 81.06304 * 13 12 11 36 36 H 1.08999 * 111.00355 * 204.91874 * 13 12 11 37 37 H 0.96701 * 113.99825 * 179.97438 * 15 14 13 38 38 H 0.96996 * 119.99786 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.88825 * 298.39112 * 24 11 9 40 40 H 1.09004 * 109.88535 * 59.56230 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.3512 2.3141 0.0005 5 6 3.3450 3.6813 -0.0002 6 6 2.0953 4.2470 -0.0007 7 6 1.8302 5.6302 -0.0009 8 6 0.8822 6.1419 0.8324 9 6 0.3217 5.3345 1.8426 10 8 0.7708 4.2212 2.0519 11 7 -0.7073 5.7958 2.5807 12 6 -1.3454 7.1167 2.4344 13 6 -1.9825 7.4047 3.8168 14 6 -2.4735 5.9931 4.2335 15 8 -3.7413 5.7035 3.6411 16 6 -2.5495 5.8764 5.7341 17 1 -2.2776 6.7170 6.3554 18 6 -2.9659 4.6968 6.3136 19 7 -3.2974 3.6734 5.5570 20 14 -3.0593 4.5520 8.1737 21 1 -4.0073 5.5656 8.7021 22 1 -3.5326 3.1932 8.5413 23 1 -1.7130 4.7821 8.7564 24 6 -1.3838 5.0625 3.6605 25 16 0.8751 2.9809 0.0069 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.2640 1.7368 0.0014 30 1 4.2513 4.2687 -0.0003 31 1 2.3787 6.2851 -0.6617 32 1 0.5599 7.1665 0.7192 33 1 -0.5989 7.8743 2.1955 34 1 -2.1125 7.0838 1.6607 35 1 -1.2390 7.7826 4.5185 36 1 -2.8186 8.0979 3.7248 37 1 -4.0925 4.8321 3.8699 38 1 -3.5907 2.8437 5.9648 39 1 -1.8393 4.1552 3.2638 40 1 -0.6673 4.8089 4.4419 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862099394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:50 Heat of formation + Delta-G solvation = -13.742028 kcal Electronic energy + Delta-G solvation = -24854.883607 eV Core-core repulsion = 21274.757819 eV Total energy + Delta-G solvation = -3580.125788 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.76386 -37.84611 -37.01594 -34.34890 -33.53018 -32.19158 -30.31039 -29.38156 -28.59864 -27.74386 -25.67265 -24.31649 -22.95665 -21.53409 -19.74857 -19.59686 -18.77241 -17.51640 -17.17926 -16.34607 -16.02432 -15.43864 -15.15672 -14.86901 -14.50632 -14.28673 -13.94360 -13.78283 -13.55277 -13.28812 -12.96510 -12.84927 -12.80996 -12.67632 -12.27208 -12.03089 -11.86545 -11.62634 -11.45813 -11.10111 -11.06382 -10.83670 -10.68006 -10.54761 -10.29921 -10.22259 -10.08773 -9.38291 -9.29776 -8.89293 -8.69130 -8.34960 -8.09272 -7.44447 -7.11045 -6.32342 -4.40811 0.34396 1.47262 1.49856 1.79715 2.26934 2.51522 2.89560 3.20441 3.26067 3.28053 3.74219 3.81325 4.24638 4.93283 4.94531 4.99095 5.00681 5.07474 5.35610 5.39336 5.52030 5.57113 5.60775 5.70142 5.79093 5.91824 6.01042 6.02342 6.14328 6.31158 6.46211 6.47645 6.60830 6.74267 6.82662 6.97748 7.24675 7.34910 7.70532 7.96820 8.21975 8.61162 8.73419 9.28058 9.40121 10.75468 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.003609 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.357064 B = 7756.164155 C = 9071.830278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 S -0.055 6.055 3 C -0.231 4.231 4 C -0.128 4.128 5 C -0.102 4.102 6 C -0.183 4.183 7 C 0.000 4.000 8 C -0.208 4.208 9 C 0.532 3.468 10 O -0.537 6.537 11 N -0.602 5.602 12 C 0.100 3.900 13 C -0.118 4.118 14 C 0.249 3.751 15 O -0.587 6.587 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.071 3.929 19 N -0.896 5.896 20 Si 0.904 3.096 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.103 3.897 25 S 0.260 5.740 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.386 0.614 38 H 0.271 0.729 39 H 0.063 0.937 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.415 -0.061 -13.564 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 S 0.182 5.818 3 C -0.462 4.462 4 C -0.165 4.165 5 C -0.134 4.134 6 C -0.304 4.304 7 C -0.021 4.021 8 C -0.232 4.232 9 C 0.323 3.677 10 O -0.420 6.420 11 N -0.333 5.333 12 C -0.023 4.023 13 C -0.156 4.156 14 C 0.208 3.792 15 O -0.397 6.397 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.019 4.019 25 S 0.529 5.471 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.238 0.762 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.767 -1.376 -13.720 15.825 hybrid contribution 0.595 0.571 1.458 1.675 sum 8.362 -0.805 -12.262 14.864 Atomic orbital electron populations 1.23738 0.95208 1.07484 1.06583 1.85130 1.06110 0.98015 1.92500 1.26989 1.01916 1.01436 1.15867 1.19707 0.95860 0.94071 1.06894 1.20313 0.96338 0.93837 1.02936 1.22176 0.97131 0.97541 1.13600 1.20584 0.94014 0.91837 0.95714 1.22359 1.01063 1.01654 0.98137 1.16776 0.80390 0.86873 0.83629 1.90981 1.61630 1.20222 1.69174 1.48813 1.31787 1.17505 1.35224 1.22355 0.96160 0.84380 0.99454 1.22761 0.99699 0.98986 0.94186 1.19478 0.80619 0.88067 0.91021 1.86070 1.36935 1.41817 1.74889 1.21495 1.46145 0.99105 0.90927 0.91576 1.25058 0.93696 0.95202 0.99189 1.69560 1.44570 1.03612 1.35842 0.86456 0.78700 0.77350 0.84395 1.19948 1.21026 1.19999 1.22990 0.95581 0.96172 0.87147 1.83997 1.06206 0.92440 1.64458 0.88922 0.89665 0.87071 0.84748 0.84470 0.84320 0.85046 0.91933 0.91718 0.90559 0.90501 0.76222 0.91862 0.91857 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.47 101.05 0.96 -0.85 16 2 S -0.05 -0.71 22.88 -107.50 -2.46 -3.17 16 3 C -0.23 -3.48 6.70 30.07 0.20 -3.28 16 4 C -0.13 -1.81 10.15 -40.79 -0.41 -2.23 16 5 C -0.10 -1.40 10.12 -40.51 -0.41 -1.81 16 6 C -0.18 -2.72 4.59 -38.98 -0.18 -2.90 16 7 C 0.00 0.01 9.86 -39.33 -0.39 -0.38 16 8 C -0.21 -3.02 9.33 -39.29 -0.37 -3.38 16 9 C 0.53 10.17 7.11 -15.24 -0.11 10.06 16 10 O -0.54 -11.67 11.91 5.04 0.06 -11.61 16 11 N -0.60 -12.07 3.33 -174.13 -0.58 -12.65 16 12 C 0.10 1.70 6.52 -2.53 -0.02 1.68 16 13 C -0.12 -2.30 6.23 -24.58 -0.15 -2.46 16 14 C 0.25 5.92 0.86 -89.93 -0.08 5.85 16 15 O -0.59 -14.61 13.07 -35.23 -0.46 -15.07 16 16 C -0.54 -13.95 8.12 -34.44 -0.28 -14.23 16 17 H 0.07 1.68 7.76 -52.48 -0.41 1.27 16 18 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 19 N -0.90 -23.62 10.97 55.43 0.61 -23.01 16 20 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.10 2.45 5.54 -3.06 -0.02 2.43 16 25 S 0.26 4.13 17.97 -107.50 -1.93 2.20 16 26 H 0.09 1.20 7.99 -51.92 -0.41 0.79 16 27 H 0.08 0.88 8.00 -51.92 -0.42 0.47 16 28 H 0.11 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.13 1.53 6.67 -52.48 -0.35 1.18 16 33 H 0.06 0.85 7.02 -51.93 -0.36 0.49 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.39 9.93 6.98 45.56 0.32 10.25 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.06 1.64 8.07 -51.93 -0.42 1.22 16 40 H 0.07 1.72 7.82 -51.93 -0.41 1.31 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -29.70 356.12 -10.31 -40.00 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -4.55 Total: 12.35 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.34 Total: -9.74 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.03 Total: -35.66 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.40 Total: -26.68 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -4.39 Total: -0.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.70 -10.31 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862099394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.263 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds