Wall clock time and date at job start Tue Mar 31 2020 22:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76205 * 99.99923 * 2 1 4 4 C 1.36407 * 125.10712 * 179.97438 * 3 2 1 5 5 C 1.36720 * 114.85097 * 179.97438 * 4 3 2 6 6 C 1.37181 * 114.61307 * 0.02562 * 5 4 3 7 7 C 1.40840 * 125.20523 * 179.97438 * 6 5 4 8 8 C 1.36198 * 119.99388 * 224.97286 * 7 6 5 9 9 C 1.40940 * 120.00654 * 10.31404 * 8 7 6 10 10 O 1.21861 * 119.99719 * 6.82020 * 9 8 7 11 11 N 1.34778 * 120.00313 * 186.55080 * 9 8 7 12 12 C 1.47419 * 125.64884 * 0.29536 * 11 9 8 13 13 C 1.54912 * 104.83570 * 204.09329 * 12 11 9 14 14 C 1.55158 * 101.57925 * 322.99509 * 13 12 11 15 15 O 1.42903 * 110.71599 * 277.13349 * 14 13 12 16 16 C 1.50695 * 110.72211 * 154.04434 * 14 13 12 17 17 H 1.08005 * 119.99533 * 359.97438 * 16 14 13 18 18 C 1.37874 * 120.00246 * 179.97438 * 16 14 13 19 19 N 1.31516 * 120.00118 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99998 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47399 * 59.99898 * 20 18 16 22 22 H 1.48507 * 109.47080 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47341 * 299.99541 * 20 18 16 24 24 C 1.47021 * 125.64614 * 179.97438 * 11 9 8 25 25 S 1.75822 * 125.10984 * 0.27549 * 3 2 1 26 26 H 1.08994 * 109.47027 * 300.00213 * 1 2 3 27 27 H 1.08998 * 109.46653 * 60.00391 * 1 2 3 28 28 H 1.08998 * 109.46735 * 179.97438 * 1 2 3 29 29 H 1.08005 * 122.57963 * 359.97438 * 4 3 2 30 30 H 1.07998 * 122.69274 * 180.02562 * 5 4 3 31 31 H 1.07995 * 119.99946 * 44.97006 * 7 6 5 32 32 H 1.08005 * 119.99842 * 190.31293 * 8 7 6 33 33 H 1.09003 * 110.36815 * 322.93388 * 12 11 9 34 34 H 1.09006 * 110.36288 * 85.14385 * 12 11 9 35 35 H 1.09001 * 111.00332 * 81.06304 * 13 12 11 36 36 H 1.08999 * 111.00355 * 204.91874 * 13 12 11 37 37 H 0.96701 * 113.99825 * 179.97438 * 15 14 13 38 38 H 0.96996 * 119.99786 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.88825 * 298.39112 * 24 11 9 40 40 H 1.09004 * 109.88535 * 59.56230 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.3512 2.3141 0.0005 5 6 3.3450 3.6813 -0.0002 6 6 2.0953 4.2470 -0.0007 7 6 1.8302 5.6302 -0.0009 8 6 0.8822 6.1419 0.8324 9 6 0.3217 5.3345 1.8426 10 8 0.7708 4.2212 2.0519 11 7 -0.7073 5.7958 2.5807 12 6 -1.3454 7.1167 2.4344 13 6 -1.9825 7.4047 3.8168 14 6 -2.4735 5.9931 4.2335 15 8 -3.7413 5.7035 3.6411 16 6 -2.5495 5.8764 5.7341 17 1 -2.2776 6.7170 6.3554 18 6 -2.9659 4.6968 6.3136 19 7 -3.2974 3.6734 5.5570 20 14 -3.0593 4.5520 8.1737 21 1 -4.0073 5.5656 8.7021 22 1 -3.5326 3.1932 8.5413 23 1 -1.7130 4.7821 8.7564 24 6 -1.3838 5.0625 3.6605 25 16 0.8751 2.9809 0.0069 26 1 -0.3633 0.5138 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.2640 1.7368 0.0014 30 1 4.2513 4.2687 -0.0003 31 1 2.3787 6.2851 -0.6617 32 1 0.5599 7.1665 0.7192 33 1 -0.5989 7.8743 2.1955 34 1 -2.1125 7.0838 1.6607 35 1 -1.2390 7.7826 4.5185 36 1 -2.8186 8.0979 3.7248 37 1 -4.0925 4.8321 3.8699 38 1 -3.5907 2.8437 5.9648 39 1 -1.8393 4.1552 3.2638 40 1 -0.6673 4.8089 4.4419 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862099394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:49 Heat of formation + Delta-G solvation = -32.301197 kcal Electronic energy + Delta-G solvation = -24855.688393 eV Core-core repulsion = 21274.757819 eV Total energy + Delta-G solvation = -3580.930574 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.23222 -39.32728 -38.30837 -36.09686 -34.68369 -34.19028 -31.90425 -30.41468 -29.91032 -29.28195 -27.32527 -25.67241 -24.39237 -22.82262 -21.39647 -20.81177 -20.07288 -19.21572 -18.71949 -17.66716 -17.34315 -17.06809 -16.52853 -16.39175 -16.10438 -15.50048 -15.24400 -14.92822 -14.78167 -14.72158 -14.55146 -14.45471 -13.91321 -13.84849 -13.71711 -13.50283 -13.24812 -13.01575 -12.99586 -12.84956 -12.51851 -12.35399 -12.29091 -12.18887 -12.08743 -11.39197 -11.28687 -11.20439 -10.68932 -10.63290 -10.29528 -10.01219 -9.52879 -8.77152 -8.29568 -8.20239 -6.45402 -0.77219 0.39142 0.44061 0.68570 1.16975 1.39968 1.40616 1.44651 1.48494 1.79582 2.25595 2.37238 2.48093 2.97020 3.80318 3.84108 4.00811 4.02768 4.09266 4.12197 4.27467 4.38270 4.41872 4.50651 4.58343 4.67572 4.68255 4.72592 4.87827 5.01476 5.06118 5.13164 5.16789 5.30335 5.35958 5.40997 5.51578 5.62330 5.74210 6.02653 6.60570 6.76251 7.26630 7.27383 7.36232 8.76312 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.003609 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.357064 B = 7756.164155 C = 9071.830278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 S -0.055 6.055 3 C -0.242 4.242 4 C -0.136 4.136 5 C -0.097 4.097 6 C -0.198 4.198 7 C 0.027 3.973 8 C -0.229 4.229 9 C 0.524 3.476 10 O -0.573 6.573 11 N -0.612 5.612 12 C 0.105 3.895 13 C -0.114 4.114 14 C 0.232 3.768 15 O -0.590 6.590 16 C -0.560 4.560 17 H 0.066 0.934 18 C 0.027 3.973 19 N -0.917 5.917 20 Si 0.962 3.038 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.125 3.875 25 S 0.201 5.799 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.154 0.846 30 H 0.171 0.829 31 H 0.191 0.809 32 H 0.167 0.833 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.377 0.623 38 H 0.271 0.729 39 H 0.025 0.975 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.070 1.795 -14.705 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 S 0.182 5.818 3 C -0.473 4.473 4 C -0.174 4.174 5 C -0.129 4.129 6 C -0.319 4.319 7 C 0.006 3.994 8 C -0.253 4.253 9 C 0.318 3.682 10 O -0.458 6.458 11 N -0.344 5.344 12 C -0.017 4.017 13 C -0.152 4.152 14 C 0.192 3.808 15 O -0.399 6.399 16 C -0.598 4.598 17 H 0.085 0.915 18 C -0.174 4.174 19 N -0.557 5.557 20 Si 0.787 3.213 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.199 1.199 24 C 0.001 3.999 25 S 0.470 5.530 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.155 0.845 29 H 0.171 0.829 30 H 0.189 0.811 31 H 0.208 0.792 32 H 0.185 0.815 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.427 0.509 -14.884 17.625 hybrid contribution 0.169 -0.135 1.764 1.777 sum 9.596 0.374 -13.119 16.258 Atomic orbital electron populations 1.23781 0.93996 1.08954 1.05854 1.85020 1.07489 0.96970 1.92281 1.27237 1.01884 1.02065 1.16132 1.20116 0.96196 0.94842 1.06224 1.20722 0.97104 0.93892 1.01177 1.22539 0.96843 0.98310 1.14257 1.21148 0.92433 0.91197 0.94671 1.22356 1.02304 1.02694 0.97906 1.17642 0.79594 0.86895 0.84027 1.90979 1.62571 1.22013 1.70237 1.48854 1.32443 1.18338 1.34742 1.22485 0.97379 0.83862 0.97926 1.22754 1.00307 0.96277 0.95823 1.19713 0.79981 0.90817 0.90292 1.86058 1.37639 1.41197 1.75011 1.21863 1.46261 0.99280 0.92417 0.91533 1.25796 0.93491 0.94985 1.03102 1.69671 1.45018 1.03842 1.37196 0.85549 0.78634 0.77383 0.79752 1.19103 1.20865 1.19926 1.22383 0.94770 0.95428 0.87290 1.84189 1.08303 0.94596 1.65872 0.91138 0.88881 0.84462 0.82870 0.81141 0.79195 0.81517 0.87225 0.91107 0.89976 0.89283 0.77203 0.91989 0.95609 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.47 113.37 1.07 -2.53 16 2 S -0.05 -1.43 22.88 -56.49 -1.29 -2.73 16 3 C -0.24 -7.27 6.70 67.39 0.45 -6.82 16 4 C -0.14 -3.67 10.15 21.49 0.22 -3.45 16 5 C -0.10 -2.41 10.12 21.67 0.22 -2.19 16 6 C -0.20 -5.51 4.59 22.66 0.10 -5.41 16 7 C 0.03 0.59 9.86 22.43 0.22 0.81 16 8 C -0.23 -5.94 9.33 22.46 0.21 -5.73 16 9 C 0.52 19.80 7.11 84.90 0.60 20.40 16 10 O -0.57 -25.51 11.91 -4.86 -0.06 -25.56 16 11 N -0.61 -24.52 3.33 -822.96 -2.74 -27.25 16 12 C 0.11 3.36 6.52 86.86 0.57 3.92 16 13 C -0.11 -4.30 6.23 31.99 0.20 -4.10 16 14 C 0.23 11.30 0.86 -10.35 -0.01 11.29 16 15 O -0.59 -30.18 13.07 -148.98 -1.95 -32.13 16 16 C -0.56 -29.63 8.12 25.60 0.21 -29.43 16 17 H 0.07 3.42 7.76 -2.91 -0.02 3.39 16 18 C 0.03 1.42 5.28 84.65 0.45 1.87 16 19 N -0.92 -50.28 10.97 21.45 0.24 -50.04 16 20 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 C 0.13 6.24 5.54 86.73 0.48 6.72 16 25 S 0.20 6.51 17.97 -56.49 -1.01 5.49 16 26 H 0.07 1.96 7.99 -2.40 -0.02 1.94 16 27 H 0.09 1.98 8.00 -2.40 -0.02 1.96 16 28 H 0.14 2.35 8.14 -2.40 -0.02 2.33 16 29 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 31 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.17 3.05 6.67 -2.91 -0.02 3.03 16 33 H 0.11 2.50 7.02 -2.39 -0.02 2.48 16 34 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.08 2.97 8.03 -2.39 -0.02 2.95 16 36 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.38 20.36 6.98 -74.06 -0.52 19.85 16 38 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 39 H 0.03 1.43 8.07 -2.39 -0.02 1.41 16 40 H 0.03 1.52 7.82 -2.38 -0.02 1.50 16 Total: -1.00 -68.54 356.12 0.76 -67.79 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.55 Total: 34.71 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 4.99 Total: -14.64 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.50 Total: -77.30 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -2.01 Total: -57.69 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -2.31 Total: 2.77 kcal Total: -68.54 0.76 -67.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862099394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.487 kcal (2) G-P(sol) polarization free energy of solvation -68.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds