Wall clock time and date at job start Tue Mar 31 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76188 * 100.00288 * 2 1 4 4 C 1.36416 * 125.11305 * 180.02562 * 3 2 1 5 5 C 1.36712 * 114.85259 * 179.72443 * 4 3 2 6 6 C 1.37176 * 114.61729 * 0.50891 * 5 4 3 7 7 C 1.40834 * 125.20765 * 179.78633 * 6 5 4 8 8 C 1.36205 * 120.00072 * 179.72005 * 7 6 5 9 9 C 1.40947 * 120.00322 * 179.97438 * 8 7 6 10 10 O 1.21855 * 119.99577 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00011 * 180.02562 * 9 8 7 12 12 C 1.47418 * 125.65056 * 359.96946 * 11 9 8 13 13 C 1.54911 * 104.83336 * 155.92152 * 12 11 9 14 14 C 1.55157 * 101.57885 * 37.01031 * 13 12 11 15 15 O 1.42895 * 110.71700 * 82.86763 * 14 13 12 16 16 C 1.50702 * 110.71876 * 205.95912 * 14 13 12 17 17 H 1.08000 * 120.00221 * 117.74066 * 16 14 13 18 18 C 1.37875 * 119.99852 * 297.74202 * 16 14 13 19 19 N 1.31522 * 120.00246 * 185.34425 * 18 16 14 20 20 Si 1.86803 * 120.00285 * 5.33585 * 18 16 14 21 21 H 1.48497 * 109.47024 * 84.75141 * 20 18 16 22 22 H 1.48503 * 109.47388 * 204.74772 * 20 18 16 23 23 H 1.48502 * 109.47015 * 324.75025 * 20 18 16 24 24 C 1.47025 * 125.64652 * 180.02562 * 11 9 8 25 25 S 1.75825 * 125.11059 * 0.02575 * 3 2 1 26 26 H 1.08999 * 109.47793 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46998 * 299.99916 * 1 2 3 28 28 H 1.09007 * 109.47371 * 59.99900 * 1 2 3 29 29 H 1.08001 * 122.57193 * 0.02562 * 4 3 2 30 30 H 1.08001 * 122.69329 * 180.29069 * 5 4 3 31 31 H 1.07995 * 120.00168 * 359.71413 * 7 6 5 32 32 H 1.08001 * 119.99389 * 359.97438 * 8 7 6 33 33 H 1.09002 * 110.36695 * 37.08456 * 12 11 9 34 34 H 1.08999 * 110.46552 * 274.80744 * 12 11 9 35 35 H 1.09006 * 110.99980 * 278.93912 * 13 12 11 36 36 H 1.08993 * 111.04000 * 155.10216 * 13 12 11 37 37 H 0.96697 * 114.00213 * 179.97438 * 15 14 13 38 38 H 0.96990 * 120.00336 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.87977 * 61.59231 * 24 11 9 40 40 H 1.09000 * 109.87831 * 300.42731 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7351 0.0000 4 6 3.3512 2.3140 -0.0005 5 6 3.3451 3.6811 -0.0064 6 6 2.0955 4.2469 0.0003 7 6 1.8305 5.6301 0.0005 8 6 0.5438 6.0770 0.0018 9 6 0.2785 7.4613 0.0026 10 8 1.2003 8.2582 0.0026 11 7 -0.9946 7.9034 0.0043 12 6 -2.1993 7.0537 0.0048 13 6 -3.3107 7.9418 0.6177 14 6 -2.9549 9.3341 0.0328 15 8 -3.4828 9.4778 -1.2873 16 6 -3.4606 10.4344 0.9298 17 1 -2.7634 11.1173 1.3925 18 6 -4.8133 10.5693 1.1599 19 7 -5.2634 11.5903 1.8561 20 14 -6.0069 9.3020 0.4825 21 1 -6.1002 8.1572 1.4238 22 1 -7.3473 9.9207 0.3214 23 1 -5.5222 8.8205 -0.8360 24 6 -1.4121 9.3132 0.0047 25 16 0.8752 2.9808 0.0006 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.2639 1.7366 -0.0014 30 1 4.2513 4.2685 -0.0120 31 1 2.6474 6.3365 -0.0001 32 1 -0.2731 5.3706 0.0021 33 1 -2.0387 6.1684 0.6201 34 1 -2.4624 6.7650 -1.0127 35 1 -3.2500 7.9481 1.7061 36 1 -4.2973 7.6190 0.2855 37 1 -3.2884 10.3314 -1.6979 38 1 -6.2150 11.6850 2.0182 39 1 -1.0510 9.8070 -0.8974 40 1 -1.0183 9.8160 0.8880 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862099400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:54 Heat of formation + Delta-G solvation = -17.766120 kcal Electronic energy + Delta-G solvation = -23852.888573 eV Core-core repulsion = 20272.588287 eV Total energy + Delta-G solvation = -3580.300286 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.89732 -38.22203 -37.59316 -34.59387 -34.09160 -32.45276 -30.53225 -29.85521 -29.14394 -28.25518 -26.04314 -24.68271 -22.85662 -21.83785 -20.37792 -19.77890 -18.76140 -18.09008 -17.53175 -16.89619 -16.35873 -15.57229 -15.37005 -15.19318 -14.81863 -14.61141 -14.50603 -14.08579 -13.67959 -13.62604 -13.36996 -13.24352 -13.16991 -12.83061 -12.56541 -12.52197 -12.31755 -12.23482 -11.67795 -11.39918 -11.32515 -11.14256 -10.99598 -10.82131 -10.62234 -10.32619 -10.09756 -9.62358 -9.15920 -9.07153 -8.93741 -8.78375 -8.53989 -8.17790 -7.55822 -6.25709 -4.37624 -0.23941 0.84831 0.91771 1.46228 1.50406 1.95081 2.50043 3.24724 3.37405 3.44947 3.54678 3.60681 4.36946 4.51785 4.52260 4.58399 4.87047 4.92555 4.99989 5.03880 5.11664 5.14092 5.19041 5.41300 5.47692 5.57256 5.68462 5.74921 5.83392 5.87144 6.06513 6.13535 6.16966 6.42601 6.55960 6.62726 6.68495 7.10216 7.42211 7.91729 8.15123 8.47112 8.70716 8.86425 9.36833 10.84715 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002481 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.583764 B =11281.532369 C =12420.785352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 S -0.036 6.036 3 C -0.212 4.212 4 C -0.118 4.118 5 C -0.089 4.089 6 C -0.176 4.176 7 C 0.007 3.993 8 C -0.206 4.206 9 C 0.558 3.442 10 O -0.558 6.558 11 N -0.603 5.603 12 C 0.100 3.900 13 C -0.127 4.127 14 C 0.216 3.784 15 O -0.574 6.574 16 C -0.553 4.553 17 H 0.079 0.921 18 C 0.089 3.911 19 N -0.885 5.885 20 Si 0.875 3.125 21 H -0.283 1.283 22 H -0.300 1.300 23 H -0.228 1.228 24 C 0.096 3.904 25 S 0.165 5.835 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.367 0.633 38 H 0.268 0.732 39 H 0.060 0.940 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.293 -23.486 -4.448 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 S 0.203 5.797 3 C -0.443 4.443 4 C -0.154 4.154 5 C -0.121 4.121 6 C -0.297 4.297 7 C -0.015 4.015 8 C -0.229 4.229 9 C 0.350 3.650 10 O -0.440 6.440 11 N -0.335 5.335 12 C -0.023 4.023 13 C -0.165 4.165 14 C 0.176 3.824 15 O -0.381 6.381 16 C -0.590 4.590 17 H 0.097 0.903 18 C -0.117 4.117 19 N -0.521 5.521 20 Si 0.703 3.297 21 H -0.209 1.209 22 H -0.227 1.227 23 H -0.151 1.151 24 C -0.026 4.026 25 S 0.429 5.571 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.215 0.785 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.567 -24.709 -4.261 27.613 hybrid contribution 0.004 1.075 -0.221 1.098 sum 11.571 -23.634 -4.482 26.693 Atomic orbital electron populations 1.23799 0.95097 1.07907 1.06627 1.85438 1.06107 0.96529 1.91669 1.27004 1.00924 1.01714 1.14634 1.19973 0.96321 0.94182 1.04968 1.20700 0.97114 0.94037 1.00277 1.22350 0.96386 0.96977 1.13983 1.20676 0.97790 0.91521 0.91482 1.22109 0.97100 0.96122 1.07613 1.16378 0.81727 0.88802 0.78063 1.90829 1.43243 1.57865 1.52078 1.48499 1.04873 1.09213 1.70947 1.22407 0.85313 0.93871 1.00723 1.23119 0.97102 0.95267 1.01042 1.19960 0.86799 0.93489 0.82176 1.86458 1.79652 1.40486 1.31489 1.21198 0.93519 1.14276 1.30003 0.90277 1.24958 0.98376 0.95039 0.93311 1.69930 1.14892 1.28663 1.38625 0.87080 0.79169 0.81357 0.82136 1.20939 1.22704 1.15118 1.22793 0.97699 0.80520 1.01626 1.84221 1.07608 0.94220 1.71058 0.86712 0.89132 0.89160 0.83613 0.83103 0.83295 0.86197 0.91610 0.91350 0.89298 0.90561 0.78518 0.92283 0.92189 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.47 101.05 0.96 0.08 16 2 S -0.04 -0.27 22.88 -107.50 -2.46 -2.73 16 3 C -0.21 -1.92 6.70 30.08 0.20 -1.72 16 4 C -0.12 -1.02 10.15 -40.79 -0.41 -1.43 16 5 C -0.09 -0.80 10.12 -40.52 -0.41 -1.21 16 6 C -0.18 -1.87 6.18 -38.99 -0.24 -2.11 16 7 C 0.01 0.09 9.34 -39.33 -0.37 -0.28 16 8 C -0.21 -2.90 8.79 -39.29 -0.35 -3.24 16 9 C 0.56 10.10 7.59 -15.24 -0.12 9.98 16 10 O -0.56 -11.72 16.43 5.05 0.08 -11.64 16 11 N -0.60 -11.25 3.33 -174.14 -0.58 -11.83 16 12 C 0.10 1.65 6.47 -2.53 -0.02 1.64 16 13 C -0.13 -2.53 4.81 -24.58 -0.12 -2.65 16 14 C 0.22 4.76 0.69 -89.94 -0.06 4.70 16 15 O -0.57 -12.27 10.48 -35.23 -0.37 -12.64 16 16 C -0.55 -14.55 8.79 -34.44 -0.30 -14.85 16 17 H 0.08 2.28 7.82 -52.49 -0.41 1.87 16 18 C 0.09 2.42 5.47 -17.82 -0.10 2.32 16 19 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 20 Si 0.87 20.65 23.91 -169.99 -4.06 16.58 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.23 -5.22 5.45 56.52 0.31 -4.92 16 24 C 0.10 1.99 6.22 -3.07 -0.02 1.97 16 25 S 0.17 1.56 20.38 -107.50 -2.19 -0.63 16 26 H 0.11 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.09 0.48 8.00 -51.92 -0.42 0.06 16 28 H 0.09 0.47 8.00 -51.91 -0.42 0.05 16 29 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 31 H 0.15 1.83 7.46 -52.49 -0.39 1.44 16 32 H 0.12 1.48 5.67 -52.49 -0.30 1.18 16 33 H 0.07 0.90 7.11 -51.93 -0.37 0.53 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.79 8.04 -51.93 -0.42 1.37 16 36 H 0.08 1.53 4.94 -51.93 -0.26 1.27 16 37 H 0.37 6.93 9.07 45.56 0.41 7.34 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 40 H 0.08 1.67 7.67 -51.93 -0.40 1.27 16 LS Contribution 354.35 15.07 5.34 5.34 Total: -1.00 -32.14 354.35 -9.11 -41.26 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.30 Total: 8.22 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.35 Total: -6.80 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.19 Total: -36.96 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.29 Total: -24.28 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.06 Total: 16.58 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -4.65 Total: -3.36 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.14 -9.11 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862099400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.489 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds