Wall clock time and date at job start Tue Mar 31 2020 22:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76188 * 100.00288 * 2 1 4 4 C 1.36416 * 125.11305 * 180.02562 * 3 2 1 5 5 C 1.36712 * 114.85259 * 179.72443 * 4 3 2 6 6 C 1.37176 * 114.61729 * 0.50891 * 5 4 3 7 7 C 1.40834 * 125.20765 * 179.78633 * 6 5 4 8 8 C 1.36205 * 120.00072 * 179.72005 * 7 6 5 9 9 C 1.40947 * 120.00322 * 179.97438 * 8 7 6 10 10 O 1.21855 * 119.99577 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00011 * 180.02562 * 9 8 7 12 12 C 1.47418 * 125.65056 * 359.96946 * 11 9 8 13 13 C 1.54911 * 104.83336 * 155.92152 * 12 11 9 14 14 C 1.55157 * 101.57885 * 37.01031 * 13 12 11 15 15 O 1.42895 * 110.71700 * 82.86763 * 14 13 12 16 16 C 1.50702 * 110.71876 * 205.95912 * 14 13 12 17 17 H 1.08000 * 120.00221 * 117.74066 * 16 14 13 18 18 C 1.37875 * 119.99852 * 297.74202 * 16 14 13 19 19 N 1.31522 * 120.00246 * 185.34425 * 18 16 14 20 20 Si 1.86803 * 120.00285 * 5.33585 * 18 16 14 21 21 H 1.48497 * 109.47024 * 84.75141 * 20 18 16 22 22 H 1.48503 * 109.47388 * 204.74772 * 20 18 16 23 23 H 1.48502 * 109.47015 * 324.75025 * 20 18 16 24 24 C 1.47025 * 125.64652 * 180.02562 * 11 9 8 25 25 S 1.75825 * 125.11059 * 0.02575 * 3 2 1 26 26 H 1.08999 * 109.47793 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46998 * 299.99916 * 1 2 3 28 28 H 1.09007 * 109.47371 * 59.99900 * 1 2 3 29 29 H 1.08001 * 122.57193 * 0.02562 * 4 3 2 30 30 H 1.08001 * 122.69329 * 180.29069 * 5 4 3 31 31 H 1.07995 * 120.00168 * 359.71413 * 7 6 5 32 32 H 1.08001 * 119.99389 * 359.97438 * 8 7 6 33 33 H 1.09002 * 110.36695 * 37.08456 * 12 11 9 34 34 H 1.08999 * 110.46552 * 274.80744 * 12 11 9 35 35 H 1.09006 * 110.99980 * 278.93912 * 13 12 11 36 36 H 1.08993 * 111.04000 * 155.10216 * 13 12 11 37 37 H 0.96697 * 114.00213 * 179.97438 * 15 14 13 38 38 H 0.96990 * 120.00336 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.87977 * 61.59231 * 24 11 9 40 40 H 1.09000 * 109.87831 * 300.42731 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7351 0.0000 4 6 3.3512 2.3140 -0.0005 5 6 3.3451 3.6811 -0.0064 6 6 2.0955 4.2469 0.0003 7 6 1.8305 5.6301 0.0005 8 6 0.5438 6.0770 0.0018 9 6 0.2785 7.4613 0.0026 10 8 1.2003 8.2582 0.0026 11 7 -0.9946 7.9034 0.0043 12 6 -2.1993 7.0537 0.0048 13 6 -3.3107 7.9418 0.6177 14 6 -2.9549 9.3341 0.0328 15 8 -3.4828 9.4778 -1.2873 16 6 -3.4606 10.4344 0.9298 17 1 -2.7634 11.1173 1.3925 18 6 -4.8133 10.5693 1.1599 19 7 -5.2634 11.5903 1.8561 20 14 -6.0069 9.3020 0.4825 21 1 -6.1002 8.1572 1.4238 22 1 -7.3473 9.9207 0.3214 23 1 -5.5222 8.8205 -0.8360 24 6 -1.4121 9.3132 0.0047 25 16 0.8752 2.9808 0.0006 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 4.2639 1.7366 -0.0014 30 1 4.2513 4.2685 -0.0120 31 1 2.6474 6.3365 -0.0001 32 1 -0.2731 5.3706 0.0021 33 1 -2.0387 6.1684 0.6201 34 1 -2.4624 6.7650 -1.0127 35 1 -3.2500 7.9481 1.7061 36 1 -4.2973 7.6190 0.2855 37 1 -3.2884 10.3314 -1.6979 38 1 -6.2150 11.6850 2.0182 39 1 -1.0510 9.8070 -0.8974 40 1 -1.0183 9.8160 0.8880 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862099400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:54 Heat of formation + Delta-G solvation = -39.906161 kcal Electronic energy + Delta-G solvation = -23853.848637 eV Core-core repulsion = 20272.588287 eV Total energy + Delta-G solvation = -3581.260350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32055 -39.39817 -38.72663 -36.20624 -35.06281 -34.51540 -32.07512 -30.57568 -30.11501 -29.55873 -27.50523 -25.86133 -24.25662 -22.95596 -21.50060 -21.11122 -20.09007 -19.36225 -18.93705 -18.02740 -17.32978 -16.96064 -16.72459 -16.53276 -16.20192 -16.03955 -15.10192 -15.05185 -14.90850 -14.80355 -14.60819 -14.37024 -14.18319 -14.13171 -14.03808 -13.63849 -13.28585 -13.18435 -13.11878 -13.07219 -12.83274 -12.40311 -12.17511 -12.06203 -11.83686 -11.79712 -11.41333 -11.08393 -10.98759 -10.79102 -10.36916 -9.99592 -9.68106 -9.56135 -8.37536 -8.24605 -6.53713 -1.08081 0.16101 0.33144 0.57600 0.81578 1.37982 1.39238 1.46727 1.67592 1.69603 2.06386 2.38437 2.39552 2.97845 3.45614 3.60415 3.84252 3.97624 4.00337 4.14288 4.15694 4.19389 4.22286 4.32129 4.35879 4.40948 4.56110 4.76082 4.77198 4.79179 4.88993 4.94982 5.04565 5.04992 5.12282 5.28832 5.37667 5.47328 5.49382 6.04740 6.54293 6.57192 7.08894 7.10676 7.27189 8.76791 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.019023 B = 0.002481 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.583764 B =11281.532369 C =12420.785352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 S -0.038 6.038 3 C -0.207 4.207 4 C -0.134 4.134 5 C -0.065 4.065 6 C -0.219 4.219 7 C 0.046 3.954 8 C -0.242 4.242 9 C 0.558 3.442 10 O -0.602 6.602 11 N -0.611 5.611 12 C 0.108 3.892 13 C -0.130 4.130 14 C 0.218 3.782 15 O -0.572 6.572 16 C -0.555 4.555 17 H 0.034 0.966 18 C 0.036 3.964 19 N -0.936 5.936 20 Si 0.940 3.060 21 H -0.265 1.265 22 H -0.308 1.308 23 H -0.212 1.212 24 C 0.103 3.897 25 S 0.177 5.823 26 H 0.135 0.865 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.165 0.835 30 H 0.171 0.829 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.377 0.623 38 H 0.269 0.731 39 H 0.058 0.942 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.599 -27.920 -5.552 31.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 S 0.202 5.798 3 C -0.438 4.438 4 C -0.170 4.170 5 C -0.098 4.098 6 C -0.340 4.340 7 C 0.024 3.976 8 C -0.265 4.265 9 C 0.354 3.646 10 O -0.487 6.487 11 N -0.342 5.342 12 C -0.014 4.014 13 C -0.168 4.168 14 C 0.177 3.823 15 O -0.379 6.379 16 C -0.592 4.592 17 H 0.052 0.948 18 C -0.165 4.165 19 N -0.574 5.574 20 Si 0.764 3.236 21 H -0.191 1.191 22 H -0.236 1.236 23 H -0.134 1.134 24 C -0.020 4.020 25 S 0.441 5.559 26 H 0.154 0.846 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.183 0.817 30 H 0.189 0.811 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.226 0.774 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.874 -29.177 -5.372 31.955 hybrid contribution 0.125 2.297 0.142 2.304 sum 11.999 -26.880 -5.230 29.898 Atomic orbital electron populations 1.23934 0.93119 1.09441 1.06934 1.85530 1.08338 0.95139 1.90816 1.27414 1.01190 1.02707 1.12497 1.20247 0.97052 0.94203 1.05496 1.21039 0.97344 0.94483 0.96917 1.22293 0.97598 0.96437 1.17653 1.20719 0.97036 0.92441 0.87425 1.21815 0.98381 0.93786 1.12563 1.16965 0.80805 0.90172 0.76684 1.90796 1.44278 1.59273 1.54368 1.48525 1.05943 1.08163 1.71560 1.22490 0.82937 0.93839 1.02148 1.23071 0.98795 0.94232 1.00724 1.19788 0.87393 0.93507 0.81611 1.86405 1.79621 1.41267 1.30649 1.21411 0.92946 1.14741 1.30145 0.94777 1.25820 1.00244 0.96851 0.93560 1.70070 1.15348 1.31049 1.40950 0.86079 0.76013 0.79070 0.82408 1.19068 1.23620 1.13391 1.22454 0.96931 0.82397 1.00258 1.84122 1.07292 0.93761 1.70769 0.84630 0.88846 0.88786 0.81739 0.81144 0.83889 0.84302 0.87941 0.89675 0.90104 0.89879 0.77426 0.92218 0.92392 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.47 113.37 1.07 -0.13 16 2 S -0.04 -0.45 22.88 -56.49 -1.29 -1.74 16 3 C -0.21 -3.12 6.70 67.39 0.45 -2.67 16 4 C -0.13 -1.89 10.15 21.49 0.22 -1.67 16 5 C -0.07 -0.98 10.12 21.66 0.22 -0.76 16 6 C -0.22 -4.15 6.18 22.66 0.14 -4.01 16 7 C 0.05 1.06 9.34 22.43 0.21 1.27 16 8 C -0.24 -6.49 8.79 22.46 0.20 -6.30 16 9 C 0.56 20.14 7.59 84.91 0.64 20.78 16 10 O -0.60 -25.95 16.43 -4.84 -0.08 -26.03 16 11 N -0.61 -22.46 3.33 -823.01 -2.74 -25.20 16 12 C 0.11 3.29 6.47 86.86 0.56 3.85 16 13 C -0.13 -4.96 4.81 31.99 0.15 -4.81 16 14 C 0.22 9.60 0.69 -10.35 -0.01 9.59 16 15 O -0.57 -23.71 10.48 -148.98 -1.56 -25.27 16 16 C -0.55 -30.32 8.79 25.60 0.22 -30.09 16 17 H 0.03 2.11 7.82 -2.91 -0.02 2.09 16 18 C 0.04 1.99 5.47 84.65 0.46 2.45 16 19 N -0.94 -56.72 13.96 21.45 0.30 -56.42 16 20 Si 0.94 42.34 23.91 68.60 1.64 43.98 16 21 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 22 H -0.31 -14.25 7.11 99.48 0.71 -13.54 16 23 H -0.21 -8.92 5.45 99.48 0.54 -8.37 16 24 C 0.10 4.41 6.22 86.73 0.54 4.95 16 25 S 0.18 2.84 20.38 -56.49 -1.15 1.69 16 26 H 0.14 0.44 8.14 -2.40 -0.02 0.42 16 27 H 0.09 0.68 8.00 -2.39 -0.02 0.66 16 28 H 0.09 0.66 8.00 -2.39 -0.02 0.64 16 29 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.14 3.43 7.46 -2.91 -0.02 3.41 16 32 H 0.14 3.07 5.67 -2.91 -0.02 3.05 16 33 H 0.10 2.41 7.11 -2.39 -0.02 2.40 16 34 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 3.18 8.04 -2.38 -0.02 3.16 16 36 H 0.08 3.05 4.94 -2.39 -0.01 3.04 16 37 H 0.38 14.03 9.07 -74.06 -0.67 13.36 16 38 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 39 H 0.06 2.44 8.07 -2.39 -0.02 2.42 16 40 H 0.05 2.23 7.67 -2.39 -0.02 2.21 16 Total: -1.00 -72.18 354.35 0.45 -71.73 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.24 Total: 24.80 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 5.09 Total: -7.53 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -2.44 Total: -81.62 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -1.64 Total: -51.30 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.64 Total: 43.98 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.44 Total: -0.05 kcal Total: -72.18 0.45 -71.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862099400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.825 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds