Wall clock time and date at job start Tue Mar 31 2020 22:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86795 * 119.99875 * 2 1 4 4 H 1.48501 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47298 * 300.00343 * 3 2 1 6 6 H 1.48497 * 109.46937 * 60.00307 * 3 2 1 7 7 C 1.40305 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00301 * 174.38133 * 7 2 1 9 9 C 1.40536 * 120.00111 * 354.37853 * 7 2 1 10 10 C 1.44183 * 123.71764 * 334.96577 * 9 7 2 11 11 C 1.32766 * 114.43501 * 180.02562 * 10 9 7 12 12 S 1.75466 * 111.36104 * 359.72480 * 11 10 9 13 13 C 1.39550 * 123.71729 * 155.00184 * 9 7 2 14 14 C 1.46238 * 125.22730 * 359.96385 * 13 9 7 15 15 O 1.21759 * 119.99734 * 8.95015 * 14 13 9 16 16 N 1.34981 * 120.00314 * 188.95358 * 14 13 9 17 17 C 1.45581 * 120.34756 * 358.43006 * 16 14 13 18 18 C 1.50530 * 114.99368 * 274.96150 * 17 16 14 19 19 C 1.51375 * 116.16098 * 292.52825 * 18 17 16 20 20 H 1.09704 * 112.05084 * 185.34614 * 19 18 17 21 21 C 1.54417 * 107.06662 * 310.18159 * 19 18 17 22 22 C 1.51969 * 111.94695 * 85.62483 * 21 19 18 23 23 C 1.52575 * 113.55463 * 13.14091 * 22 21 19 24 24 H 1.09082 * 110.73956 * 128.18693 * 23 22 21 25 25 C 1.48671 * 120.23505 * 177.96767 * 16 14 13 26 26 S 1.83505 * 105.59681 * 8.55513 * 23 22 21 27 27 O 1.42120 * 109.41167 * 90.81181 * 26 23 22 28 28 H 0.96994 * 120.00199 * 359.97438 * 1 2 3 29 29 H 1.08000 * 122.78415 * 0.02788 * 10 9 7 30 30 H 1.07998 * 124.31699 * 180.02562 * 11 10 9 31 31 H 1.08778 * 109.14045 * 151.76269 * 17 16 14 32 32 H 1.09583 * 107.78897 * 35.43596 * 17 16 14 33 33 H 1.09270 * 108.26174 * 171.06132 * 18 17 16 34 34 H 1.09135 * 108.58983 * 54.44914 * 18 17 16 35 35 H 1.09578 * 109.56378 * 324.32041 * 21 19 18 36 36 H 1.09704 * 109.37576 * 206.50748 * 21 19 18 37 37 H 1.09128 * 109.19898 * 251.18121 * 22 21 19 38 38 H 1.09466 * 108.61656 * 133.99670 * 22 21 19 39 39 H 1.09194 * 108.85443 * 9.52756 * 25 16 14 40 40 H 1.09079 * 109.05679 * 251.15543 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8817 2.3963 1.2125 7 6 2.0080 -1.2151 -0.0005 8 1 3.0841 -1.2173 -0.0921 9 6 1.3104 -2.4293 0.1181 10 6 0.0174 -2.5516 0.7442 11 6 -0.4728 -3.7854 0.7556 12 16 0.6232 -4.9157 -0.0189 13 6 1.7932 -3.6496 -0.3564 14 6 3.0733 -3.8434 -1.0362 15 8 3.8815 -2.9340 -1.0831 16 7 3.3589 -5.0305 -1.6119 17 6 2.4125 -6.1337 -1.5312 18 6 2.5111 -6.9660 -0.2808 19 6 3.7732 -7.7867 -0.1231 20 1 3.7344 -8.4364 0.7600 21 6 3.9783 -8.5610 -1.4433 22 6 4.7225 -7.7330 -2.4777 23 6 5.3716 -6.4781 -1.9018 24 1 6.4255 -6.4266 -2.1785 25 6 4.6395 -5.2190 -2.3432 26 16 5.1915 -6.6204 -0.0812 27 8 6.3303 -7.2793 0.4560 28 1 -0.4850 0.8400 0.0004 29 1 -0.5088 -1.7094 1.1688 30 1 -1.4268 -4.0576 1.1825 31 1 2.5377 -6.7753 -2.4007 32 1 1.4021 -5.7122 -1.5781 33 1 1.6604 -7.6515 -0.2579 34 1 2.4275 -6.3058 0.5841 35 1 3.0047 -8.8563 -1.8505 36 1 4.5474 -9.4773 -1.2432 37 1 4.0314 -7.4449 -3.2715 38 1 5.5040 -8.3546 -2.9263 39 1 5.2805 -4.3539 -2.1612 40 1 4.4332 -5.2811 -3.4125 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869452127.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:35 Heat of formation + Delta-G solvation = -38.091586 kcal Electronic energy + Delta-G solvation = -26063.639333 eV Core-core repulsion = 22482.457668 eV Total energy + Delta-G solvation = -3581.181664 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.075 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.49807 -37.35799 -35.90232 -35.50043 -33.78587 -33.45195 -33.06024 -29.05351 -28.18484 -27.00552 -26.04268 -23.37991 -21.85864 -21.77097 -20.64097 -19.17101 -18.59204 -17.24526 -17.03654 -16.68599 -15.86767 -15.54305 -15.34324 -15.06308 -14.49478 -14.26946 -13.96463 -13.79292 -13.48703 -13.22279 -13.06597 -12.54187 -12.39399 -12.33068 -12.16090 -11.93218 -11.75499 -11.52652 -11.42812 -11.23946 -11.09199 -11.05147 -10.86547 -10.77916 -10.25980 -10.21550 -9.94293 -9.57562 -9.56806 -9.07564 -8.49313 -8.23422 -7.89337 -7.49136 -7.07256 -7.01555 -4.56730 1.81446 2.13765 2.46886 2.94589 2.99404 3.09192 3.18371 3.57539 3.65414 3.80561 3.83052 3.95401 4.30968 4.45430 4.70194 4.86757 4.89768 5.06985 5.18968 5.22129 5.36835 5.48036 5.65744 5.73066 5.78787 5.88145 5.93618 5.97383 6.03165 6.06703 6.11803 6.26611 6.48095 6.53965 6.81023 7.12100 7.20539 7.25846 7.50808 7.69236 8.24562 8.37288 8.57790 8.71428 9.44875 9.84094 Molecular weight = 339.07amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.004433 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.991766 B = 6315.278406 C = 7205.296781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.067 3.933 3 Si 0.923 3.077 4 H -0.252 1.252 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.377 4.377 8 H 0.114 0.886 9 C 0.145 3.855 10 C -0.099 4.099 11 C -0.239 4.239 12 S -0.013 6.013 13 C -0.435 4.435 14 C 0.605 3.395 15 O -0.557 6.557 16 N -0.632 5.632 17 C 0.094 3.906 18 C -0.117 4.117 19 C -0.374 4.374 20 H 0.118 0.882 21 C -0.117 4.117 22 C -0.111 4.111 23 C -0.397 4.397 24 H 0.116 0.884 25 C 0.146 3.854 26 S 1.228 4.772 27 O -0.867 6.867 28 H 0.287 0.713 29 H 0.142 0.858 30 H 0.130 0.870 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 -8.638 -2.633 9.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.155 4.155 3 Si 0.747 3.253 4 H -0.175 1.175 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.408 4.408 8 H 0.132 0.868 9 C 0.134 3.866 10 C -0.131 4.131 11 C -0.372 4.372 12 S 0.244 5.756 13 C -0.554 4.554 14 C 0.404 3.596 15 O -0.439 6.439 16 N -0.369 5.369 17 C -0.032 4.032 18 C -0.158 4.158 19 C -0.492 4.492 20 H 0.136 0.864 21 C -0.155 4.155 22 C -0.149 4.149 23 C -0.516 4.516 24 H 0.134 0.866 25 C 0.022 3.978 26 S 1.428 4.572 27 O -0.862 6.862 28 H 0.098 0.902 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.173 -9.030 -2.079 9.340 hybrid contribution 0.363 -0.023 -0.880 0.952 sum 1.536 -9.053 -2.960 9.647 Atomic orbital electron populations 1.69666 1.08089 1.30247 1.32234 1.26397 0.94939 1.02652 0.91522 0.85971 0.81492 0.79193 0.78659 1.17458 1.19598 1.19540 1.20150 0.97391 0.88605 1.34638 0.86773 1.17929 0.89728 0.91807 0.87119 1.21737 0.96162 0.95863 0.99308 1.25590 1.03922 0.99173 1.08499 1.83235 1.14226 1.13545 1.64627 1.22511 1.03258 0.96679 1.32933 1.16973 0.85709 0.80126 0.76784 1.90659 1.49578 1.41010 1.62647 1.48139 1.18428 1.12477 1.57822 1.21124 0.95271 0.89419 0.97382 1.21164 0.95015 0.98729 1.00851 1.27639 1.11684 1.08511 1.01414 0.86361 1.22063 1.01639 0.98537 0.93270 1.21548 0.99644 0.94441 0.99243 1.27564 1.04641 0.99804 1.19556 0.86585 1.21023 0.85980 0.95269 0.95493 1.72374 0.87735 1.09442 0.87668 1.92978 1.46113 1.77404 1.69752 0.90174 0.84108 0.85194 0.90851 0.87849 0.90036 0.89019 0.90370 0.92310 0.90450 0.91915 0.88321 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.90 10.73 55.57 0.60 -17.30 16 2 C 0.07 1.53 5.43 -17.28 -0.09 1.44 16 3 Si 0.92 17.64 29.57 -169.99 -5.03 12.62 16 4 H -0.25 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.38 -9.46 8.57 -37.94 -0.32 -9.78 16 8 H 0.11 2.98 5.99 -52.48 -0.31 2.67 16 9 C 0.15 3.56 5.68 -106.21 -0.60 2.96 16 10 C -0.10 -2.26 9.05 -39.12 -0.35 -2.62 16 11 C -0.24 -4.78 11.07 28.86 0.32 -4.47 16 12 S -0.01 -0.23 15.63 -107.50 -1.68 -1.91 16 13 C -0.44 -9.73 6.29 -35.88 -0.23 -9.95 16 14 C 0.60 12.84 7.63 -12.96 -0.10 12.74 16 15 O -0.56 -13.36 13.88 5.14 0.07 -13.29 16 16 N -0.63 -10.40 2.20 -175.96 -0.39 -10.79 16 17 C 0.09 1.32 4.28 -5.77 -0.02 1.30 16 18 C -0.12 -1.49 3.42 -28.79 -0.10 -1.58 16 19 C -0.37 -4.70 4.27 -26.81 -0.11 -4.81 16 20 H 0.12 1.41 8.20 -51.53 -0.42 0.99 16 21 C -0.12 -1.32 5.16 -26.51 -0.14 -1.45 16 22 C -0.11 -1.25 5.07 -27.47 -0.14 -1.39 16 23 C -0.40 -5.13 3.72 -27.36 -0.10 -5.24 16 24 H 0.12 1.44 8.15 -51.88 -0.42 1.02 16 25 C 0.15 2.06 5.58 -3.26 -0.02 2.04 16 26 S 1.23 18.48 12.63 -107.50 -1.36 17.12 16 27 O -0.87 -17.23 18.15 -35.23 -0.64 -17.87 16 28 H 0.29 5.93 8.29 -40.82 -0.34 5.59 16 29 H 0.14 3.26 6.34 -52.49 -0.33 2.93 16 30 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 31 H 0.07 0.87 5.08 -52.05 -0.26 0.60 16 32 H 0.10 1.62 4.33 -21.13 -0.09 1.53 16 33 H 0.08 0.90 8.16 -51.78 -0.42 0.47 16 34 H 0.09 1.31 6.41 -50.34 -0.32 0.98 16 35 H 0.08 0.76 7.60 -51.60 -0.39 0.37 16 36 H 0.06 0.67 8.20 -51.53 -0.42 0.25 16 37 H 0.08 0.79 6.24 -51.86 -0.32 0.47 16 38 H 0.06 0.67 8.18 -51.67 -0.42 0.25 16 39 H 0.10 1.50 6.99 -51.82 -0.36 1.14 16 40 H 0.07 0.83 7.86 -51.88 -0.41 0.42 16 LS Contribution 323.38 15.07 4.87 4.87 Total: -1.00 -29.62 323.38 -10.05 -39.67 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.48 Total: 7.69 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -2.01 Total: -20.80 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.21 Total: -28.09 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.57 Total: -31.16 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 18.24 SS G_CDS: -3.04 Total: 15.21 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.62 -10.05 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869452127.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.574 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds