Wall clock time and date at job start Tue Mar 31 2020 23:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86790 * 120.00236 * 2 1 4 4 H 1.48506 * 109.47282 * 269.99732 * 3 2 1 5 5 H 1.48498 * 109.47612 * 29.99737 * 3 2 1 6 6 H 1.48503 * 109.47220 * 149.99993 * 3 2 1 7 7 C 1.37883 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99636 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00143 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47202 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47054 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.53957 * 68.37855 * 11 10 9 13 13 O 1.42103 * 110.54238 * 291.62244 * 11 10 9 14 14 N 1.65606 * 104.44395 * 180.02562 * 11 10 9 15 15 C 1.34772 * 120.00140 * 65.00304 * 14 11 10 16 16 O 1.21279 * 119.99974 * 359.97438 * 15 14 11 17 17 C 1.50703 * 119.99994 * 179.97438 * 15 14 11 18 18 C 1.53000 * 109.47226 * 180.02562 * 17 15 14 19 19 H 1.08995 * 110.66533 * 308.22217 * 18 17 15 20 20 C 1.54698 * 110.74949 * 184.99746 * 18 17 15 21 21 C 1.51652 * 101.94353 * 216.45134 * 20 18 17 22 22 C 1.37741 * 132.16565 * 195.61429 * 21 20 18 23 23 C 1.38348 * 119.97626 * 179.10606 * 22 21 20 24 24 C 1.38289 * 119.76321 * 359.72091 * 23 22 21 25 25 C 1.37930 * 120.35471 * 0.74366 * 24 23 22 26 26 C 1.38877 * 107.04471 * 15.14109 * 21 20 18 27 27 O 1.36141 * 111.22231 * 1.43462 * 26 21 20 28 28 H 0.97002 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.46837 * 59.99509 * 9 7 2 30 30 H 1.09003 * 109.47011 * 300.00333 * 9 7 2 31 31 H 1.09001 * 109.46987 * 59.99955 * 10 9 7 32 32 H 1.08995 * 109.47069 * 299.99928 * 10 9 7 33 33 H 0.97004 * 119.99481 * 244.99733 * 14 11 10 34 34 H 1.08996 * 109.46923 * 59.99615 * 17 15 14 35 35 H 1.09005 * 109.46849 * 299.99631 * 17 15 14 36 36 H 1.09010 * 110.93580 * 98.29149 * 20 18 17 37 37 H 1.09001 * 110.97052 * 334.62664 * 20 18 17 38 38 H 1.07998 * 120.01292 * 359.08264 * 22 21 20 39 39 H 1.07997 * 120.11986 * 179.97438 * 23 22 21 40 40 H 1.08010 * 119.82506 * 180.45751 * 24 23 22 41 41 H 1.08002 * 119.88654 * 179.72315 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 16 1.3379 -5.2331 0.0026 12 8 0.6646 -5.4206 -1.2346 13 8 0.6634 -5.4188 1.2395 14 7 2.5202 -6.3928 0.0047 15 6 3.3458 -6.5116 1.0633 16 8 3.2232 -5.7689 2.0142 17 6 4.4212 -7.5673 1.0654 18 6 5.2108 -7.4884 2.3735 19 1 5.5559 -6.4703 2.5538 20 6 6.4016 -8.4757 2.3554 21 6 6.4399 -8.9478 3.7961 22 6 7.4029 -9.6068 4.5278 23 6 7.1756 -9.9051 5.8595 24 6 5.9824 -9.5342 6.4521 25 6 5.0128 -8.8827 5.7187 26 6 5.2324 -8.5821 4.3765 27 8 4.4196 -7.9646 3.4756 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6238 -2.5567 0.8903 31 1 2.8710 -3.6041 0.8923 32 1 2.8724 -3.6049 -0.8877 33 1 2.6184 -6.9866 -0.7561 34 1 5.0940 -7.4022 0.2239 35 1 3.9634 -8.5525 0.9767 36 1 7.3269 -7.9651 2.0881 37 1 6.2083 -9.3076 1.6780 38 1 8.3350 -9.8909 4.0621 39 1 7.9289 -10.4221 6.4353 40 1 5.8069 -9.7600 7.4936 41 1 4.0820 -8.6004 6.1880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870269793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:38 Heat of formation + Delta-G solvation = -151.833135 kcal Electronic energy + Delta-G solvation = -26480.113167 eV Core-core repulsion = 22451.246428 eV Total energy + Delta-G solvation = -4028.866739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.23573 -41.02876 -38.39489 -38.25032 -37.23300 -35.97496 -35.61484 -34.18022 -33.19554 -32.30700 -30.92123 -28.31020 -27.64958 -24.24775 -23.60994 -23.22772 -22.56521 -22.03430 -20.72498 -19.38689 -18.94008 -18.53192 -18.32284 -17.68897 -17.31483 -16.92729 -16.60723 -16.55755 -16.32275 -16.19232 -15.29278 -15.20552 -15.05285 -14.52169 -14.44326 -14.04311 -13.95327 -13.82165 -13.79545 -13.38908 -13.32926 -13.25967 -13.07547 -12.95316 -12.85387 -12.64716 -12.51257 -12.31704 -12.25803 -12.02793 -11.81413 -11.76264 -11.65540 -11.36135 -11.06672 -10.67087 -9.81544 -9.07679 -8.28919 -6.43176 -1.00169 0.36644 0.43669 1.03104 1.38770 1.41518 1.44393 1.52684 2.29454 2.35619 2.56948 2.79490 2.98947 3.04523 3.21823 3.36198 3.63720 3.79312 3.90366 4.02694 4.04122 4.06394 4.20348 4.22485 4.38799 4.50810 4.58162 4.62453 4.67718 4.70335 4.92467 4.97409 5.15823 5.20510 5.21918 5.41657 5.48875 5.57710 5.64547 5.70321 5.77449 6.01819 6.29140 6.47164 6.69558 7.26771 8.83613 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.002500 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.358516 B =11196.565406 C =12129.880477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.005 4.005 3 Si 0.977 3.023 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.577 4.577 11 S 2.598 3.402 12 O -0.971 6.971 13 O -0.984 6.984 14 N -1.035 6.035 15 C 0.527 3.473 16 O -0.530 6.530 17 C -0.129 4.129 18 C 0.078 3.922 19 H 0.084 0.916 20 C -0.091 4.091 21 C -0.185 4.185 22 C -0.074 4.074 23 C -0.152 4.152 24 C -0.090 4.090 25 C -0.167 4.167 26 C 0.071 3.929 27 O -0.326 6.326 28 H 0.268 0.732 29 H 0.016 0.984 30 H 0.001 0.999 31 H 0.132 0.868 32 H 0.155 0.845 33 H 0.453 0.547 34 H 0.182 0.818 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.766 -24.140 3.094 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.710 4.710 11 S 2.697 3.303 12 O -0.962 6.962 13 O -0.974 6.974 14 N -0.803 5.803 15 C 0.315 3.685 16 O -0.404 6.404 17 C -0.169 4.169 18 C 0.022 3.978 19 H 0.101 0.899 20 C -0.128 4.128 21 C -0.186 4.186 22 C -0.092 4.092 23 C -0.169 4.169 24 C -0.108 4.108 25 C -0.186 4.186 26 C 0.026 3.974 27 O -0.241 6.241 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.020 0.980 31 H 0.151 0.849 32 H 0.173 0.827 33 H 0.294 0.706 34 H 0.199 0.801 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.345 -23.687 3.781 30.816 hybrid contribution -0.056 1.246 -0.108 1.252 sum 19.289 -22.441 3.673 29.819 Atomic orbital electron populations 1.70102 1.08072 1.28423 1.50694 1.26151 0.95929 1.03983 0.94270 0.85269 0.78482 0.77403 0.78838 1.19053 1.20836 1.18425 1.21476 0.93944 0.90683 1.51796 0.90694 1.18827 0.93506 0.92872 0.96511 1.30219 1.12794 1.15512 1.12460 1.05371 0.74915 0.77014 0.72992 1.93559 1.71591 1.85551 1.45468 1.93552 1.72111 1.84987 1.46733 1.54816 1.48135 1.49292 1.28065 1.21524 0.82121 0.85181 0.79662 1.90948 1.70430 1.45025 1.33961 1.22205 0.96315 0.99039 0.99349 1.23395 0.90291 0.99194 0.84950 0.89854 1.21889 0.98818 0.99252 0.92837 1.21157 0.95665 1.04510 0.97242 1.20707 0.98542 0.96040 0.93863 1.21451 0.98027 1.02159 0.95305 1.21191 0.92867 0.96160 1.00578 1.20582 1.02082 1.05120 0.90800 1.20020 0.91072 0.94877 0.91381 1.86959 1.34031 1.71371 1.31698 0.92303 0.96599 0.98035 0.84947 0.82692 0.70639 0.80067 0.84077 0.86190 0.86122 0.82888 0.82720 0.83191 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.98 44.11 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.54 -30.76 9.11 25.60 0.23 -30.53 16 8 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 9 C 0.02 1.18 4.98 29.85 0.15 1.33 16 10 C -0.58 -22.98 5.82 71.98 0.42 -22.56 16 11 S 2.60 94.83 5.11 -56.49 -0.29 94.54 16 12 O -0.97 -38.03 18.08 -127.65 -2.31 -40.34 16 13 O -0.98 -45.67 17.04 -120.71 -2.06 -47.73 16 14 N -1.03 -23.10 5.60 -173.54 -0.97 -24.08 16 15 C 0.53 12.66 7.52 87.66 0.66 13.32 16 16 O -0.53 -18.99 13.78 17.69 0.24 -18.74 16 17 C -0.13 -1.50 5.38 29.85 0.16 -1.33 16 18 C 0.08 1.38 3.04 31.17 0.09 1.48 16 19 H 0.08 1.70 7.88 -2.39 -0.02 1.68 16 20 C -0.09 -0.95 6.65 30.73 0.20 -0.74 16 21 C -0.18 -3.13 6.27 -19.52 -0.12 -3.26 16 22 C -0.07 -0.96 10.03 22.18 0.22 -0.73 16 23 C -0.15 -1.93 10.07 22.31 0.22 -1.70 16 24 C -0.09 -1.44 10.02 22.21 0.22 -1.22 16 25 C -0.17 -3.74 10.06 22.45 0.23 -3.51 16 26 C 0.07 1.72 7.03 22.67 0.16 1.88 16 27 O -0.33 -8.87 10.52 -92.66 -0.97 -9.84 16 28 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.13 5.25 7.19 -2.39 -0.02 5.23 16 32 H 0.16 4.97 8.14 -2.39 -0.02 4.95 16 33 H 0.45 5.22 8.79 -96.74 -0.85 4.37 16 34 H 0.18 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.14 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.12 0.61 7.92 -2.39 -0.02 0.59 16 38 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 41 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -93.05 364.64 -0.52 -93.57 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.21 Total: 11.41 kcal Atomic # 6 Polarization: -50.72 SS G_CDS: 3.31 Total: -47.40 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -0.69 Total: -81.59 kcal Atomic # 8 Polarization: -111.56 SS G_CDS: -5.10 Total: -116.66 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 94.83 SS G_CDS: -0.29 Total: 94.54 kcal Total: -93.05 -0.52 -93.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870269793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.264 kcal (2) G-P(sol) polarization free energy of solvation -93.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds