Wall clock time and date at job start Tue Mar 31 2020 22:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38658 * 120.79298 * 2 1 4 4 C 1.38185 * 119.17210 * 180.02562 * 3 2 1 5 5 N 1.31891 * 120.78850 * 359.97438 * 4 3 2 6 6 C 1.31837 * 121.73351 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.62245 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.47460 * 90.00122 * 7 6 5 9 9 C 1.46891 * 111.00538 * 189.99759 * 8 7 6 10 10 C 1.53236 * 109.34490 * 187.25409 * 9 8 7 11 11 N 1.47086 * 108.51747 * 306.17144 * 10 9 8 12 12 C 1.36936 * 120.87786 * 231.18160 * 11 10 9 13 13 H 1.07993 * 120.00304 * 27.13527 * 12 11 10 14 14 C 1.38813 * 119.99575 * 206.85386 * 12 11 10 15 15 N 1.31614 * 120.00290 * 17.16731 * 14 12 11 16 16 Si 1.86810 * 119.99564 * 197.16760 * 14 12 11 17 17 H 1.48494 * 109.47108 * 60.00166 * 16 14 12 18 18 H 1.48503 * 109.46632 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47043 * 300.00011 * 16 14 12 20 20 C 1.47083 * 118.23837 * 51.45711 * 11 10 9 21 21 C 1.46900 * 110.99950 * 314.30370 * 8 7 6 22 22 C 1.38320 * 120.75268 * 0.27312 * 6 5 4 23 23 Br 1.89102 * 120.43226 * 179.70124 * 22 6 5 24 24 H 1.08997 * 109.47317 * 90.00047 * 1 2 3 25 25 H 1.08999 * 109.47074 * 210.00131 * 1 2 3 26 26 H 1.09005 * 109.46708 * 329.99530 * 1 2 3 27 27 H 1.07994 * 120.41148 * 0.04545 * 3 2 1 28 28 H 1.07997 * 119.60631 * 180.02562 * 4 3 2 29 29 H 1.08997 * 109.47436 * 330.00274 * 7 6 5 30 30 H 1.09001 * 109.46989 * 209.99990 * 7 6 5 31 31 H 1.09002 * 109.49046 * 67.29429 * 9 8 7 32 32 H 1.08999 * 109.49556 * 307.21622 * 9 8 7 33 33 H 1.08998 * 109.63090 * 186.46185 * 10 9 8 34 34 H 1.09003 * 109.78826 * 65.97260 * 10 9 8 35 35 H 0.97001 * 119.99757 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.62320 * 68.25155 * 20 11 10 37 37 H 1.08997 * 109.62861 * 188.82856 * 20 11 10 38 38 H 1.09000 * 109.49232 * 292.70484 * 21 8 7 39 39 H 1.09005 * 109.49167 * 52.75416 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1911 0.0000 4 6 3.5982 1.1520 -0.0005 5 7 4.2410 0.0004 -0.0005 6 6 3.5998 -1.1516 -0.0005 7 6 4.3823 -2.4396 0.0000 8 7 4.6360 -2.8579 1.3852 9 6 5.5916 -3.9724 1.4320 10 6 5.6908 -4.4961 2.8687 11 7 6.0080 -3.3671 3.7565 12 6 7.0508 -3.4402 4.6411 13 1 7.8943 -4.0806 4.4298 14 6 7.0263 -2.6864 5.8065 15 7 5.8925 -2.1734 6.2348 16 14 8.6029 -2.4002 6.7669 17 1 9.5866 -1.6967 5.9053 18 1 8.3100 -1.5699 7.9628 19 1 9.1651 -3.7060 7.1958 20 6 5.1717 -2.1600 3.6733 21 6 5.0967 -1.7263 2.2008 22 6 2.2172 -1.1915 -0.0062 23 35 1.3068 -2.8490 -0.0146 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6967 2.1375 0.0007 28 1 4.1581 2.0755 -0.0001 29 1 5.3317 -2.2882 -0.5134 30 1 3.8104 -3.2123 -0.5139 31 1 6.5712 -3.6257 1.1028 32 1 5.2494 -4.7728 0.7760 33 1 6.4804 -5.2447 2.9319 34 1 4.7407 -4.9400 3.1661 35 1 5.8755 -1.6465 7.0490 36 1 4.1711 -2.3817 4.0444 37 1 5.6181 -1.3636 4.2688 38 1 6.0831 -1.4108 1.8609 39 1 4.3956 -0.8974 2.1020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876676920.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:51 Heat of formation + Delta-G solvation = 56.439433 kcal Electronic energy + Delta-G solvation = -21848.535946 eV Core-core repulsion = 18644.521942 eV Total energy + Delta-G solvation = -3204.014004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 339.064 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60234 -39.50991 -36.45622 -35.20731 -33.98903 -32.72342 -31.64035 -30.84240 -29.14051 -28.55461 -26.52858 -24.55725 -24.22759 -23.58624 -21.87967 -20.81763 -18.75732 -17.98320 -17.19873 -17.16131 -16.46089 -16.37772 -15.65867 -15.50770 -15.26637 -15.25555 -14.79515 -14.72492 -14.07976 -13.79597 -13.69903 -13.53236 -13.29227 -13.02814 -12.94433 -12.58953 -12.53177 -12.33452 -12.15996 -12.06661 -11.93079 -11.63066 -11.47017 -11.13680 -10.59225 -10.43933 -10.37404 -9.86255 -9.27236 -8.69501 -7.88035 -5.33042 -0.13663 0.11220 0.60583 1.45441 1.48602 1.55281 2.49185 2.51403 3.06904 3.23250 3.28220 3.53552 3.66915 3.71609 3.92903 4.21543 4.24076 4.31784 4.35330 4.42590 4.52663 4.61856 4.64554 4.67238 4.72741 4.73012 4.86114 4.89400 5.02071 5.15528 5.16325 5.18549 5.35076 5.57097 5.60037 5.62818 6.09491 6.15613 6.36337 6.87899 7.11807 7.82606 8.37900 9.19005 Molecular weight = 339.06amu Principal moments of inertia in cm(-1) A = 0.018148 B = 0.003888 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.488319 B = 7200.578998 C = 7814.337952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.023 4.023 3 C -0.164 4.164 4 C 0.105 3.895 5 N -0.506 5.506 6 C 0.150 3.850 7 C 0.097 3.903 8 N -0.523 5.523 9 C 0.055 3.945 10 C 0.146 3.854 11 N -0.613 5.613 12 C -0.266 4.266 13 H 0.069 0.931 14 C -0.051 4.051 15 N -0.937 5.937 16 Si 0.969 3.031 17 H -0.280 1.280 18 H -0.293 1.293 19 H -0.273 1.273 20 C 0.192 3.808 21 C 0.068 3.932 22 C -0.147 4.147 23 Br -0.022 7.022 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.179 0.821 28 H 0.187 0.813 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.025 0.975 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.018 0.982 35 H 0.250 0.750 36 H -0.005 1.005 37 H 0.053 0.947 38 H 0.013 0.987 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 5.086 -18.450 23.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.033 4.033 3 C -0.185 4.185 4 C -0.052 4.052 5 N -0.217 5.217 6 C 0.011 3.989 7 C -0.031 4.031 8 N -0.248 5.248 9 C -0.073 4.073 10 C 0.020 3.980 11 N -0.337 5.337 12 C -0.396 4.396 13 H 0.087 0.913 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.797 3.203 17 H -0.206 1.206 18 H -0.219 1.219 19 H -0.198 1.198 20 C 0.066 3.934 21 C -0.061 4.061 22 C -0.230 4.230 23 Br 0.063 6.937 24 H 0.118 0.882 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.197 0.803 28 H 0.204 0.796 29 H 0.065 0.935 30 H 0.126 0.874 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.013 0.987 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.823 4.346 -18.114 22.615 hybrid contribution 0.916 0.869 0.615 1.404 sum -11.908 5.216 -17.499 21.800 Atomic orbital electron populations 1.21069 0.87309 1.04884 1.04614 1.20690 0.98832 0.91075 0.92661 1.22437 0.94960 0.99446 1.01611 1.23423 0.93070 0.96165 0.92568 1.67685 1.41596 0.98671 1.13740 1.21005 0.89945 0.94231 0.93686 1.21206 0.98548 0.92420 0.90925 1.62090 1.46118 1.08122 1.08447 1.22523 0.92875 0.93659 0.98283 1.21125 0.97917 0.89875 0.89054 1.44397 1.34559 1.12217 1.42523 1.19528 0.96392 1.25402 0.98301 0.91294 1.25811 0.99507 1.01932 0.97349 1.70194 1.25635 1.39147 1.23331 0.85318 0.79501 0.77987 0.77519 1.20585 1.21878 1.19817 1.20628 0.92031 0.89412 0.91320 1.22491 0.96469 0.92324 0.94864 1.22843 0.95178 0.93866 1.11071 1.96647 1.75245 1.24389 1.97402 0.88244 0.90861 0.88441 0.80341 0.79631 0.93452 0.87404 0.95699 0.88138 0.91700 0.96363 0.94088 0.98733 0.92890 0.96855 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 9.62 71.24 0.69 -1.06 16 2 C -0.02 -0.48 5.92 -19.65 -0.12 -0.59 16 3 C -0.16 -2.95 9.82 22.36 0.22 -2.73 16 4 C 0.10 2.32 11.18 84.67 0.95 3.27 16 5 N -0.51 -15.19 9.05 -183.82 -1.66 -16.85 16 6 C 0.15 4.53 4.69 42.58 0.20 4.73 16 7 C 0.10 3.00 5.12 85.56 0.44 3.44 16 8 N -0.52 -19.50 4.77 -898.91 -4.29 -23.79 16 9 C 0.06 2.01 5.58 86.38 0.48 2.49 16 10 C 0.15 6.39 6.69 86.35 0.58 6.97 16 11 N -0.61 -32.86 3.03 -697.24 -2.11 -34.97 16 12 C -0.27 -15.29 9.63 84.03 0.81 -14.48 16 13 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 14 C -0.05 -2.94 4.93 84.86 0.42 -2.52 16 15 N -0.94 -57.57 11.16 21.65 0.24 -57.33 16 16 Si 0.97 46.14 29.59 68.60 2.03 48.17 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 C 0.19 10.19 5.45 86.50 0.47 10.67 16 21 C 0.07 2.97 5.01 86.54 0.43 3.40 16 22 C -0.15 -3.88 6.24 22.40 0.14 -3.74 16 23 Br -0.02 -0.54 30.06 -20.37 -0.61 -1.15 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.20 6.80 -2.39 -0.02 1.19 16 26 H 0.10 1.00 8.10 -2.38 -0.02 0.98 16 27 H 0.18 1.75 8.06 -2.91 -0.02 1.72 16 28 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.05 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.11 2.95 6.63 -2.39 -0.02 2.93 16 31 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 2.91 8.11 -2.39 -0.02 2.89 16 33 H 0.06 2.68 7.95 -2.39 -0.02 2.66 16 34 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H 0.05 3.13 6.12 -2.39 -0.01 3.12 16 38 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 2.52 5.84 -2.38 -0.01 2.50 16 Total: -1.00 -70.36 329.51 0.34 -70.02 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.05 Total: 6.05 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 5.71 Total: 9.84 kcal Atomic # 7 Polarization: -125.12 SS G_CDS: -7.82 Total: -132.94 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -0.61 Total: -1.15 kcal Total: -70.36 0.34 -70.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876676920.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.459 kcal (2) G-P(sol) polarization free energy of solvation -70.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds