Wall clock time and date at job start Tue Mar 31 2020 22:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38118 * 120.05080 * 2 1 4 4 C 1.38257 * 120.92037 * 180.02562 * 3 2 1 5 5 C 1.38867 * 119.71627 * 359.92866 * 4 3 2 6 6 C 1.36505 * 119.13834 * 0.04939 * 5 4 3 7 7 C 1.38972 * 120.05279 * 179.97438 * 2 1 3 8 8 N 1.38679 * 121.36564 * 0.04509 * 7 2 1 9 9 C 1.32367 * 130.50757 * 180.02562 * 8 7 2 10 10 O 1.21582 * 116.77321 * 179.97438 * 9 8 7 11 11 N 1.35365 * 126.44944 * 359.94604 * 9 8 7 12 12 C 1.46496 * 122.59088 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.47170 * 85.00631 * 12 11 9 14 14 O 1.21298 * 119.99784 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00512 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00058 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99887 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99875 * 179.97438 * 16 15 13 19 19 N 1.31418 * 120.00015 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99961 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47419 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46884 * 120.00354 * 20 18 16 23 23 H 1.48491 * 109.47436 * 240.00090 * 20 18 16 24 24 S 1.68033 * 114.82096 * 0.06515 * 11 9 8 25 25 O 1.42094 * 105.51017 * 245.28534 * 24 11 9 26 26 O 1.42104 * 105.57334 * 114.63517 * 24 11 9 27 27 H 1.08999 * 109.46855 * 270.02447 * 1 2 3 28 28 H 1.08999 * 109.46908 * 30.02062 * 1 2 3 29 29 H 1.08995 * 109.47041 * 150.01930 * 1 2 3 30 30 H 1.08004 * 119.54283 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.14578 * 179.97438 * 4 3 2 32 32 H 1.08005 * 120.43257 * 180.31826 * 5 4 3 33 33 H 0.96992 * 114.74549 * 359.97375 * 8 7 2 34 34 H 1.09004 * 109.47880 * 205.00302 * 12 11 9 35 35 H 1.08993 * 109.47340 * 325.00896 * 12 11 9 36 36 H 0.96999 * 119.99455 * 359.97438 * 15 13 12 37 37 H 0.96998 * 119.99551 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.1955 0.0000 4 6 3.5811 1.2165 -0.0005 5 6 4.2877 0.0210 0.0004 6 6 3.5995 -1.1578 0.0009 7 6 2.2030 -1.2029 0.0005 8 7 1.5395 -2.4207 0.0002 9 6 2.0120 -3.6572 0.0010 10 8 1.1935 -4.5562 0.0008 11 7 3.3162 -4.0198 0.0015 12 6 3.7457 -5.4204 0.0029 13 6 3.7749 -5.9384 -1.4120 14 8 3.4667 -5.2094 -2.3312 15 7 4.1425 -7.2118 -1.6560 16 6 4.1685 -7.6831 -2.9432 17 1 3.8948 -7.0338 -3.7616 18 6 4.5480 -8.9959 -3.1948 19 7 4.8815 -9.7859 -2.1989 20 14 4.5841 -9.6379 -4.9486 21 1 4.1684 -8.5582 -5.8797 22 1 5.9615 -10.0788 -5.2860 23 1 3.6519 -10.7868 -5.0746 24 16 4.4043 -2.7394 0.0026 25 8 5.0872 -2.8200 -1.2408 26 8 5.0855 -2.8188 1.2472 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6520 2.1270 -0.0004 31 1 4.1092 2.1586 -0.0009 32 1 5.3677 0.0239 0.0052 33 1 0.5718 -2.3558 -0.0001 34 1 4.7427 -5.4943 0.4374 35 1 3.0474 -6.0140 0.5928 36 1 4.3886 -7.7949 -0.9209 37 1 5.1460 -10.7024 -2.3746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189885275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:44 Heat of formation + Delta-G solvation = -109.929758 kcal Electronic energy + Delta-G solvation = -27581.009565 eV Core-core repulsion = 23450.419549 eV Total energy + Delta-G solvation = -4130.590016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.65179 -40.85699 -39.96189 -38.55406 -37.46544 -36.75608 -36.59292 -35.83697 -34.17513 -33.38193 -31.22770 -29.89360 -28.19379 -26.81625 -25.21047 -23.54980 -22.85906 -21.69868 -20.99328 -20.19197 -19.78598 -19.40543 -18.56746 -18.05724 -17.45305 -17.37512 -16.92930 -16.62954 -16.46417 -16.31036 -15.82595 -15.70967 -15.50346 -15.21351 -14.90808 -14.53070 -14.03081 -13.72762 -13.64550 -13.58017 -13.44713 -13.43124 -13.33579 -13.15220 -12.86241 -12.50594 -12.46516 -12.35394 -12.16228 -12.13586 -11.95744 -11.79379 -11.57702 -10.43707 -10.41071 -10.08717 -9.39394 -8.51471 -6.00936 -1.56928 -0.46488 -0.02544 0.54418 1.30514 1.33507 1.39986 1.54756 1.61386 1.88363 1.89661 2.26807 2.33245 2.88892 3.00095 3.15044 3.17549 3.36916 3.72596 3.91991 3.94140 3.99403 4.08898 4.20679 4.32231 4.34576 4.52408 4.58969 4.74765 4.84680 5.03616 5.18917 5.24852 5.28628 5.37256 5.57478 5.79470 5.90485 6.38600 6.50342 7.04435 7.41824 7.96908 8.65917 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.003337 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.737709 B = 8388.611399 C = 8734.625756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.118 4.118 3 C -0.025 4.025 4 C -0.135 4.135 5 C 0.000 4.000 6 C -0.683 4.683 7 C 0.193 3.807 8 N -0.651 5.651 9 C 0.699 3.301 10 O -0.557 6.557 11 N -0.903 5.903 12 C 0.127 3.873 13 C 0.417 3.583 14 O -0.615 6.615 15 N -0.561 5.561 16 C -0.337 4.337 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.914 5.914 20 Si 0.996 3.004 21 H -0.276 1.276 22 H -0.267 1.267 23 H -0.267 1.267 24 S 2.635 3.365 25 O -0.957 6.957 26 O -0.949 6.949 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.187 0.813 31 H 0.183 0.817 32 H 0.156 0.844 33 H 0.442 0.558 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.401 0.599 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 24.705 10.074 27.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.122 4.122 3 C -0.043 4.043 4 C -0.155 4.155 5 C -0.020 4.020 6 C -0.779 4.779 7 C 0.095 3.905 8 N -0.301 5.301 9 C 0.399 3.601 10 O -0.430 6.430 11 N -0.749 5.749 12 C 0.001 3.999 13 C 0.202 3.798 14 O -0.501 6.501 15 N -0.198 5.198 16 C -0.466 4.466 17 H 0.096 0.904 18 C -0.210 4.210 19 N -0.554 5.554 20 Si 0.819 3.181 21 H -0.200 1.200 22 H -0.192 1.192 23 H -0.192 1.192 24 S 2.734 3.266 25 O -0.946 6.946 26 O -0.938 6.938 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.204 0.796 31 H 0.200 0.800 32 H 0.173 0.827 33 H 0.287 0.713 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.235 0.765 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.349 24.093 9.486 26.660 hybrid contribution -0.368 -0.947 -0.573 1.167 sum -6.717 23.146 8.914 25.696 Atomic orbital electron populations 1.20965 0.87490 1.04804 1.04652 1.20029 0.98344 0.89746 1.04118 1.21768 0.94366 0.98039 0.90168 1.21905 0.94719 0.98270 1.00633 1.20675 1.01146 0.90078 0.90137 1.29146 1.03233 1.18101 1.27442 1.17465 0.89980 0.86058 0.97002 1.42255 1.14207 1.00614 1.73048 1.15308 0.83416 0.83721 0.77698 1.90991 1.53688 1.44875 1.53460 1.55777 1.16741 1.21356 1.81040 1.21322 1.04691 0.78174 0.95738 1.20853 0.83969 0.83361 0.91604 1.90520 1.54717 1.57847 1.47056 1.41785 1.58842 1.09983 1.09171 1.19710 1.45190 0.96596 0.85123 0.90413 1.26090 0.95636 0.95360 1.03898 1.69671 1.44709 1.08097 1.32957 0.84834 0.78556 0.77981 0.76693 1.20044 1.19215 1.19225 1.04002 0.73685 0.74439 0.74511 1.93626 1.69373 1.86337 1.45312 1.93571 1.68637 1.86943 1.44680 0.88472 0.87444 0.91917 0.79566 0.79989 0.82687 0.71343 0.83931 0.83798 0.76451 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 9.55 71.24 0.68 -0.19 16 2 C -0.12 -1.61 5.90 -19.72 -0.12 -1.73 16 3 C -0.03 -0.21 9.64 22.25 0.21 0.00 16 4 C -0.14 -1.41 10.09 22.42 0.23 -1.19 16 5 C 0.00 0.00 9.88 22.02 0.22 0.21 16 6 C -0.68 -17.92 5.82 22.22 0.13 -17.79 16 7 C 0.19 4.40 6.70 38.59 0.26 4.66 16 8 N -0.65 -17.08 4.96 -320.13 -1.59 -18.67 16 9 C 0.70 25.07 8.25 179.61 1.48 26.56 16 10 O -0.56 -22.92 16.55 -3.97 -0.07 -22.98 16 11 N -0.90 -34.60 2.49 -483.46 -1.20 -35.81 16 12 C 0.13 5.04 6.04 85.64 0.52 5.56 16 13 C 0.42 21.85 7.84 87.66 0.69 22.54 16 14 O -0.62 -37.22 15.95 -3.08 -0.05 -37.27 16 15 N -0.56 -30.60 5.29 -306.97 -1.62 -32.22 16 16 C -0.34 -20.10 9.68 84.04 0.81 -19.29 16 17 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 18 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 19 N -0.91 -50.31 13.05 21.66 0.28 -50.03 16 20 Si 1.00 44.38 29.55 68.60 2.03 46.41 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 S 2.64 93.49 5.41 -56.49 -0.31 93.18 16 25 O -0.96 -42.29 17.98 -127.84 -2.30 -44.59 16 26 O -0.95 -33.88 17.98 -127.84 -2.30 -36.18 16 27 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 0.25 8.09 -2.39 -0.02 0.23 16 29 H 0.06 0.55 6.55 -2.39 -0.02 0.54 16 30 H 0.19 -0.12 8.06 -2.91 -0.02 -0.15 16 31 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 32 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.44 8.93 6.18 -92.71 -0.57 8.36 16 34 H 0.14 4.67 8.09 -2.38 -0.02 4.65 16 35 H 0.14 4.99 7.63 -2.39 -0.02 4.98 16 36 H 0.40 20.26 7.90 -92.71 -0.73 19.53 16 37 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -90.32 337.62 -1.68 -92.00 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: -0.14 Total: 26.87 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: 5.58 Total: 19.29 kcal Atomic # 7 Polarization: -132.59 SS G_CDS: -4.13 Total: -136.72 kcal Atomic # 8 Polarization: -136.31 SS G_CDS: -4.71 Total: -141.02 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 93.49 SS G_CDS: -0.31 Total: 93.18 kcal Total: -90.32 -1.68 -92.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189885275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.930 kcal (2) G-P(sol) polarization free energy of solvation -90.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds