Wall clock time and date at job start Tue Mar 31 2020 22:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99759 * 2 1 4 4 O 1.20823 * 120.00115 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99685 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46864 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47062 * 175.56715 * 6 5 3 8 8 C 1.36934 * 120.00431 * 275.55451 * 7 6 5 9 9 H 1.08001 * 120.00135 * 140.85017 * 8 7 6 10 10 C 1.38812 * 120.00115 * 320.84448 * 8 7 6 11 11 N 1.31617 * 120.00135 * 161.66071 * 10 8 7 12 12 Si 1.86804 * 119.99942 * 341.66836 * 10 8 7 13 13 H 1.48498 * 109.47142 * 95.20969 * 12 10 8 14 14 H 1.48494 * 109.47059 * 215.20905 * 12 10 8 15 15 H 1.48500 * 109.46771 * 335.21315 * 12 10 8 16 16 S 1.65602 * 119.99721 * 95.55267 * 7 6 5 17 17 O 1.42096 * 106.40667 * 203.54015 * 16 7 6 18 18 O 1.42107 * 106.40243 * 336.45981 * 16 7 6 19 19 C 1.76202 * 107.21770 * 90.00018 * 16 7 6 20 20 C 1.38690 * 120.31136 * 90.00284 * 19 16 7 21 21 C 1.38489 * 118.51017 * 180.02562 * 20 19 16 22 22 C 1.39458 * 119.05057 * 0.02562 * 21 20 19 23 23 C 1.43200 * 119.73746 * 180.02562 * 22 21 20 24 24 N 9.83213 * 164.14682 * 76.86728 * 4 1 2 25 25 N 1.32791 * 120.52301 * 0.02562 * 22 21 20 26 26 C 1.31587 * 121.62112 * 359.66379 * 25 22 21 27 27 H 1.09001 * 109.47406 * 299.99999 * 1 2 3 28 28 H 1.08994 * 109.47283 * 60.00553 * 1 2 3 29 29 H 1.09001 * 109.46962 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47332 * 59.99760 * 5 3 2 31 31 H 1.09000 * 109.46922 * 299.99142 * 5 3 2 32 32 H 1.08995 * 109.47309 * 295.57244 * 6 5 3 33 33 H 1.09002 * 109.46756 * 55.57191 * 6 5 3 34 34 H 0.96996 * 120.00298 * 180.02562 * 11 10 8 35 35 H 1.08007 * 120.74194 * 0.02562 * 20 19 16 36 36 H 1.08005 * 120.47628 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.54325 * 180.31090 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 -0.0011 7 7 5.4591 2.8200 0.1051 8 6 6.0599 2.7680 1.3345 9 1 6.9817 2.2199 1.4623 10 6 5.4843 3.4198 2.4165 11 7 5.8318 3.0922 3.6429 12 14 4.2164 4.7618 2.1318 13 1 2.8527 4.1801 2.2155 14 1 4.3696 5.8152 3.1672 15 1 4.4190 5.3567 0.7864 16 16 6.3818 2.9710 -1.2617 17 8 7.6723 2.4764 -0.9314 18 8 5.6019 2.4544 -2.3315 19 6 6.5743 4.6945 -1.5734 20 6 7.6426 5.3897 -1.0265 21 6 7.7574 6.7434 -1.2953 22 6 6.7996 7.3573 -2.1018 23 6 6.9043 8.7562 -2.3896 24 7 6.9893 9.8655 -2.6177 25 7 5.7911 6.6550 -2.6050 26 6 5.6625 5.3667 -2.3698 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9557 0.7810 -0.8907 31 1 3.9563 0.7807 0.8892 32 1 3.6773 3.2161 -0.9280 33 1 3.5462 3.2554 0.8466 34 1 5.4294 3.5474 4.3990 35 1 8.3686 4.8866 -0.4050 36 1 8.5770 7.3155 -0.8861 37 1 4.8319 4.8271 -2.8002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193850855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:26 Heat of formation + Delta-G solvation = -71.918434 kcal Electronic energy + Delta-G solvation = -27303.702977 eV Core-core repulsion = 23174.761256 eV Total energy + Delta-G solvation = -4128.941721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27782 -40.18030 -36.97974 -36.64845 -36.24010 -36.05162 -34.81934 -32.75434 -32.63292 -31.66127 -30.76862 -27.67583 -25.22395 -24.98132 -23.74238 -23.52741 -20.64015 -19.53292 -18.82939 -17.89598 -17.55926 -16.92855 -16.78814 -16.62010 -16.46459 -16.20699 -15.47212 -14.86742 -14.70896 -14.35324 -14.00791 -13.98325 -13.48999 -13.31815 -13.24964 -12.97940 -12.94209 -12.84132 -12.78506 -12.67138 -12.43642 -11.91444 -11.64204 -11.28718 -11.12886 -11.10372 -10.95116 -10.71618 -10.69066 -10.51699 -10.32079 -10.19399 -10.03146 -9.60593 -9.38258 -9.30814 -8.55171 -7.00698 -4.50469 0.26804 1.20506 1.24047 2.38963 2.42048 2.65766 2.83111 2.92381 2.99612 3.02735 3.40569 3.69374 3.74540 3.92474 4.40861 4.56724 4.58579 4.78730 4.98693 4.99397 5.10468 5.12131 5.18462 5.29138 5.34162 5.41192 5.54056 5.64603 5.77986 5.81813 5.99145 6.04812 6.22930 6.46800 6.53108 6.60838 7.06473 7.19221 7.63222 7.88171 7.93067 8.48918 8.55510 10.02984 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.012080 B = 0.004362 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.393143 B = 6417.826454 C = 6706.125359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.513 6.513 5 C -0.127 4.127 6 C 0.131 3.869 7 N -0.821 5.821 8 C -0.246 4.246 9 H 0.133 0.867 10 C 0.069 3.931 11 N -0.807 5.807 12 Si 0.872 3.128 13 H -0.258 1.258 14 H -0.281 1.281 15 H -0.256 1.256 16 S 2.526 3.474 17 O -0.962 6.962 18 O -0.991 6.991 19 C -0.686 4.686 20 C 0.022 3.978 21 C -0.142 4.142 22 C 0.207 3.793 23 C 0.273 3.727 24 N -0.395 5.395 25 N -0.469 5.469 26 C 0.186 3.814 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.287 0.713 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.826 -2.405 -3.033 5.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.400 6.400 5 C -0.166 4.166 6 C 0.005 3.995 7 N -0.644 5.644 8 C -0.396 4.396 9 H 0.150 0.850 10 C -0.149 4.149 11 N -0.442 5.442 12 Si 0.698 3.302 13 H -0.184 1.184 14 H -0.208 1.208 15 H -0.180 1.180 16 S 2.627 3.373 17 O -0.951 6.951 18 O -0.981 6.981 19 C -0.765 4.765 20 C -0.004 4.004 21 C -0.165 4.165 22 C 0.070 3.930 23 C -0.044 4.044 24 N -0.072 5.072 25 N -0.180 5.180 26 C 0.026 3.974 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.136 -0.500 -4.594 6.202 hybrid contribution -0.391 0.875 0.724 1.201 sum -4.527 0.375 -3.870 5.967 Atomic orbital electron populations 1.23218 0.76935 1.03345 1.02427 1.86533 1.23010 1.33797 1.84309 1.23917 0.92233 0.81107 0.71604 1.90652 1.67424 1.36320 1.45646 1.21816 0.86372 1.00872 1.07580 1.21129 0.81214 0.94317 1.02888 1.54017 1.12477 1.76935 1.20958 1.19549 1.11810 1.27084 0.81192 0.85012 1.25874 0.97629 0.96319 0.95111 1.69771 1.38890 1.36999 0.98562 0.86945 0.81639 0.81800 0.79807 1.18375 1.20777 1.17998 1.11918 0.74934 0.75636 0.74855 1.93410 1.40152 1.78059 1.83487 1.93382 1.70043 1.78461 1.56202 1.33672 1.02244 1.34411 1.06173 1.21409 0.94322 0.92597 0.92078 1.22113 0.99554 0.96203 0.98604 1.16516 0.93406 0.86579 0.96530 1.25070 0.93694 0.91878 0.93808 1.81199 1.07364 1.11389 1.07237 1.67580 1.20008 1.08893 1.21491 1.22487 0.96094 0.88311 0.90527 0.92051 0.92024 0.88360 0.86601 0.85670 0.89944 0.91033 0.90206 0.81946 0.83340 0.80647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.99 10.57 -39.26 -0.41 -5.40 16 3 C 0.47 7.50 7.96 36.01 0.29 7.79 16 4 O -0.51 -9.36 15.68 -18.75 -0.29 -9.65 16 5 C -0.13 -2.02 6.10 -27.88 -0.17 -2.19 16 6 C 0.13 2.39 3.62 -4.04 -0.01 2.37 16 7 N -0.82 -15.98 2.46 -59.91 -0.15 -16.12 16 8 C -0.25 -5.24 9.53 -15.06 -0.14 -5.39 16 9 H 0.13 3.02 7.65 -52.49 -0.40 2.62 16 10 C 0.07 1.51 5.38 -17.43 -0.09 1.41 16 11 N -0.81 -18.48 13.97 55.49 0.78 -17.71 16 12 Si 0.87 17.64 24.83 -169.99 -4.22 13.42 16 13 H -0.26 -5.24 6.74 56.52 0.38 -4.85 16 14 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.26 -5.08 7.10 56.52 0.40 -4.68 16 16 S 2.53 48.50 5.61 -107.50 -0.60 47.89 16 17 O -0.96 -20.58 16.31 -57.17 -0.93 -21.51 16 18 O -0.99 -19.64 16.26 -57.17 -0.93 -20.57 16 19 C -0.69 -11.89 6.00 -39.33 -0.24 -12.12 16 20 C 0.02 0.35 9.64 -39.32 -0.38 -0.03 16 21 C -0.14 -1.92 9.80 -39.03 -0.38 -2.30 16 22 C 0.21 3.15 6.58 -85.07 -0.56 2.59 16 23 C 0.27 4.06 15.53 -22.48 -0.35 3.71 16 24 N -0.40 -6.23 18.54 41.83 0.78 -5.46 16 25 N -0.47 -7.82 10.28 -11.16 -0.11 -7.94 16 26 C 0.19 3.10 10.68 -17.57 -0.19 2.92 16 27 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.13 1.92 8.14 -51.93 -0.42 1.49 16 32 H 0.08 1.39 7.59 -51.93 -0.39 0.99 16 33 H 0.07 1.38 2.76 -51.93 -0.14 1.24 16 34 H 0.29 6.11 8.31 -40.82 -0.34 5.77 16 35 H 0.16 2.30 7.70 -52.48 -0.40 1.90 16 36 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.18 2.62 7.62 -52.49 -0.40 2.22 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -27.79 347.20 -5.47 -33.26 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.43 Total: 4.38 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -1.16 Total: 0.17 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 1.29 Total: -47.22 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -2.57 Total: -57.14 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -4.22 Total: 13.42 kcal Atomic # 16 Polarization: 48.50 SS G_CDS: -0.60 Total: 47.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.79 -5.47 -33.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193850855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.655 kcal (2) G-P(sol) polarization free energy of solvation -27.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds