Wall clock time and date at job start Tue Mar 31 2020 22:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34233 * 116.99759 * 2 1 4 4 O 1.20823 * 120.00115 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99685 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.46864 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47062 * 175.56715 * 6 5 3 8 8 C 1.36934 * 120.00431 * 275.55451 * 7 6 5 9 9 H 1.08001 * 120.00135 * 140.85017 * 8 7 6 10 10 C 1.38812 * 120.00115 * 320.84448 * 8 7 6 11 11 N 1.31617 * 120.00135 * 161.66071 * 10 8 7 12 12 Si 1.86804 * 119.99942 * 341.66836 * 10 8 7 13 13 H 1.48498 * 109.47142 * 95.20969 * 12 10 8 14 14 H 1.48494 * 109.47059 * 215.20905 * 12 10 8 15 15 H 1.48500 * 109.46771 * 335.21315 * 12 10 8 16 16 S 1.65602 * 119.99721 * 95.55267 * 7 6 5 17 17 O 1.42096 * 106.40667 * 203.54015 * 16 7 6 18 18 O 1.42107 * 106.40243 * 336.45981 * 16 7 6 19 19 C 1.76202 * 107.21770 * 90.00018 * 16 7 6 20 20 C 1.38690 * 120.31136 * 90.00284 * 19 16 7 21 21 C 1.38489 * 118.51017 * 180.02562 * 20 19 16 22 22 C 1.39458 * 119.05057 * 0.02562 * 21 20 19 23 23 C 1.43200 * 119.73746 * 180.02562 * 22 21 20 24 24 N 9.83213 * 164.14682 * 76.86728 * 4 1 2 25 25 N 1.32791 * 120.52301 * 0.02562 * 22 21 20 26 26 C 1.31587 * 121.62112 * 359.66379 * 25 22 21 27 27 H 1.09001 * 109.47406 * 299.99999 * 1 2 3 28 28 H 1.08994 * 109.47283 * 60.00553 * 1 2 3 29 29 H 1.09001 * 109.46962 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47332 * 59.99760 * 5 3 2 31 31 H 1.09000 * 109.46922 * 299.99142 * 5 3 2 32 32 H 1.08995 * 109.47309 * 295.57244 * 6 5 3 33 33 H 1.09002 * 109.46756 * 55.57191 * 6 5 3 34 34 H 0.96996 * 120.00298 * 180.02562 * 11 10 8 35 35 H 1.08007 * 120.74194 * 0.02562 * 20 19 16 36 36 H 1.08005 * 120.47628 * 180.02562 * 21 20 19 37 37 H 1.08001 * 119.54325 * 180.31090 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 -0.0011 7 7 5.4591 2.8200 0.1051 8 6 6.0599 2.7680 1.3345 9 1 6.9817 2.2199 1.4623 10 6 5.4843 3.4198 2.4165 11 7 5.8318 3.0922 3.6429 12 14 4.2164 4.7618 2.1318 13 1 2.8527 4.1801 2.2155 14 1 4.3696 5.8152 3.1672 15 1 4.4190 5.3567 0.7864 16 16 6.3818 2.9710 -1.2617 17 8 7.6723 2.4764 -0.9314 18 8 5.6019 2.4544 -2.3315 19 6 6.5743 4.6945 -1.5734 20 6 7.6426 5.3897 -1.0265 21 6 7.7574 6.7434 -1.2953 22 6 6.7996 7.3573 -2.1018 23 6 6.9043 8.7562 -2.3896 24 7 6.9893 9.8655 -2.6177 25 7 5.7911 6.6550 -2.6050 26 6 5.6625 5.3667 -2.3698 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.9557 0.7810 -0.8907 31 1 3.9563 0.7807 0.8892 32 1 3.6773 3.2161 -0.9280 33 1 3.5462 3.2554 0.8466 34 1 5.4294 3.5474 4.3990 35 1 8.3686 4.8866 -0.4050 36 1 8.5770 7.3155 -0.8861 37 1 4.8319 4.8271 -2.8002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193850855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:25 Heat of formation + Delta-G solvation = -90.686434 kcal Electronic energy + Delta-G solvation = -27304.516819 eV Core-core repulsion = 23174.761256 eV Total energy + Delta-G solvation = -4129.755563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.077 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.49399 -41.45298 -38.36846 -37.95209 -37.87639 -37.34747 -36.55327 -34.28532 -33.92186 -32.93702 -32.15027 -28.67136 -26.68447 -26.32452 -25.07478 -24.89989 -21.87114 -20.81250 -20.37836 -19.38987 -18.91575 -18.41574 -18.18480 -17.98465 -17.73650 -17.46450 -16.88669 -16.08632 -15.97327 -15.90624 -15.30298 -15.24458 -14.86920 -14.69471 -14.50899 -14.47282 -14.20437 -14.08784 -14.05589 -13.96619 -13.74335 -13.14940 -12.96827 -12.84806 -12.81875 -12.70277 -12.56506 -12.17470 -12.08613 -11.81252 -11.71825 -11.54669 -11.34072 -10.93331 -10.92371 -10.60867 -10.12671 -8.59601 -6.17950 -1.02696 -0.33730 -0.01718 1.17100 1.18959 1.26945 1.38489 1.39222 1.41163 1.74237 2.13538 2.16865 2.29868 2.56862 2.80979 3.00704 3.37218 3.41034 3.75873 3.78064 3.81898 3.90657 4.07417 4.10909 4.35536 4.37161 4.42654 4.47595 4.54536 4.64660 4.74583 4.78324 4.89296 5.15528 5.24286 5.37254 5.52086 5.99708 6.23059 6.36616 6.71590 6.92193 6.96483 8.49742 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.012080 B = 0.004362 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.393143 B = 6417.826454 C = 6706.125359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.473 3.527 4 O -0.539 6.539 5 C -0.128 4.128 6 C 0.120 3.880 7 N -0.835 5.835 8 C -0.271 4.271 9 H 0.106 0.894 10 C 0.052 3.948 11 N -0.860 5.860 12 Si 0.901 3.099 13 H -0.265 1.265 14 H -0.288 1.288 15 H -0.248 1.248 16 S 2.592 3.408 17 O -0.979 6.979 18 O -0.990 6.990 19 C -0.708 4.708 20 C 0.021 3.979 21 C -0.123 4.123 22 C 0.210 3.790 23 C 0.287 3.713 24 N -0.407 5.407 25 N -0.483 5.483 26 C 0.185 3.815 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.286 0.714 35 H 0.176 0.824 36 H 0.191 0.809 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -1.689 -5.101 6.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.277 6.277 3 C 0.317 3.683 4 O -0.429 6.429 5 C -0.167 4.167 6 C -0.006 4.006 7 N -0.660 5.660 8 C -0.415 4.415 9 H 0.123 0.877 10 C -0.161 4.161 11 N -0.497 5.497 12 Si 0.728 3.272 13 H -0.192 1.192 14 H -0.215 1.215 15 H -0.172 1.172 16 S 2.691 3.309 17 O -0.969 6.969 18 O -0.980 6.980 19 C -0.792 4.792 20 C -0.005 4.005 21 C -0.146 4.146 22 C 0.073 3.927 23 C -0.031 4.031 24 N -0.084 5.084 25 N -0.194 5.194 26 C 0.025 3.975 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.193 0.807 36 H 0.209 0.791 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.032 0.160 -6.553 7.695 hybrid contribution -0.392 0.728 0.938 1.250 sum -4.424 0.888 -5.614 7.203 Atomic orbital electron populations 1.23581 0.74779 1.05811 1.02541 1.86514 1.25089 1.32431 1.83671 1.23830 0.92150 0.81339 0.70968 1.90637 1.67946 1.37262 1.47098 1.21792 0.86848 0.99751 1.08326 1.21305 0.80594 0.95771 1.02966 1.53546 1.12870 1.79465 1.20155 1.18999 1.11134 1.28926 0.82446 0.87652 1.26001 0.98306 0.96982 0.94816 1.69820 1.41751 1.39036 0.99076 0.86503 0.80418 0.80692 0.79618 1.19201 1.21529 1.17184 1.08025 0.73863 0.75371 0.73648 1.93426 1.40817 1.78778 1.83927 1.93418 1.70357 1.78752 1.55466 1.33147 1.04587 1.32401 1.09024 1.21715 0.93769 0.93605 0.91436 1.22471 0.99826 0.95390 0.96911 1.16723 0.93273 0.86553 0.96149 1.24884 0.93259 0.91540 0.93388 1.81234 1.07778 1.11778 1.07569 1.67592 1.20860 1.08815 1.22112 1.22702 0.96132 0.88510 0.90168 0.92242 0.91679 0.84768 0.85220 0.85545 0.88650 0.92171 0.90352 0.80681 0.79133 0.79281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -9.57 10.57 -51.44 -0.54 -10.11 16 3 C 0.47 14.87 7.96 71.24 0.57 15.43 16 4 O -0.54 -19.48 15.68 21.97 0.34 -19.14 16 5 C -0.13 -4.03 6.10 29.85 0.18 -3.84 16 6 C 0.12 4.31 3.62 86.38 0.31 4.62 16 7 N -0.83 -32.16 2.46 -343.46 -0.85 -33.01 16 8 C -0.27 -11.89 9.53 84.03 0.80 -11.09 16 9 H 0.11 5.08 7.65 -2.91 -0.02 5.05 16 10 C 0.05 2.35 5.38 84.86 0.46 2.80 16 11 N -0.86 -41.46 13.97 21.65 0.30 -41.16 16 12 Si 0.90 36.73 24.83 68.60 1.70 38.43 16 13 H -0.27 -10.97 6.74 99.48 0.67 -10.30 16 14 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.25 -9.58 7.10 99.48 0.71 -8.87 16 16 S 2.59 94.91 5.61 -56.49 -0.32 94.60 16 17 O -0.98 -40.53 16.31 -128.00 -2.09 -42.61 16 18 O -0.99 -36.72 16.26 -128.00 -2.08 -38.80 16 19 C -0.71 -22.66 6.00 22.43 0.13 -22.52 16 20 C 0.02 0.59 9.64 22.44 0.22 0.81 16 21 C -0.12 -2.83 9.80 22.62 0.22 -2.61 16 22 C 0.21 5.64 6.58 40.54 0.27 5.91 16 23 C 0.29 7.60 15.53 88.34 1.37 8.97 16 24 N -0.41 -11.71 18.54 19.00 0.35 -11.36 16 25 N -0.48 -14.64 10.28 -189.21 -1.94 -16.58 16 26 C 0.19 5.65 10.68 84.78 0.91 6.55 16 27 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 29 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.13 3.65 8.14 -2.39 -0.02 3.63 16 31 H 0.13 3.94 8.14 -2.39 -0.02 3.92 16 32 H 0.10 3.09 7.59 -2.39 -0.02 3.07 16 33 H 0.06 2.34 2.76 -2.39 -0.01 2.34 16 34 H 0.29 12.93 8.31 -92.71 -0.77 12.16 16 35 H 0.18 4.45 7.70 -2.91 -0.02 4.43 16 36 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 37 H 0.19 5.10 7.62 -2.91 -0.02 5.08 16 Total: -1.00 -59.66 347.20 2.62 -57.05 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.10 Total: 15.98 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 6.63 Total: 6.72 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -2.14 Total: -102.11 kcal Atomic # 8 Polarization: -106.30 SS G_CDS: -4.37 Total: -110.67 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 1.70 Total: 38.43 kcal Atomic # 16 Polarization: 94.91 SS G_CDS: -0.32 Total: 94.60 kcal Total: -59.66 2.62 -57.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193850855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.640 kcal (2) G-P(sol) polarization free energy of solvation -59.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds