Wall clock time and date at job start Tue Mar 31 2020 22:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45204 * 109.47381 * 2 1 4 4 C 1.34231 * 116.99894 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99850 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99747 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.47204 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47101 * 54.99849 * 7 6 4 9 9 C 1.50699 * 109.47272 * 175.00491 * 7 6 4 10 10 H 1.08004 * 119.99600 * 239.99595 * 9 7 6 11 11 C 1.37873 * 120.00460 * 59.99812 * 9 7 6 12 12 N 1.31521 * 119.99518 * 359.97438 * 11 9 7 13 13 Si 1.86790 * 120.00308 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47196 * 89.99971 * 13 11 9 15 15 H 1.48500 * 109.47225 * 210.00068 * 13 11 9 16 16 H 1.48506 * 109.47186 * 329.99828 * 13 11 9 17 17 O 1.42905 * 109.46802 * 295.00352 * 7 6 4 18 18 C 1.35986 * 116.99959 * 149.99976 * 17 7 6 19 19 C 1.35916 * 125.75408 * 179.97438 * 18 17 7 20 20 N 1.36415 * 107.16095 * 180.02562 * 19 18 17 21 21 N 1.39834 * 132.89743 * 180.02562 * 20 19 18 22 22 C 1.30816 * 120.62096 * 179.97438 * 21 20 19 23 23 Cl 1.73606 * 119.55501 * 179.97438 * 22 21 20 24 24 C 1.40079 * 120.88848 * 359.97438 * 22 21 20 25 25 C 1.36217 * 120.13990 * 0.02562 * 24 22 21 26 26 C 1.37194 * 107.10441 * 0.02562 * 20 19 18 27 27 N 1.32706 * 108.13815 * 359.73535 * 26 20 19 28 28 H 1.08999 * 109.46670 * 59.99544 * 1 2 3 29 29 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46562 * 300.00014 * 1 2 3 31 31 H 1.09000 * 109.46924 * 240.00328 * 2 1 3 32 32 H 1.08999 * 109.47401 * 120.00315 * 2 1 3 33 33 H 1.09004 * 109.46950 * 60.00474 * 6 4 3 34 34 H 1.09000 * 109.47631 * 300.00178 * 6 4 3 35 35 H 0.97004 * 119.99535 * 180.02562 * 12 11 9 36 36 H 1.08001 * 126.41630 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.92692 * 180.02562 * 24 22 21 38 38 H 1.07994 * 120.41493 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 -0.0012 7 6 5.4488 2.8572 -0.0023 8 1 5.7801 2.2494 -0.8443 9 6 6.0244 4.2443 -0.1267 10 1 6.6587 4.4926 -0.9649 11 6 5.7416 5.1964 0.8296 12 7 4.9689 4.8941 1.8500 13 14 6.4546 6.9160 0.6750 14 1 5.5189 7.7722 -0.0974 15 1 6.6514 7.4938 2.0288 16 1 7.7604 6.8490 -0.0291 17 8 5.8955 2.2637 1.2185 18 6 7.0551 1.5548 1.1722 19 6 7.6403 0.9200 2.2219 20 7 8.7793 0.3335 1.7534 21 7 9.7713 -0.4408 2.3630 22 6 10.7848 -0.8917 1.6696 23 17 12.0011 -1.8499 2.4548 24 6 10.9019 -0.6117 0.3021 25 6 9.9548 0.1394 -0.3258 26 6 8.8637 0.6273 0.4159 27 7 7.8083 1.3613 0.0868 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5853 3.4696 0.8889 34 1 3.5846 3.4692 -0.8911 35 1 4.7696 5.5641 2.5226 36 1 7.2728 0.8870 3.2369 37 1 11.7449 -0.9922 -0.2555 38 1 10.0404 0.3576 -1.3800 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228845430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:02 Heat of formation + Delta-G solvation = 1.254665 kcal Electronic energy + Delta-G solvation = -26721.891228 eV Core-core repulsion = 22594.078824 eV Total energy + Delta-G solvation = -4127.812404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 339.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.11765 -39.76128 -38.41681 -37.25815 -36.42444 -35.71364 -33.49887 -33.13608 -31.57436 -30.51327 -30.13936 -28.55144 -26.23290 -24.25131 -23.22917 -23.02737 -21.87442 -20.77914 -19.85547 -18.38382 -17.66738 -17.20970 -16.72700 -16.15334 -15.98644 -15.85745 -15.60449 -15.18723 -14.58398 -14.19586 -13.89069 -13.82065 -13.64291 -13.47087 -13.06784 -12.88523 -12.49812 -12.10834 -12.09317 -11.86256 -11.69997 -11.43493 -11.25319 -11.07696 -11.01194 -10.90939 -10.84509 -10.75647 -10.46941 -10.11934 -9.74214 -9.68925 -9.29071 -9.21589 -8.71377 -8.39217 -7.27267 -6.20173 -4.37557 0.43407 0.92706 1.29428 2.53491 3.04230 3.12819 3.20420 3.29340 3.31997 3.36107 3.77969 4.13997 4.29077 4.31134 4.55290 4.64998 5.09941 5.14371 5.17418 5.19561 5.40192 5.49677 5.62812 5.69727 5.90941 5.93065 5.99078 6.02481 6.08586 6.31260 6.35218 6.38793 6.68126 6.95942 7.05252 7.33749 7.62672 7.72766 7.98643 8.14592 8.52090 8.58607 8.89249 9.38592 10.81740 Molecular weight = 339.08amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.003715 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.785866 B = 7535.332575 C = 9896.075153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.514 6.514 6 C -0.103 4.103 7 C 0.230 3.770 8 H 0.046 0.954 9 C -0.546 4.546 10 H 0.069 0.931 11 C 0.082 3.918 12 N -0.862 5.862 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.272 1.272 17 O -0.262 6.262 18 C 0.307 3.693 19 C -0.069 4.069 20 N -0.246 5.246 21 N -0.258 5.258 22 C 0.191 3.809 23 Cl 0.007 6.993 24 C -0.192 4.192 25 C 0.021 3.979 26 C 0.163 3.837 27 N -0.477 5.477 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.267 0.733 36 H 0.189 0.811 37 H 0.158 0.842 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 -10.603 -2.217 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.301 3.699 5 O -0.401 6.401 6 C -0.141 4.141 7 C 0.176 3.824 8 H 0.064 0.936 9 C -0.583 4.583 10 H 0.087 0.913 11 C -0.124 4.124 12 N -0.498 5.498 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.197 1.197 17 O -0.167 6.167 18 C 0.128 3.872 19 C -0.205 4.205 20 N -0.023 5.023 21 N -0.074 5.074 22 C -0.007 4.007 23 Cl 0.035 6.965 24 C -0.219 4.219 25 C -0.007 4.007 26 C -0.079 4.079 27 N -0.214 5.214 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.122 0.878 35 H 0.077 0.923 36 H 0.206 0.794 37 H 0.176 0.824 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.540 -10.598 -1.551 11.281 hybrid contribution 0.921 0.466 0.058 1.034 sum 4.462 -10.131 -1.493 11.171 Atomic orbital electron populations 1.21777 0.93321 1.02291 1.03326 1.22846 0.94827 0.81857 1.01997 1.86578 1.26188 1.30913 1.84773 1.24920 0.79463 0.94344 0.71221 1.90604 1.60184 1.43613 1.45742 1.21898 0.96786 0.88122 1.07263 1.19739 0.87967 0.92661 0.82044 0.93590 1.21411 1.32165 0.94569 1.10125 0.91332 1.25078 0.93870 0.98998 0.94485 1.69858 1.34643 1.34410 1.10913 0.86533 0.79832 0.83730 0.77625 1.20189 1.20976 1.19690 1.86496 1.30240 1.61315 1.38629 1.18798 0.89153 0.91580 0.87653 1.21110 0.89031 1.09113 1.01202 1.46130 1.15109 1.32764 1.08345 1.74999 0.98833 1.09239 1.24349 1.22472 0.91371 0.95369 0.91444 1.98430 1.48736 1.67729 1.81631 1.21065 1.03193 1.05035 0.92565 1.20463 0.88126 0.91240 1.00879 1.20954 0.99385 1.04343 0.83197 1.70654 1.03712 1.18440 1.28607 0.91713 0.90885 0.91589 0.91929 0.91785 0.84243 0.87842 0.92312 0.79358 0.82397 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.81 10.22 -39.26 -0.40 -7.21 16 4 C 0.46 9.79 7.84 36.00 0.28 10.07 16 5 O -0.51 -12.16 15.17 -24.05 -0.36 -12.52 16 6 C -0.10 -2.32 5.22 -27.88 -0.15 -2.47 16 7 C 0.23 5.78 1.72 -27.88 -0.05 5.73 16 8 H 0.05 1.19 7.09 -51.93 -0.37 0.82 16 9 C -0.55 -14.38 8.90 -34.44 -0.31 -14.69 16 10 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 11 C 0.08 2.13 5.24 -17.82 -0.09 2.04 16 12 N -0.86 -22.79 10.93 55.43 0.61 -22.18 16 13 Si 0.90 20.28 29.54 -169.99 -5.02 15.25 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 O -0.26 -6.78 8.49 -34.12 -0.29 -7.07 16 18 C 0.31 7.36 7.64 -17.65 -0.13 7.22 16 19 C -0.07 -1.47 12.03 -16.35 -0.20 -1.67 16 20 N -0.25 -4.81 4.02 -11.95 -0.05 -4.86 16 21 N -0.26 -4.38 11.91 32.96 0.39 -3.99 16 22 C 0.19 2.57 7.37 -17.29 -0.13 2.44 16 23 Cl 0.01 0.07 29.11 -51.86 -1.51 -1.44 16 24 C -0.19 -2.21 9.80 -39.62 -0.39 -2.60 16 25 C 0.02 0.29 10.11 -39.39 -0.40 -0.11 16 26 C 0.16 3.15 7.88 -155.91 -1.23 1.92 16 27 N -0.48 -10.92 10.23 -12.84 -0.13 -11.05 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 32 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.14 3.37 6.22 -51.93 -0.32 3.05 16 34 H 0.10 2.12 8.14 -51.93 -0.42 1.70 16 35 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.19 3.53 8.06 -52.49 -0.42 3.11 16 37 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 353.63 15.07 5.33 5.33 Total: -1.00 -31.57 353.63 -7.65 -39.22 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.04 Total: 2.78 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -2.17 Total: 7.74 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.82 Total: -42.08 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.06 Total: -26.81 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -1.51 Total: -1.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.57 -7.65 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228845430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.477 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds